Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001578.1

Orthogroup ID

OG0001756

Physical Location & Seq

Genomic Coordinates Reverse (-)

21449 .. 23587

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atgcatcagggccgtcgaaaccaaaacgccctcaaccataggatcactacacgtgtcccacacctccccccatttctcgaagctttgcaggcgaaaggacgggcatttattgcacaacccagtctactccacgtggccgaaatgcaccgcctaccccattgggtatcagagccaagtcctctctctaccccattgggtaccggaggctcaattttctaccccatcgggtatcagagccaagtcctctctctaccctattggggaccagaagtcctctctctaccccattgggtatcggaggtcctctctctaccccattgggtatcggaggtcctctctctaccccattgggtaccggaggctcaattttctaccccattgggtatcagagccaagtcctctctctacccatccggtaccagagactcaaccctcatcctgtcccagggcgtaggtggcttttacctacagcgtagcccgctcaagatttctcttatgagtgaacttgggggactacctataggcacactagtttggcactatcggctgggccccatcggtactcccaggtactatgccatgggccgggttcacgactcacaatggagggcctcacaagggatgccaccccggacacccagggcccggggcaaagccagcacagcccatctatacataagaggactgataacatcagaagaacctgtgtcccacatcgaggataggagagactcctttcctatgctcgaatataaagacattagcacaaccaccttcaggaggtggcaggcggctaccgctaagtgctgggatctcaacaaggagttggcggagcaagctttcaggaggggcttaagacccggggatttcctctatggaatcaatcatcatcccccggctagctacgatgagtccacaaattatacaggaacacagtcccactgggatgaccggacacaataccccaagacaccacctccacccctgtatgaggtattctctgtcctcactgccacgtacgagaccatctggaacgaaaacagagacgaaatacccgggccaccgccctgtaagttcccaaaaagtaaacttacacagcaggataccggcaggttctgcacttatcatgaggacgccggacataataccaatctttatatggccctgaagagcacaatcgagtccctcgtccagaagggaaaacttcagcagtatctaccagctaaagagataggagccattgacgtatatggccggattctcactatccatggtggcggcctgaaggacttacctcctcggagcaggaagcgacactccagtttgggacacccagaggttttcaatttccacaagaccccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

454

Amino Acids

51.29

Weight (kDa)

9.41

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001756)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22375
rosa_chinensis	RchiOBHm_Chr3g0482361 RchiOBHm_Chr4g0398941 RchiOBHm_Chr4g0410131 RchiOBHm_Chr4g0414411 RchiOBHm_Chr4g0439801 RchiOBHm_Chr5g0001911 RchiOBHm_Chr5g0007811 RchiOBHm_Chr5g0014191 RchiOBHm_Chr5g0040521 RchiOBHm_Chr5g0060701 RchiOBHm_Chr6g0270991 RchiOBHm_Chr6g0312491 RchiOBHm_Chr7g0226901
rosa_multiflora	Rmu_co8433019.1_g000001 Rmu_sc0001578.1_g000013 Rmu_sc0003226.1_g000060 Rmu_sc0009149.1_g000012 Rmu_sc0025211.1_g000004 Rmu_sc0041581.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010170 Rroxscaffold_1G00014620 Rroxscaffold_1G00020060 Rroxscaffold_1G00023340 Rroxscaffold_2G00077810 Rroxscaffold_2G00077820 Rroxscaffold_2G00103990 Rroxscaffold_2G00113000 Rroxscaffold_2G00115650 Rroxscaffold_2G00128240 Rroxscaffold_2G00155150 Rroxscaffold_3G00257980 Rroxscaffold_3G00259740 Rroxscaffold_4G00292940 Rroxscaffold_4G00299500 Rroxscaffold_4G00306180 Rroxscaffold_4G00318610 Rroxscaffold_4G00321500 Rroxscaffold_4G00324360 Rroxscaffold_5G00354950 Rroxscaffold_5G00362380 Rroxscaffold_7G00162030 Rroxscaffold_7G00183190
rosa_rugosa	Rorug05G0251500
rosa_samantha	Rh4DG198500 Rh5AG328100 Rh5AG420900
rosa_wichuraiana	Rw2G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1101
Acc65I	GGTACC	3 cut(s)	197, 352, 416
AccB1I	GGYRCC	3 cut(s)	197, 352, 416
AccBSI	CCGCTC	1 cut(s)	481
AccI	GTMKAC	1 cut(s)	124
AciI	CCGC	7 cut(s)	148, 479, 791, 798, 830, 1064, 1278
AclWI	GGATC	2 cut(s)	50, 819
AcoI	YGGCCR	2 cut(s)	135, 1252
AcuI	CTGAAG	4 cut(s)	760, 1187, 1190, 1304
AcvI	CACGTG	2 cut(s)	53, 133
AcyI	GRCGYC	1 cut(s)	1134
AfaI	GTAC	6 cut(s)	199, 354, 418, 562, 572, 1019
AfiI	CCNNNNNNNGG	9 cut(s)	260, 445, 585, 618, 645, 718, 777, 780, 991
AflII	CTTAAG	1 cut(s)	853
AflIII	ACRYGT	2 cut(s)	50, 52
AgsI	TTSAA	1 cut(s)	1345
AhdI	GACNNNNNGTC	1 cut(s)	269
AhlI	ACTAGT	1 cut(s)	529
AjnI	CCWGG	3 cut(s)	444, 566, 638
AluBI	AGCT	4 cut(s)	83, 839, 903, 1223
AluI	AGCT	4 cut(s)	83, 839, 903, 1223
Alw21I	GWGCWC	1 cut(s)	1175
Alw26I	GTCTC	4 cut(s)	417, 723, 1016, 1038
AlwI	GGATC	2 cut(s)	50, 819
AlwNI	CAGNNNCTG	1 cut(s)	1116
Ama87I	CYCGRG	3 cut(s)	645, 860, 1055
ApaI	GGGCCC	2 cut(s)	554, 646
Asp718I	GGTACC	3 cut(s)	197, 352, 416
AsuC2I	CCSGG	9 cut(s)	587, 631, 646, 647, 861, 862, 896, 1056, 1057
AsuNHI	GCTAGC	1 cut(s)	899
AvaI	CYCGRG	3 cut(s)	645, 860, 1055
AvaII	GGWCC	3 cut(s)	263, 301, 331
BaeGI	GKGCMC	2 cut(s)	554, 646
BanI	GGYRCC	3 cut(s)	197, 352, 416
BanII	GRGCYC	2 cut(s)	554, 646
BbrPI	CACGTG	2 cut(s)	53, 133
Bbv12I	GWGCWC	1 cut(s)	1175
BccI	CCATC	5 cut(s)	230, 418, 563, 675, 1034
BciT130I	CCWGG	3 cut(s)	446, 568, 640
BciVI	GTATCC	1 cut(s)	1096
BcnI	CCSGG	9 cut(s)	587, 631, 646, 647, 861, 862, 896, 1056, 1057
BcoDI	GTCTC	4 cut(s)	417, 723, 1016, 1038
BcuI	ACTAGT	1 cut(s)	529
BfaI	CTAG	2 cut(s)	530, 900
BfmI	CTRYAG	2 cut(s)	467, 519
BfrI	CTTAAG	1 cut(s)	853
BfuAI	ACCTGC	1 cut(s)	1101
BfuI	GTATCC	1 cut(s)	1096
BisI	GCNGC	2 cut(s)	792, 1279
BlsI	GCNGC	2 cut(s)	793, 1280
Bme18I	GGWCC	3 cut(s)	263, 301, 331
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmeT110I	CYCGRG	3 cut(s)	645, 860, 1055
BmiI	GGNNCC	8 cut(s)	199, 264, 354, 418, 552, 553, 644, 1237
BmrI	ACTGGG	2 cut(s)	114, 952
BmsI	GCATC	2 cut(s)	13, 612
BmtI	GCTAGC	1 cut(s)	903
BmuI	ACTGGG	2 cut(s)	114, 952
BplI	GAGNNNNNCTC	6 cut(s)	290, 322, 320, 352, 983, 1015
BpmI	CTGGAG	1 cut(s)	1303
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	9 cut(s)	587, 631, 646, 647, 861, 862, 896, 1056, 1057
BsaAI	YACGTR	3 cut(s)	53, 133, 1017
BsaHI	GRCGYC	1 cut(s)	1134
BsaI	GGTCTC	1 cut(s)	1016
BsaWI	WCCGGW	4 cut(s)	200, 355, 413, 951
BsaXI	ACNNNNNCTCC	2 cut(s)	961, 991
Bsc4I	CCNNNNNNNGG	9 cut(s)	260, 445, 585, 618, 645, 718, 777, 780, 991
Bse118I	RCCGGY	1 cut(s)	1106
Bse1I	ACTGG	3 cut(s)	120, 947, 1320
BseBI	CCWGG	3 cut(s)	446, 568, 640
BseGI	GGATG	5 cut(s)	410, 435, 627, 889, 952
BseLI	CCNNNNNNNGG	9 cut(s)	260, 445, 585, 618, 645, 718, 777, 780, 991
BseNI	ACTGG	3 cut(s)	120, 947, 1320
BseRI	GAGGAG	1 cut(s)	1287
BseSI	GKGCMC	2 cut(s)	554, 646
BseYI	CCCAGC	2 cut(s)	547, 807
BsgI	GTGCAG	1 cut(s)	1102
BshNI	GGYRCC	3 cut(s)	197, 352, 416
BsiHKAI	GWGCWC	1 cut(s)	1175
BsiHKCI	CYCGRG	3 cut(s)	645, 860, 1055
BsiWI	CGTACG	1 cut(s)	1017
BslFI	GGGAC	8 cut(s)	41, 276, 427, 525, 694, 922, 1168, 1341
BslI	CCNNNNNNNGG	9 cut(s)	260, 445, 585, 618, 645, 718, 777, 780, 991
BsmAI	GTCTC	4 cut(s)	417, 723, 1016, 1038
BsmBI	CGTCTC	1 cut(s)	1038
BsmFI	GGGAC	8 cut(s)	41, 276, 427, 525, 694, 922, 1168, 1341
Bso31I	GGTCTC	1 cut(s)	1016
BsoBI	CYCGRG	3 cut(s)	645, 860, 1055
Bsp120I	GGGCCC	2 cut(s)	550, 642
Bsp1286I	GDGCHC	3 cut(s)	554, 646, 1175
Bsp143I	GATC	2 cut(s)	42, 811
Bsp19I	CCATGG	2 cut(s)	579, 1270
BspACI	CCGC	7 cut(s)	148, 479, 791, 798, 830, 1064, 1278
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	8 cut(s)	199, 264, 354, 418, 552, 553, 644, 1237
BspMI	ACCTGC	1 cut(s)	1101
BspOI	GCTAGC	1 cut(s)	903
BspPI	GGATC	2 cut(s)	50, 819
BspQI	GCTCTTC	1 cut(s)	1163
BspT107I	GGYRCC	3 cut(s)	197, 352, 416
BspTI	CTTAAG	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	1016
BsrBI	CCGCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	1106
BsrI	ACTGG	3 cut(s)	120, 947, 1320
BssAI	RCCGGY	1 cut(s)	1106
BssMI	GATC	2 cut(s)	42, 811
BssNI	GRCGYC	1 cut(s)	1134
BssT1I	CCWWGG	2 cut(s)	579, 1270
Bst2UI	CCWGG	3 cut(s)	446, 568, 640
Bst4CI	ACNGT	1 cut(s)	936
Bst6I	CTCTTC	1 cut(s)	1163
BstACI	GRCGYC	1 cut(s)	1134
BstAFI	CTTAAG	1 cut(s)	853
BstAPI	GCANNNNNTGC	2 cut(s)	110, 1116
BstBAI	YACGTR	3 cut(s)	53, 133, 1017
BstC8I	GCNNGC	6 cut(s)	90, 479, 658, 789, 837, 901
BstDEI	CTNAG	1 cut(s)	801
BstDSI	CCRYGG	2 cut(s)	579, 1270
BstENI	CCTNNNNNAGG	3 cut(s)	443, 778, 989
BstF5I	GGATG	5 cut(s)	410, 435, 627, 889, 952
BstKTI	GATC	2 cut(s)	45, 814
BstMAI	GTCTC	4 cut(s)	417, 723, 1016, 1038
BstMBI	GATC	2 cut(s)	42, 811
BstNI	CCWGG	3 cut(s)	446, 568, 640
BstSFI	CTRYAG	2 cut(s)	467, 519
BstSLI	GKGCMC	2 cut(s)	554, 646
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	1096
BtgI	CCRYGG	2 cut(s)	579, 1270
BtsCI	GGATG	5 cut(s)	410, 435, 627, 889, 952
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	2 cut(s)	940, 1008
BveI	ACCTGC	1 cut(s)	1101
Cac8I	GCNNGC	6 cut(s)	90, 479, 658, 789, 837, 901
CaiI	CAGNNNCTG	1 cut(s)	1116
CciI	TCATGA	1 cut(s)	1126
Cfr10I	RCCGGY	1 cut(s)	1106
Cfr9I	CCCGGG	3 cut(s)	645, 860, 1055
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	6 cut(s)	198, 353, 417, 561, 571, 1018
CviAII	CATG	3 cut(s)	580, 1127, 1271
CviQI	GTAC	6 cut(s)	198, 353, 417, 561, 571, 1018
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	2 cut(s)	44, 813
DpnII	GATC	2 cut(s)	42, 811
DriI	GACNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	2 cut(s)	135, 1252
Eam1104I	CTCTTC	1 cut(s)	1163
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	1163
EciI	GGCGGA	1 cut(s)	845
Eco130I	CCWWGG	2 cut(s)	579, 1270
Eco24I	GRGCYC	2 cut(s)	554, 646
Eco31I	GGTCTC	1 cut(s)	1016
Eco47I	GGWCC	3 cut(s)	263, 301, 331
Eco57I	CTGAAG	4 cut(s)	760, 1187, 1190, 1304
Eco72I	CACGTG	2 cut(s)	53, 133
Eco88I	CYCGRG	3 cut(s)	645, 860, 1055
EcoNI	CCTNNNNNAGG	3 cut(s)	443, 778, 989
EcoO109I	RGGNCCY	5 cut(s)	301, 331, 551, 609, 642
EcoRII	CCWGG	3 cut(s)	444, 566, 638
EcoT14I	CCWWGG	2 cut(s)	579, 1270
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	554, 646
ErhI	CCWWGG	2 cut(s)	579, 1270
Esp3I	CGTCTC	1 cut(s)	1038
FaeI	CATG	3 cut(s)	583, 1130, 1274
FaqI	GGGAC	8 cut(s)	41, 276, 427, 525, 694, 922, 1168, 1341
FatI	CATG	3 cut(s)	579, 1126, 1270
FauI	CCCGC	1 cut(s)	486
FblI	GTMKAC	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	792, 1279
FokI	GGATG	5 cut(s)	397, 422, 634, 876, 959
FriOI	GRGCYC	2 cut(s)	554, 646
Fsp4HI	GCNGC	2 cut(s)	792, 1279
FspBI	CTAG	2 cut(s)	530, 900
GluI	GCNGC	2 cut(s)	792, 1279
GsaI	CCCAGC	2 cut(s)	551, 811
GsuI	CTGGAG	1 cut(s)	1303
HgaI	GACGC	1 cut(s)	1142
Hin1I	GRCGYC	1 cut(s)	1134
Hin1II	CATG	3 cut(s)	583, 1130, 1274
HindIII	AAGCTT	2 cut(s)	81, 837
HinfI	GANTC	7 cut(s)	425, 596, 731, 879, 911, 1181, 1258
Hpy166II	GTNNAC	5 cut(s)	125, 503, 592, 915, 1088
Hpy188I	TCNGA	7 cut(s)	169, 234, 298, 328, 389, 697, 1302
Hpy188III	TCNNGA	8 cut(s)	77, 484, 593, 778, 844, 1030, 1127, 1192
Hpy8I	GTNNAC	5 cut(s)	125, 503, 592, 915, 1088
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	3 cut(s)	784, 1189, 1279
HpyCH4III	ACNGT	1 cut(s)	936
HpyCH4IV	ACGT	4 cut(s)	52, 132, 1016, 1245
HpyCH4V	TGCA	5 cut(s)	4, 88, 113, 145, 1119
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	4 cut(s)	52, 132, 1016, 1245
Hsp92I	GRCGYC	1 cut(s)	1134
Hsp92II	CATG	3 cut(s)	583, 1130, 1274
KpnI	GGTACC	3 cut(s)	201, 356, 420
Kzo9I	GATC	2 cut(s)	42, 811
LguI	GCTCTTC	1 cut(s)	1163
LmnI	GCTCC	3 cut(s)	832, 1235, 1302
LweI	GCATC	2 cut(s)	13, 612
MaeI	CTAG	2 cut(s)	530, 900
MaeII	ACGT	4 cut(s)	52, 132, 1016, 1245
MalI	GATC	2 cut(s)	44, 813
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	2 cut(s)	42, 811
MboII	GAAGA	2 cut(s)	710, 1180
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	3 cut(s)	554, 646, 1175
MluCI	AATT	4 cut(s)	210, 365, 919, 1345
MlyI	GAGTC	5 cut(s)	419, 590, 725, 920, 1190
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	854
MslI	CAYNNNNRTG	1 cut(s)	945
MspCI	CTTAAG	1 cut(s)	853
MvaI	CCWGG	3 cut(s)	446, 568, 640
NciI	CCSGG	9 cut(s)	587, 631, 646, 647, 861, 862, 896, 1056, 1057
NcoI	CCATGG	2 cut(s)	579, 1270
NdeII	GATC	2 cut(s)	42, 811
NheI	GCTAGC	1 cut(s)	899
NlaIII	CATG	3 cut(s)	583, 1130, 1274
NlaIV	GGNNCC	8 cut(s)	199, 264, 354, 418, 552, 553, 644, 1237
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	1126
PasI	CCCWGGG	2 cut(s)	445, 639
PciSI	GCTCTTC	1 cut(s)	1163
PcsI	WCGNNNNNNNCGW	1 cut(s)	1185
PfeI	GAWTC	2 cut(s)	879, 1258
Pfl23II	CGTACG	1 cut(s)	1017
PkrI	GCNGC	2 cut(s)	793, 1280
PleI	GAGTC	5 cut(s)	419, 590, 725, 919, 1189
PmaCI	CACGTG	2 cut(s)	53, 133
PmlI	CACGTG	2 cut(s)	53, 133
PpsI	GAGTC	5 cut(s)	419, 590, 725, 919, 1189
Ppu21I	YACGTR	3 cut(s)	53, 133, 1017
PpuMI	RGGWCCY	2 cut(s)	301, 331
Psp5II	RGGWCCY	2 cut(s)	301, 331
Psp6I	CCWGG	3 cut(s)	444, 566, 638
PspCI	CACGTG	2 cut(s)	53, 133
PspFI	CCCAGC	2 cut(s)	547, 807
PspGI	CCWGG	3 cut(s)	444, 566, 638
PspLI	CGTACG	1 cut(s)	1017
PspN4I	GGNNCC	8 cut(s)	199, 264, 354, 418, 552, 553, 644, 1237
PspOMI	GGGCCC	2 cut(s)	550, 642
PspPPI	RGGWCCY	2 cut(s)	301, 331
PstNI	CAGNNNCTG	1 cut(s)	1116
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	6 cut(s)	199, 354, 418, 562, 572, 1019
RsaNI	GTAC	6 cut(s)	198, 353, 417, 561, 571, 1018
RseI	CAYNNNNRTG	1 cut(s)	945
SapI	GCTCTTC	1 cut(s)	1163
SaqAI	TTAA	1 cut(s)	854
SatI	GCNGC	2 cut(s)	792, 1279
Sau3AI	GATC	2 cut(s)	42, 811
SchI	GAGTC	5 cut(s)	419, 590, 725, 920, 1190
SduI	GDGCHC	3 cut(s)	554, 646, 1175
SfaNI	GCATC	2 cut(s)	13, 612
SfcI	CTRYAG	2 cut(s)	467, 519
SinI	GGWCC	3 cut(s)	263, 301, 331
SmaI	CCCGGG	3 cut(s)	647, 862, 1057
SmiMI	CAYNNNNRTG	1 cut(s)	945
SmlI	CTYRAG	2 cut(s)	482, 853
SmoI	CTYRAG	2 cut(s)	482, 853
SpeI	ACTAGT	1 cut(s)	529
Sse9I	AATT	4 cut(s)	210, 365, 919, 1345
SsiI	CCGC	7 cut(s)	148, 479, 791, 798, 830, 1064, 1278
SspMI	CTAG	2 cut(s)	530, 900
StyI	CCWWGG	2 cut(s)	579, 1270
TaaI	ACNGT	1 cut(s)	936
TaiI	ACGT	4 cut(s)	55, 135, 1019, 1248
TaqI	TCGA	5 cut(s)	16, 78, 717, 747, 1179
TasI	AATT	4 cut(s)	210, 365, 919, 1345
TauI	GCSGC	2 cut(s)	794, 1281
TfiI	GAWTC	2 cut(s)	879, 1258
Tru1I	TTAA	1 cut(s)	854
Tru9I	TTAA	1 cut(s)	854
TscAI	CASTG	2 cut(s)	947, 1015
TspMI	CCCGGG	3 cut(s)	645, 860, 1055
TspRI	CASTG	2 cut(s)	947, 1015
Vha464I	CTTAAG	1 cut(s)	853
VpaK11BI	GGWCC	3 cut(s)	263, 301, 331
XagI	CCTNNNNNAGG	3 cut(s)	443, 778, 989
XcmI	CCANNNNNNNNNTGG	2 cut(s)	452, 1156
XmaI	CCCGGG	3 cut(s)	645, 860, 1055
XmiI	GTMKAC	1 cut(s)	124
XspI	CTAG	2 cut(s)	530, 900
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.