Rmu_sc0001531.1_g000026

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001531.1
OG0004523
Physical Location & Seq
Forward (+)
71868 .. 72692
825 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
atggagggtaagaaacccaagactatctttactgatcgatgtcaggcaatggcaaatgccattgaaaaggactttcctgagacacgccaccggttatgtttgtggcacatatcaaagaatgcagtacaaaacttgaattggctgtatagaaactctgattttgggaacacatggctccagacactctatgatcttcgtgaaaaatggtgtgcattatttagcaaggatacattttctgccagaatattatctacacaaagaagtgagagcacaaacaatgtgtttatcctcatgtatactaaaacactgagtctcactgaatttgtgcatcattatgataaacaggcagaacaaatgcgttcaagtgaattggaagaaacttttcgatgcaataacgaaatacctactagggctgcaaaaattagtggaattaagaagcaagctggtatggtctacacttttaaaatttatagtttatttgagtttgagtttatcgctagcttggcagtgaagatggaggaagttggaagtgatgggacattgcagacatttgagcttaatgaggagggccataaaagagtgtacattgtccaattcaacccttcgaatctgaccatctccagtagttgtcagttgtacgaatctattggctggttatgtcgtcattctttgagggttttaaatgtgaaaaatattactcaaataccaacacagtatatactaaagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

243

Amino Acids

28.44

Weight (kDa)

8.82

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 1 - 40 1.9e-12 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 296, 453
AcsI RAATTY 2 cut(s) 320, 465
AfaI GTAC 3 cut(s) 126, 584, 638
AgeI ACCGGT 1 cut(s) 90
AgsI TTSAA 4 cut(s) 65, 136, 363, 598
AluBI AGCT 3 cut(s) 443, 501, 556
AluI AGCT 3 cut(s) 443, 501, 556
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 74, 317
AoxI GGCC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 320, 465
AsiGI ACCGGT 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 605
AsuNHI GCTAGC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 400
BccI CCATC 3 cut(s) 508, 527, 623
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 74, 317
BfaI CTAG 2 cut(s) 408, 498
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 176
BmsI GCATC 2 cut(s) 337, 377
BmtI GCTAGC 1 cut(s) 501
BpmI CTGGAG 2 cut(s) 161, 604
Bpu14I TTCGAA 1 cut(s) 605
Bsa29I ATCGAT 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 2 cut(s) 54, 539
BseCI ATCGAT 1 cut(s) 37
BseMI GCAATG 2 cut(s) 54, 539
BseMII CTCAG 2 cut(s) 69, 299
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 400
BshFI GGCC 1 cut(s) 570
BshTI ACCGGT 1 cut(s) 90
BshVI ATCGAT 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 550
BsmAI GTCTC 2 cut(s) 74, 317
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 570
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 2 cut(s) 34, 190
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 2 cut(s) 70, 300
BspDI ATCGAT 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 176
BspOI GCTAGC 1 cut(s) 501
BspT104I TTCGAA 1 cut(s) 605
BsrDI GCAATG 2 cut(s) 54, 539
BsrFI RCCGGY 1 cut(s) 90
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 1 cut(s) 621
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 2 cut(s) 34, 190
BssNAI GTATAC 1 cut(s) 297
Bst1107I GTATAC 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 714
BstAUI TGTACA 1 cut(s) 582
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 2 cut(s) 441, 499
BstDEI CTNAG 2 cut(s) 78, 308
BstKTI GATC 2 cut(s) 37, 193
BstMAI GTCTC 2 cut(s) 74, 317
BstMBI GATC 2 cut(s) 34, 190
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstV1I GCAGC 1 cut(s) 400
BstZ17I GTATAC 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 37
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 570
BsuTUI ATCGAT 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 305, 315, 513
Cac8I GCNNGC 2 cut(s) 441, 499
Cfr10I RCCGGY 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 568
ClaI ATCGAT 1 cut(s) 37
Csp6I GTAC 3 cut(s) 125, 583, 637
CspAI ACCGGT 1 cut(s) 90
CviAII CATG 2 cut(s) 171, 292
CviJI RGCY 8 cut(s) 142, 175, 413, 443, 501, 556, 570, 651
CviKI_1 RGCY 8 cut(s) 142, 175, 413, 443, 501, 556, 570, 651
CviQI GTAC 3 cut(s) 125, 583, 637
DdeI CTNAG 2 cut(s) 78, 308
DpnI GATC 2 cut(s) 36, 192
DpnII GATC 2 cut(s) 34, 190
DraI TTTAAA 2 cut(s) 463, 681
FaeI CATG 2 cut(s) 174, 295
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 550
FatI CATG 2 cut(s) 170, 291
FblI GTMKAC 2 cut(s) 296, 453
Fnu4HI GCNGC 1 cut(s) 414
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 2 cut(s) 408, 498
GluI GCNGC 1 cut(s) 414
GsuI CTGGAG 2 cut(s) 161, 604
HaeIII GGCC 1 cut(s) 570
HapII CCGG 1 cut(s) 91
Hin1II CATG 2 cut(s) 174, 295
HinfI GANTC 3 cut(s) 310, 607, 641
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 297, 454, 583
Hpy188I TCNGA 2 cut(s) 157, 612
Hpy188III TCNNGA 3 cut(s) 77, 178, 197
Hpy8I GTNNAC 3 cut(s) 297, 454, 583
HpyAV CCTTC 1 cut(s) 612
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 122, 212, 328, 390, 416, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 2 cut(s) 78, 308
Hsp92II CATG 2 cut(s) 174, 295
Kzo9I GATC 2 cut(s) 34, 190
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 9 cut(s) 29, 90, 104, 191, 253, 329, 429, 634, 637
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 2 cut(s) 337, 377
MaeI CTAG 2 cut(s) 408, 498
MalI GATC 2 cut(s) 36, 192
MboI GATC 2 cut(s) 34, 190
MboII GAAGA 3 cut(s) 185, 386, 523
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 7 cut(s) 136, 320, 368, 420, 429, 465, 593
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 5 cut(s) 299, 511, 556, 559, 666
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 4 cut(s) 432, 462, 558, 680
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 503
NdeII GATC 2 cut(s) 34, 190
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 2 cut(s) 174, 295
NlaIV GGNNCC 1 cut(s) 176
NspV TTCGAA 1 cut(s) 605
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 607, 641
PinAI ACCGGT 1 cut(s) 90
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 568
RsaI GTAC 3 cut(s) 126, 584, 638
RsaNI GTAC 3 cut(s) 125, 583, 637
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 4 cut(s) 432, 462, 558, 680
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 2 cut(s) 34, 190
Sau96I GGNCC 1 cut(s) 568
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 272
SetI ASST 4 cut(s) 406, 445, 503, 558
SfaNI GCATC 2 cut(s) 337, 377
SfuI TTCGAA 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 7 cut(s) 136, 320, 368, 420, 429, 465, 593
SspI AATATT 2 cut(s) 246, 694
SspMI CTAG 2 cut(s) 408, 498
TaaI ACNGT 1 cut(s) 714
TaqI TCGA 3 cut(s) 37, 385, 605
TasI AATT 7 cut(s) 136, 320, 368, 420, 429, 465, 593
TatI WGTACW 2 cut(s) 124, 582
TfiI GAWTC 2 cut(s) 607, 641
Tru1I TTAA 4 cut(s) 432, 462, 558, 680
Tru9I TTAA 4 cut(s) 432, 462, 558, 680
TscAI CASTG 3 cut(s) 312, 322, 513
TseI GCWGC 1 cut(s) 413
TspRI CASTG 3 cut(s) 312, 322, 513
XapI RAATTY 2 cut(s) 320, 465
XmiI GTMKAC 2 cut(s) 296, 453
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 2 cut(s) 408, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.