Rmu_sc0004940.1_g000002

Histone-lysine N-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004940.1
OG0002127
Physical Location & Seq
Reverse (-)
29063 .. 30250
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1188 bp
atgacaaaggaggtgaggctaacggagatacaaggcagaggaaggtcattagtggcggctcagccactcaaaggcggccaaatcgttctccgcgactctcctctcctcctctactccgctcttcctctcctcgctccctctcctcccccttattgcgaccactgcttcaaaaccctaaacccacaaaccgcccccatttcactctgccaatcctgctccctccacgccttctgcacccccaattgcctctccgccgcccagtcctcctcccacactcaatgggtctgccaatccctcacgaaattacgaaattgccactccccgctctccggccagcccgccgccgaccgtcaggtccaagctcgcttcttgatcgccgcttacaacctcgccgtcacttcgccgtcgagtttccaggtgctgctctctcttcagggccagccgcaggactccgccgacgctcagttcctgcattctctgatttcgaccctctgccctccgccgcagcagcaactgttttcggtggagctcacggcggcgctgttggccaaggacaagatgaatgcgtttggattgatggagcccccttcggaatttgggctgagatcgagcagagcctatggaatttatcccaaggcctcgtttttcaaccatgattgtctccccaatgcgtgccgatttgattatgttgatgaaggcagcacggagattattgtgaggatgattcacgatgttccggaggggagggagatttgcctgagctactttcctgttaaccaggcttattcgagccggcagaggactctggctgaggactatgggtttgtgtgtcaatgtgatcgatgcaaggttgaggcgagttggtctgacaatgaggaggttgaggaggaaggtggttcggctgaggttatggatgaggaccaagaccaggaaatggaaggagaatcggaatcagaagctgggagtgacattgaagcagaagctcaaggagaagctgattttccacatgcctatttctttgtgagatttatgtgtagcagaaccaattgctggggcacgctagcgcctttgccccccaaagacgatggaactccttcggatgctatggaatgcaatgtgtgtggaagtgttaagaaagatgaggagattagtggtcatggacaaaatgggctctctttggatggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

395

Amino Acids

43.24

Weight (kDa)

4.67

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 206 - 255 6.7e-08 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AccB7I CCANNNNNTGG 2 cut(s) 934, 1050
AccBSI CCGCTC 2 cut(s) 119, 325
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 736
AcoI YGGCCR 3 cut(s) 76, 331, 546
AcsI RAATTY 2 cut(s) 593, 624
AcuI CTGAAG 1 cut(s) 416
AfiI CCNNNNNNNGG 6 cut(s) 71, 329, 445, 928, 934, 1050
AgsI TTSAA 3 cut(s) 169, 649, 974
AjnI CCWGG 3 cut(s) 414, 777, 927
AluBI AGCT 6 cut(s) 362, 529, 762, 959, 983, 995
AluI AGCT 6 cut(s) 362, 529, 762, 959, 983, 995
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 665
AlwNI CAGNNNCTG 4 cut(s) 421, 469, 514, 959
Aor13HI TCCGGA 1 cut(s) 736
AoxI GGCC 5 cut(s) 76, 331, 436, 546, 636
ApeKI GCWGC 4 cut(s) 421, 505, 508, 699
ApoI RAATTY 2 cut(s) 593, 624
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
Asp700I GAANNNNTTC 1 cut(s) 1093
AspLEI GCGC 2 cut(s) 541, 1066
AspS9I GGNCC 3 cut(s) 355, 436, 919
AsuHPI GGTGA 1 cut(s) 25
AsuNHI GCTAGC 1 cut(s) 1060
AvaII GGWCC 2 cut(s) 355, 919
BaeGI GKGCMC 1 cut(s) 1058
BalI TGGCCA 1 cut(s) 548
BanII GRGCYC 3 cut(s) 531, 585, 1173
Bbv12I GWGCWC 1 cut(s) 531
BbvCI CCTCAGC 2 cut(s) 810, 903
BbvI GCAGC 4 cut(s) 408, 517, 520, 711
BccI CCATC 3 cut(s) 571, 1079, 1175
BceAI ACGGC 3 cut(s) 377, 388, 549
BciT130I CCWGG 3 cut(s) 416, 779, 929
BcoDI GTCTC 1 cut(s) 665
BfaI CTAG 1 cut(s) 1061
BfoI RGCGCY 2 cut(s) 542, 1067
BlpI GCTNAGC 1 cut(s) 60
Bme1390I CCNGG 3 cut(s) 416, 779, 929
Bme18I GGWCC 2 cut(s) 355, 919
BmgT120I GGNCC 3 cut(s) 355, 436, 919
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 3 cut(s) 416, 779, 929
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 833, 1090
BmtI GCTAGC 1 cut(s) 1064
BmuI ACTGGG 1 cut(s) 253
Bpu10I CCTNAGC 3 cut(s) 758, 810, 903
Bpu1102I GCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 969
Bsa29I ATCGAT 1 cut(s) 841
BsaJI CCNNGG 2 cut(s) 549, 633
BsaWI WCCGGW 1 cut(s) 736
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 329, 445, 928, 934, 1050
Bse118I RCCGGY 1 cut(s) 792
Bse1I ACTGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 1120
BseAI TCCGGA 1 cut(s) 736
BseBI CCWGG 3 cut(s) 416, 779, 929
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 2 cut(s) 549, 633
BseGI GGATG 4 cut(s) 726, 919, 1105, 1186
BseLI CCNNNNNNNGG 6 cut(s) 71, 329, 445, 928, 934, 1050
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 6 cut(s) 74, 476, 593, 749, 801, 894
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 9 cut(s) 90, 95, 98, 119, 132, 256, 890, 899, 1157
BseSI GKGCMC 1 cut(s) 1058
BseXI GCAGC 4 cut(s) 408, 517, 520, 711
BseYI CCCAGC 2 cut(s) 959, 1050
BsgI GTGCAG 1 cut(s) 217
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 5 cut(s) 78, 333, 438, 548, 638
BshVI ATCGAT 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 3 cut(s) 330, 737, 793
BslI CCNNNNNNNGG 6 cut(s) 71, 329, 445, 928, 934, 1050
BsmAI GTCTC 1 cut(s) 665
BsmI GAATGC 3 cut(s) 472, 568, 1115
BsnI GGCC 5 cut(s) 78, 333, 438, 548, 638
Bsp1286I GDGCHC 4 cut(s) 531, 585, 1058, 1173
Bsp13I TCCGGA 1 cut(s) 736
Bsp143I GATC 3 cut(s) 372, 605, 838
Bsp1720I GCTNAGC 1 cut(s) 60
BspANI GGCC 5 cut(s) 78, 333, 438, 548, 638
BspCNI CTCAG 6 cut(s) 73, 475, 594, 750, 802, 895
BspDI ATCGAT 1 cut(s) 841
BspEI TCCGGA 1 cut(s) 736
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 582
BspOI GCTAGC 1 cut(s) 1064
BspQI GCTCTTC 1 cut(s) 126
BsrBI CCGCTC 2 cut(s) 119, 325
BsrDI GCAATG 1 cut(s) 1120
BsrFI RCCGGY 1 cut(s) 792
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 792
BssECI CCNNGG 2 cut(s) 549, 633
BssMI GATC 3 cut(s) 372, 605, 838
BssT1I CCWWGG 2 cut(s) 549, 633
Bst2UI CCWGG 3 cut(s) 416, 779, 929
Bst4CI ACNGT 2 cut(s) 350, 516
Bst6I CTCTTC 2 cut(s) 126, 435
BstC8I GCNNGC 8 cut(s) 335, 339, 364, 440, 673, 794, 1058, 1062
BstDEI CTNAG 6 cut(s) 60, 462, 602, 758, 810, 903
BstF5I GGATG 4 cut(s) 726, 919, 1105, 1186
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 2 cut(s) 542, 1067
BstHHI GCGC 2 cut(s) 541, 1066
BstKTI GATC 3 cut(s) 375, 608, 841
BstMAI GTCTC 1 cut(s) 665
BstMBI GATC 3 cut(s) 372, 605, 838
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 162, 213, 508, 545
BstNI CCWGG 3 cut(s) 416, 779, 929
BstNSI RCATGY 1 cut(s) 1010
BstSCI CCNGG 3 cut(s) 414, 777, 927
BstSLI GKGCMC 1 cut(s) 1058
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 408, 517, 520, 711
Bsu15I ATCGAT 1 cut(s) 841
BsuRI GGCC 5 cut(s) 78, 333, 438, 548, 638
BsuTUI ATCGAT 1 cut(s) 841
BtsCI GGATG 4 cut(s) 726, 919, 1105, 1186
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 8 cut(s) 335, 339, 364, 440, 673, 794, 1058, 1062
CaiI CAGNNNCTG 4 cut(s) 421, 469, 514, 959
CfoI GCGC 2 cut(s) 541, 1066
Cfr10I RCCGGY 1 cut(s) 792
Cfr13I GGNCC 3 cut(s) 355, 436, 919
ClaI ATCGAT 1 cut(s) 841
CseI GACGC 1 cut(s) 467
CspCI CAANNNNNGTGG 2 cut(s) 1102, 1137
CviAII CATG 3 cut(s) 653, 1007, 1157
DdeI CTNAG 6 cut(s) 60, 462, 602, 758, 810, 903
DpnI GATC 3 cut(s) 374, 607, 840
DpnII GATC 3 cut(s) 372, 605, 838
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 3 cut(s) 76, 331, 546
Eam1104I CTCTTC 2 cut(s) 126, 435
EarI CTCTTC 2 cut(s) 126, 435
EciI GGCGGA 3 cut(s) 241, 442, 489
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 2 cut(s) 549, 633
Eco147I AGGCCT 1 cut(s) 638
Eco24I GRGCYC 3 cut(s) 531, 585, 1173
Eco47I GGWCC 2 cut(s) 355, 919
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 529
EcoRII CCWGG 3 cut(s) 414, 777, 927
EcoT14I CCWWGG 2 cut(s) 549, 633
EcoT38I GRGCYC 3 cut(s) 531, 585, 1173
ErhI CCWWGG 2 cut(s) 549, 633
FaeI CATG 3 cut(s) 656, 1010, 1160
FaiI YATR 9 cut(s) 621, 654, 687, 819, 911, 1008, 1031, 1106, 1158
FatI CATG 3 cut(s) 652, 1006, 1156
FauI CCCGC 2 cut(s) 330, 346
FokI GGATG 3 cut(s) 733, 926, 1112
FriOI GRGCYC 3 cut(s) 531, 585, 1173
FspBI CTAG 1 cut(s) 1061
GlaI GCGC 2 cut(s) 540, 1065
GsaI CCCAGC 2 cut(s) 963, 1054
HaeII RGCGCY 2 cut(s) 542, 1067
HaeIII GGCC 5 cut(s) 78, 333, 438, 548, 638
HapII CCGG 3 cut(s) 330, 737, 793
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 541, 1066
Hin1II CATG 3 cut(s) 656, 1010, 1160
Hin6I GCGC 2 cut(s) 539, 1064
HinP1I GCGC 2 cut(s) 539, 1064
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 6 cut(s) 95, 449, 724, 802, 944, 950
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 3 cut(s) 330, 737, 793
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 6 cut(s) 480, 592, 868, 949, 955, 1099
Hpy188III TCNNGA 4 cut(s) 298, 370, 728, 737
Hpy8I GTNNAC 1 cut(s) 775
Hpy99I CGWCG 2 cut(s) 409, 461
HpyAV CCTTC 7 cut(s) 36, 238, 597, 689, 884, 932, 1104
HpyCH4III ACNGT 2 cut(s) 350, 516
HpyCH4V TGCA 4 cut(s) 234, 472, 846, 1113
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 213, 508, 545
HpyF3I CTNAG 6 cut(s) 60, 462, 602, 758, 810, 903
Hsp92II CATG 3 cut(s) 656, 1010, 1160
HspAI GCGC 2 cut(s) 539, 1064
Kpn2I TCCGGA 1 cut(s) 736
KroI GCCGGC 1 cut(s) 792
KroNI GCCGGC 1 cut(s) 794
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 3 cut(s) 372, 605, 838
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 4 cut(s) 139, 221, 526, 580
Lsp1109I GCAGC 4 cut(s) 408, 517, 520, 711
LweI GCATC 2 cut(s) 833, 1090
MaeI CTAG 1 cut(s) 1061
MaeIII GTNAC 2 cut(s) 394, 965
MalI GATC 3 cut(s) 374, 607, 840
MbiI CCGCTC 2 cut(s) 119, 325
MboI GATC 3 cut(s) 372, 605, 838
MboII GAAGA 2 cut(s) 113, 422
MfeI CAATTG 2 cut(s) 241, 1045
MhlI GDGCHC 4 cut(s) 531, 585, 1058, 1173
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 6 cut(s) 241, 302, 310, 593, 624, 1045
MluNI TGGCCA 1 cut(s) 548
MlyI GAGTC 3 cut(s) 89, 443, 796
Mox20I TGGCCA 1 cut(s) 548
MroI TCCGGA 1 cut(s) 736
MroNI GCCGGC 1 cut(s) 792
MroXI GAANNNNTTC 1 cut(s) 1093
MscI TGGCCA 1 cut(s) 548
MseI TTAA 2 cut(s) 774, 1131
Msp20I TGGCCA 1 cut(s) 548
MspI CCGG 3 cut(s) 330, 737, 793
MspR9I CCNGG 3 cut(s) 416, 779, 929
MunI CAATTG 2 cut(s) 241, 1045
Mva1269I GAATGC 3 cut(s) 472, 568, 1115
MvaI CCWGG 3 cut(s) 416, 779, 929
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 4 cut(s) 162, 213, 508, 545
NaeI GCCGGC 1 cut(s) 794
NdeII GATC 3 cut(s) 372, 605, 838
NgoMIV GCCGGC 1 cut(s) 792
NheI GCTAGC 1 cut(s) 1060
NlaIII CATG 3 cut(s) 656, 1010, 1160
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 2 cut(s) 394, 965
NspI RCATGY 1 cut(s) 1010
PceI AGGCCT 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 3 cut(s) 472, 568, 1115
PdiI GCCGGC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 1093
PfeI GAWTC 3 cut(s) 724, 944, 950
PflMI CCANNNNNTGG 2 cut(s) 934, 1050
PleI GAGTC 3 cut(s) 89, 443, 796
PpsI GAGTC 3 cut(s) 89, 443, 796
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 3 cut(s) 414, 777, 927
PspFI CCCAGC 2 cut(s) 959, 1050
PspGI CCWGG 3 cut(s) 414, 777, 927
PspN4I GGNNCC 1 cut(s) 582
PspPI GGNCC 3 cut(s) 355, 436, 919
PstNI CAGNNNCTG 4 cut(s) 421, 469, 514, 959
SacI GAGCTC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 774, 1131
Sau3AI GATC 3 cut(s) 372, 605, 838
Sau96I GGNCC 3 cut(s) 355, 436, 919
SchI GAGTC 3 cut(s) 89, 443, 796
ScrFI CCNGG 3 cut(s) 416, 779, 929
SduI GDGCHC 4 cut(s) 531, 585, 1058, 1173
SfaNI GCATC 2 cut(s) 833, 1090
SinI GGWCC 2 cut(s) 355, 919
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
Sse9I AATT 6 cut(s) 241, 302, 310, 593, 624, 1045
SseBI AGGCCT 1 cut(s) 638
SspMI CTAG 1 cut(s) 1061
SstI GAGCTC 1 cut(s) 531
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 3 cut(s) 414, 777, 927
StyI CCWWGG 2 cut(s) 549, 633
TaaI ACNGT 2 cut(s) 350, 516
TaqI TCGA 5 cut(s) 407, 485, 608, 788, 841
TasI AATT 6 cut(s) 241, 302, 310, 593, 624, 1045
TauI GCSGC 8 cut(s) 59, 78, 257, 344, 380, 445, 505, 539
TfiI GAWTC 3 cut(s) 724, 944, 950
Tru1I TTAA 2 cut(s) 774, 1131
Tru9I TTAA 2 cut(s) 774, 1131
TscAI CASTG 1 cut(s) 167
TseFI GTSAC 2 cut(s) 394, 965
TseI GCWGC 4 cut(s) 421, 505, 508, 699
Tsp45I GTSAC 2 cut(s) 394, 965
TspDTI ATGAA 2 cut(s) 575, 708
TspGWI ACGGA 2 cut(s) 38, 719
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 2 cut(s) 934, 1050
VpaK11BI GGWCC 2 cut(s) 355, 919
XapI RAATTY 2 cut(s) 593, 624
XceI RCATGY 1 cut(s) 1010
XmnI GAANNNNTTC 1 cut(s) 1093
XspI CTAG 1 cut(s) 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.