Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005664.1

Orthogroup ID

OG0001708

Physical Location & Seq

Genomic Coordinates Forward (+)

11994 .. 18835

Gene Structure 6842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

atggaattcctgcaactcccctcttccttgagggaaatcttttcaggcgctgtctctgaggatcgggtttgggccgcgctagtattggttggactggctgtctgtttggagtacattggtggcgttgtgggagccgttccgactgcggtgggtgttggtggtgttgagttccagatagggatgtcgaattgtagtggtgggggagggctgtggcctcgggctaccaagatcggggttagttgcgccgtcagtcatcacgtggcggctggtagcatgcggcgatttctggcctgcatacagagcgcgtcggtggcctgcagatggatttgggggtctgtttctgatccagatctgggacccgggtcctacccggttcttgagctggttcttggtttgggcctgggcaaggttagcgacggagtgttaccccctactcgacgcatttcggtgtgtggaggtatggtgcaccatatcattggtaccttttttcatttctttaacaaggccagtgacggaaggttacccgctactcgatgcatatctctgcatggagggatggtgcaccatatcgtcggaaaagatctcttgccacaagcagcttcaatagttccaaggacaaatggcacagcagaagtaaatactgctgttttgagtttggaaggaactaaacaaagaataaagaagatgttcaacaaggttgatctctctgtttcatcatatgacactgcttgggtggcaatggtcccttctccaaattccgggagggagcctttcttccctgaatgcataaattggttgttagataatcaacttcatgatggctcatggggtcctcctaatccgcatcagttgttaacaaaagatgccctcttatccacgttagcatgcatccttgcactaaagcgatggaatattggtgaagaactaattgacaagggtctgcattttattgagtcaaatttagcttcagctactgatggagatcaaccatctcctgttgggtttgatataatatttccttccatgattgaatctgcaatgaatttggatgtgaatctacctttgggaggattaaccttagatgctttacttctcaggagagactttgagcttcaaagaggcagcagaagcaactcagaggggtggagagcctatctcgcatatatttcagaaggaattggaaagtcacaggactgggagatggtcatgaagtaccagaagaagaatgggtccttgtttaactcaccatcaactactgctgctgcttttactcacctcaacaatgctggttgtcttagttatctacgctcactcatagaaaagtttggaagtgcagttccaacgatttatcctctagacaactatgctcgcctttctatggtttccagtcttgaaagtatgggagttgatcgacatttcagggaggaaataaggagtgtactcgatgaaacatacagatgctggctgcagggggatgaagatatattttcagatgctggcacctgtgctatggcatttagactcttacgttttcatggatatgatgtttctgcagatccattaagtcaattttcagaagacagtttcttcaattcccttggaggatatctgaaggacactggtgctgccttagaactttttagggcttcagaagtcatcattcatccagatgaatcagttctagagaaacaacattactggacaagtcatttcttgaaacaggaattatcaaataacttaactcaggctcacagactcaataagcatattgatcaggtggatgatgctcttcggtttccttcctatgcaactctgggtcggttatcaagcaggaaagcaataaaatattacaacactgatagtacaaagattttaaaatcttcttatcgttgttcaaatgttgggaatgaagacttcctaaaactggcagtggaagacttcaatatgtgtcaatcgatacatcgggaagaactcgagtatctttcaaggtgggttgtcgagagcagattagacaagctagaatttgctaggcagaagcaggcatactgttacttctctgctgctgcaacccttttccctcctgaactatcagatgcccgcatatcatgggccaaaaacggagtgcttacaactgtggttgatgatttctttgatgttggaggttctgaagaggaactagtaaaccttatacaattgatcgagaagtgggatgtgaatgcaaaaactgattcttgttctgagcaagttgaaatcatattttcagcaattaagagcacaattaatgagattggagccaatgcattcccacggcaacagcgcagtgtaacaaatcacgtcatagagatttggttggatttggttaagtctatgctgaaggaagctcagtggttgataaacaatttggcgccagcactggatgaatacatggaaaatgcgtatgtatcatttgccttgggaccgattgtgcttccagctctctatttggtagggcctaagctctcagaggaggctgtacggagtttcgaattccaccagttgtataaacttatgagcaccggtgggcgtcttctcaatgatatgcaaacctttaagagggaatctgcggaagggaagctaaatgctgttacattggccatgcttcatggcaatggcagtgctactgaagaagagaccttcagtgagatgaagagcattatagccattaagaggagagaactgcaaaggctagttttgcagaaggatagcttagttccaagagcttgcaaggacctgtattggaacatgtgcaaaattgtgcacctattttatgcaaagcacgatggattcactgggcatgacttgatgaaaaccgtaaatggactaaccgaagaaccgatcattctcagtggattgcaagtagaaagtaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009899 GO:0009987 GO:0010033 GO:0010333 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

969

Amino Acids

107.53

Weight (kDa)

5.76

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	398 - 592	4.1e-42	Terpene synthase, N-terminal domain
Terpene_synth_C	PF03936	669 - 904	3.7e-68	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	707 - 901	7e-40	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79460
fragaria_vesca	FvH4_3g14116 FvH4_3g14130 FvH4_3g14131 FvH4_3g16270
malus_domestica	MD03G1187200.v1.1 MD10G1215700.v1.1 MD10G1215900.v1.1 MD10G1216200.v1.1
prunus_persica	Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128500_v2.0.a1 Prupe.4G128600_v2.0.a1 Prupe.4G128700_v2.0.a1
pyrus_communis	pycom03g13990 pycom10g18220
rosa_chinensis	RchiOBHm_Chr5g0023441 RchiOBHm_Chr5g0023471 RchiOBHm_Chr5g0023641
rosa_laevigata	RLG00000032721
rosa_multiflora	Rmu_co8406553.1_g000001 Rmu_sc0004593.1_g000004 Rmu_sc0005664.1_g000001 Rmu_sc0005664.1_g000005
rosa_roxburghii	Rroxscaffold_1G00055600 Rroxscaffold_1G00055620 Rroxscaffold_1G00055910
rosa_rugosa	Rorug05G0079200 Rorug05G0079300
rosa_samantha	Rh5AG166100 Rh5AG166200 Rh5AG166300 Rh5AG167600 Rh5AG168000 Rh5BG165300 Rh5BG165500 Rh5CG180300 Rh5CG180400 Rh5CG181400 Rh5DG166800 Rh5DG166900 Rh5DG167800
rosa_wichuraiana	Rw0G019600 Rw5G014950 Rw5G014970 Rw5G015110 Rw5G015120 Rw5G015210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	479
AccB1I	GGYRCC	3 cut(s)	479, 1499, 2404
AccII	CGCG	2 cut(s)	77, 305
AciI	CCGC	8 cut(s)	75, 146, 263, 277, 525, 842, 2098, 2603
AclWI	GGATC	3 cut(s)	69, 338, 1550
AcoI	YGGCCR	1 cut(s)	2631
AcsI	RAATTY	6 cut(s)	5, 754, 958, 1042, 2021, 2525
AcuI	CTGAAG	7 cut(s)	951, 1631, 1632, 2187, 2393, 2659, 2682
AcvI	CACGTG	1 cut(s)	259
AcyI	GRCGYC	2 cut(s)	2405, 2563
AfaI	GTAC	6 cut(s)	113, 481, 1214, 1440, 1864, 2514
AflIII	ACRYGT	1 cut(s)	2781
AgeI	ACCGGT	1 cut(s)	2555
AhdI	GACNNNNNGTC	1 cut(s)	98
AhlI	ACTAGT	1 cut(s)	2176
AjiI	CACGTC	1 cut(s)	2335
AjnI	CCWGG	1 cut(s)	399
AjuI	GAANNNNNNNTTGG	2 cut(s)	1046, 1078
AloI	GAACNNNNNNTCC	2 cut(s)	1320, 1352
Alw21I	GWGCWC	5 cut(s)	468, 564, 2276, 2555, 2799
Alw26I	GTCTC	3 cut(s)	58, 1095, 2663
Alw44I	GTGCAC	3 cut(s)	464, 560, 2795
AlwI	GGATC	3 cut(s)	69, 338, 1550
AlwNI	CAGNNNCTG	4 cut(s)	50, 974, 1461, 1496
Ama87I	CYCGRG	3 cut(s)	216, 359, 1973
AoxI	GGCC	9 cut(s)	72, 212, 288, 312, 397, 504, 2109, 2489, 2631
ApaLI	GTGCAC	3 cut(s)	464, 560, 2795
ApeKI	GCWGC	8 cut(s)	596, 1122, 1259, 1262, 1465, 1625, 2060, 2063
ApoI	RAATTY	6 cut(s)	5, 754, 958, 1042, 2021, 2525
AseI	ATTAAT	1 cut(s)	2280
AsiGI	ACCGGT	1 cut(s)	2555
Asp700I	GAANNNNTTC	2 cut(s)	686, 1677
Asp718I	GGTACC	1 cut(s)	479
AspLEI	GCGC	6 cut(s)	50, 79, 245, 305, 2319, 2407
AsuC2I	CCSGG	4 cut(s)	360, 361, 371, 760
AsuHPI	GGTGA	3 cut(s)	929, 1236, 1265
AsuII	TTCGAA	1 cut(s)	2523
AvaI	CYCGRG	3 cut(s)	216, 359, 1973
AvaII	GGWCC	7 cut(s)	356, 363, 742, 830, 1230, 2456, 2767
BaeGI	GKGCMC	3 cut(s)	468, 564, 2799
BaeI	ACNNNNGTAYC	2 cut(s)	1961, 1994
BalI	TGGCCA	1 cut(s)	2633
BanI	GGYRCC	3 cut(s)	479, 1499, 2404
BarI	GAAGNNNNNNTAC	2 cut(s)	2027, 2059
BbrPI	CACGTG	1 cut(s)	259
BbsI	GAAGAC	4 cut(s)	1584, 1917, 1941, 2558
Bbv12I	GWGCWC	5 cut(s)	468, 564, 2276, 2555, 2799
BbvI	GCAGC	8 cut(s)	608, 1134, 1246, 1249, 1452, 1612, 2047, 2050
BccI	CCATC	9 cut(s)	315, 550, 812, 900, 971, 997, 1195, 1255, 2813
BceAI	ACGGC	3 cut(s)	119, 230, 2324
BciT130I	CCWGG	1 cut(s)	401
BclI	TGATCA	1 cut(s)	1771
BcnI	CCSGG	4 cut(s)	360, 361, 371, 760
BcoDI	GTCTC	3 cut(s)	58, 1095, 2663
BcuI	ACTAGT	1 cut(s)	2176
BfaI	CTAG	7 cut(s)	80, 1355, 1682, 2018, 2028, 2177, 2726
BfmI	CTRYAG	3 cut(s)	316, 1466, 1551
BfoI	RGCGCY	2 cut(s)	51, 2408
BglII	AGATCT	2 cut(s)	349, 580
Bme1390I	CCNGG	5 cut(s)	360, 361, 371, 401, 760
Bme18I	GGWCC	7 cut(s)	356, 363, 742, 830, 1230, 2456, 2767
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmeT110I	CYCGRG	3 cut(s)	216, 359, 1973
BmgBI	CACGTC	1 cut(s)	2335
BmrFI	CCNGG	5 cut(s)	360, 361, 371, 401, 760
BmrI	ACTGGG	2 cut(s)	1204, 2838
BmsI	GCATC	9 cut(s)	524, 853, 853, 897, 1072, 1448, 1483, 1774, 2083
BmuI	ACTGGG	2 cut(s)	1204, 2838
BoxI	GACNNNNGTC	2 cut(s)	361, 936
BpiI	GAAGAC	4 cut(s)	1584, 1917, 1941, 2558
BplI	GAGNNNNNCTC	2 cut(s)	1140, 1172
Bpu10I	CCTNAGC	1 cut(s)	2493
Bpu14I	TTCGAA	1 cut(s)	2523
BpuEI	CTTGAG	2 cut(s)	49, 398
BpuMI	CCSGG	4 cut(s)	360, 361, 371, 760
Bsa29I	ATCGAT	1 cut(s)	1955
BsaAI	YACGTR	1 cut(s)	259
BsaBI	GATNNNNATC	4 cut(s)	348, 538, 981, 1053
BsaHI	GRCGYC	2 cut(s)	2405, 2563
BsaI	GGTCTC	1 cut(s)	2663
BsaJI	CCNNGG	7 cut(s)	215, 359, 400, 611, 1597, 2306, 2451
BsaWI	WCCGGW	1 cut(s)	2555
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 543, 573
Bse118I	RCCGGY	1 cut(s)	2555
Bse3DI	GCAATG	3 cut(s)	744, 1044, 2653
Bse8I	GATNNNNATC	4 cut(s)	348, 538, 981, 1053
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	1955
BseDI	CCNNGG	7 cut(s)	215, 359, 400, 611, 1597, 2306, 2451
BseGI	GGATG	9 cut(s)	186, 561, 888, 1054, 1480, 1663, 1786, 2215, 2422
BseJI	GATNNNNATC	4 cut(s)	348, 538, 981, 1053
BseMI	GCAATG	3 cut(s)	744, 1044, 2653
BseMII	CTCAG	8 cut(s)	48, 1108, 1149, 1757, 2229, 2396, 2514, 2896
BseRI	GAGGAG	2 cut(s)	2519, 2722
BseSI	GKGCMC	3 cut(s)	468, 564, 2799
BseXI	GCAGC	8 cut(s)	608, 1134, 1246, 1249, 1452, 1612, 2047, 2050
BsgI	GTGCAG	1 cut(s)	1353
Bsh1236I	CGCG	2 cut(s)	77, 305
BshFI	GGCC	9 cut(s)	74, 214, 290, 314, 399, 506, 2111, 2491, 2633
BshNI	GGYRCC	3 cut(s)	479, 1499, 2404
BshTI	ACCGGT	1 cut(s)	2555
BshVI	ATCGAT	1 cut(s)	1955
BsiHKAI	GWGCWC	5 cut(s)	468, 564, 2276, 2555, 2799
BsiHKCI	CYCGRG	3 cut(s)	216, 359, 1973
BsiSI	CCGG	4 cut(s)	360, 371, 759, 2556
BslFI	GGGAC	3 cut(s)	369, 728, 2469
BsmAI	GTCTC	3 cut(s)	58, 1095, 2663
BsmFI	GGGAC	3 cut(s)	369, 728, 2469
BsmI	GAATGC	3 cut(s)	788, 2221, 2300
BsnI	GGCC	9 cut(s)	74, 214, 290, 314, 399, 506, 2111, 2491, 2633
Bso31I	GGTCTC	1 cut(s)	2663
BsoBI	CYCGRG	3 cut(s)	216, 359, 1973
Bsp119I	TTCGAA	1 cut(s)	2523
Bsp1286I	GDGCHC	5 cut(s)	468, 564, 2276, 2555, 2799
BspACI	CCGC	8 cut(s)	75, 146, 263, 277, 525, 842, 2098, 2603
BspANI	GGCC	9 cut(s)	74, 214, 290, 314, 399, 506, 2111, 2491, 2633
BspCNI	CTCAG	8 cut(s)	49, 1107, 1148, 1756, 2230, 2395, 2513, 2895
BspDI	ATCGAT	1 cut(s)	1955
BspFNI	CGCG	2 cut(s)	77, 305
BspHI	TCATGA	2 cut(s)	814, 1206
BspMAI	CTGCAG	3 cut(s)	320, 1470, 1555
BspPI	GGATC	3 cut(s)	69, 338, 1550
BspQI	GCTCTTC	2 cut(s)	1794, 2681
BspT104I	TTCGAA	1 cut(s)	2523
BspT107I	GGYRCC	3 cut(s)	479, 1499, 2404
BspTNI	GGTCTC	1 cut(s)	2663
BsrDI	GCAATG	3 cut(s)	744, 1044, 2653
BsrFI	RCCGGY	1 cut(s)	2555
BssAI	RCCGGY	1 cut(s)	2555
BssECI	CCNNGG	7 cut(s)	215, 359, 400, 611, 1597, 2306, 2451
BssNI	GRCGYC	2 cut(s)	2405, 2563
BssT1I	CCWWGG	3 cut(s)	611, 1597, 2451
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	4 cut(s)	1583, 2048, 2134, 2851
Bst6I	CTCTTC	5 cut(s)	28, 1794, 2163, 2661, 2681
BstACI	GRCGYC	2 cut(s)	2405, 2563
BstBAI	YACGTR	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	2523
BstDSI	CCRYGG	1 cut(s)	2306
BstEII	GGTNACC	1 cut(s)	519
BstENI	CCTNNNNNAGG	3 cut(s)	404, 1065, 2590
BstF5I	GGATG	9 cut(s)	186, 561, 888, 1054, 1480, 1663, 1786, 2215, 2422
BstFNI	CGCG	2 cut(s)	77, 305
BstH2I	RGCGCY	2 cut(s)	51, 2408
BstHHI	GCGC	6 cut(s)	50, 79, 245, 305, 2319, 2407
BstMAI	GTCTC	3 cut(s)	58, 1095, 2663
BstMWI	GCNNNNNNNGC	7 cut(s)	300, 311, 411, 734, 1128, 1157, 2731
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	3 cut(s)	277, 888, 2785
BstPAI	GACNNNNGTC	2 cut(s)	361, 936
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	5 cut(s)	358, 359, 369, 399, 758
BstSFI	CTRYAG	3 cut(s)	316, 1466, 1551
BstSLI	GKGCMC	3 cut(s)	468, 564, 2799
BstUI	CGCG	2 cut(s)	77, 305
BstV1I	GCAGC	8 cut(s)	608, 1134, 1246, 1249, 1452, 1612, 2047, 2050
BstV2I	GAAGAC	4 cut(s)	1584, 1917, 1941, 2558
BstX2I	RGATCY	3 cut(s)	349, 580, 1555
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstYI	RGATCY	3 cut(s)	349, 580, 1555
Bsu15I	ATCGAT	1 cut(s)	1955
BsuRI	GGCC	9 cut(s)	74, 214, 290, 314, 399, 506, 2111, 2491, 2633
BsuTUI	ATCGAT	1 cut(s)	1955
BtgI	CCRYGG	1 cut(s)	2306
BtgZI	GCGATG	1 cut(s)	919
BtrI	CACGTC	1 cut(s)	2335
BtsCI	GGATG	9 cut(s)	186, 561, 888, 1054, 1480, 1663, 1786, 2215, 2422
BtsI	GCAGTG	4 cut(s)	723, 1935, 2326, 2659
CaiI	CAGNNNCTG	4 cut(s)	50, 974, 1461, 1496
CciI	TCATGA	2 cut(s)	814, 1206
CfoI	GCGC	6 cut(s)	50, 79, 245, 305, 2319, 2407
Cfr10I	RCCGGY	1 cut(s)	2555
Cfr9I	CCCGGG	1 cut(s)	359
ClaI	ATCGAT	1 cut(s)	1955
CseI	GACGC	3 cut(s)	294, 447, 2552
Csp6I	GTAC	6 cut(s)	112, 480, 1213, 1439, 1863, 2513
CspAI	ACCGGT	1 cut(s)	2555
CviQI	GTAC	6 cut(s)	112, 480, 1213, 1439, 1863, 2513
DinI	GGCGCC	1 cut(s)	2406
DraI	TTTAAA	1 cut(s)	1875
DriI	GACNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	2631
Eam1104I	CTCTTC	5 cut(s)	28, 1794, 2163, 2661, 2681
Eam1105I	GACNNNNNGTC	1 cut(s)	98
EarI	CTCTTC	5 cut(s)	28, 1794, 2163, 2661, 2681
Eco130I	CCWWGG	3 cut(s)	611, 1597, 2451
Eco31I	GGTCTC	1 cut(s)	2663
Eco32I	GATATC	1 cut(s)	1607
Eco47I	GGWCC	7 cut(s)	356, 363, 742, 830, 1230, 2456, 2767
Eco57I	CTGAAG	7 cut(s)	951, 1631, 1632, 2187, 2393, 2659, 2682
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	3 cut(s)	216, 359, 1973
Eco91I	GGTNACC	1 cut(s)	519
EcoNI	CCTNNNNNAGG	3 cut(s)	404, 1065, 2590
EcoO109I	RGGNCCY	6 cut(s)	356, 363, 830, 1230, 2489, 2767
EcoO65I	GGTNACC	1 cut(s)	519
EcoRI	GAATTC	2 cut(s)	5, 2525
EcoRII	CCWGG	1 cut(s)	399
EcoRV	GATATC	1 cut(s)	1607
EcoT14I	CCWWGG	3 cut(s)	611, 1597, 2451
EcoT22I	ATGCAT	4 cut(s)	539, 788, 890, 2302
EgeI	GGCGCC	1 cut(s)	2406
EheI	GGCGCC	1 cut(s)	2406
ErhI	CCWWGG	3 cut(s)	611, 1597, 2451
FalI	AAGNNNNNCTT	2 cut(s)	2729, 2761
FaqI	GGGAC	3 cut(s)	369, 728, 2469
FauI	CCCGC	2 cut(s)	532, 2105
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	1771
FokI	GGATG	9 cut(s)	193, 568, 875, 1061, 1487, 1650, 1793, 2222, 2429
FspBI	CTAG	7 cut(s)	80, 1355, 1682, 2018, 2028, 2177, 2726
GlaI	GCGC	6 cut(s)	49, 78, 244, 304, 2318, 2406
HaeII	RGCGCY	2 cut(s)	51, 2408
HaeIII	GGCC	9 cut(s)	74, 214, 290, 314, 399, 506, 2111, 2491, 2633
HapII	CCGG	4 cut(s)	360, 371, 759, 2556
HgaI	GACGC	3 cut(s)	294, 447, 2552
HhaI	GCGC	6 cut(s)	50, 79, 245, 305, 2319, 2407
Hin1I	GRCGYC	2 cut(s)	2405, 2563
Hin6I	GCGC	6 cut(s)	48, 77, 243, 303, 2317, 2405
HinP1I	GCGC	6 cut(s)	48, 77, 243, 303, 2317, 2405
HincII	GTYRAC	1 cut(s)	855
HindII	GTYRAC	1 cut(s)	855
HinfI	GANTC	9 cut(s)	953, 1031, 1054, 1521, 1673, 1755, 2228, 2597, 2823
HpaI	GTTAAC	1 cut(s)	855
HpaII	CCGG	4 cut(s)	360, 371, 759, 2556
HphI	GGTGA	3 cut(s)	929, 1236, 1265
Hpy166II	GTNNAC	6 cut(s)	466, 562, 855, 1439, 2182, 2797
Hpy8I	GTNNAC	6 cut(s)	466, 562, 855, 1439, 2182, 2797
Hpy99I	CGWCG	4 cut(s)	310, 419, 441, 575
HpyCH4III	ACNGT	4 cut(s)	1583, 2048, 2134, 2851
HpyCH4IV	ACGT	4 cut(s)	258, 878, 1528, 2334
HpyF10VI	GCNNNNNNNGC	7 cut(s)	300, 311, 411, 734, 1128, 1157, 2731
HpySE526I	ACGT	4 cut(s)	258, 878, 1528, 2334
Hsp92I	GRCGYC	2 cut(s)	2405, 2563
HspAI	GCGC	6 cut(s)	48, 77, 243, 303, 2317, 2405
KasI	GGCGCC	1 cut(s)	2404
KflI	GGGWCCC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	483
Ksp22I	TGATCA	1 cut(s)	1771
KspAI	GTTAAC	1 cut(s)	855
LguI	GCTCTTC	2 cut(s)	1794, 2681
LmnI	GCTCC	3 cut(s)	131, 766, 2291
Lsp1109I	GCAGC	8 cut(s)	608, 1134, 1246, 1249, 1452, 1612, 2047, 2050
LweI	GCATC	9 cut(s)	524, 853, 853, 897, 1072, 1448, 1483, 1774, 2083
MaeI	CTAG	7 cut(s)	80, 1355, 1682, 2018, 2028, 2177, 2726
MaeII	ACGT	4 cut(s)	258, 878, 1528, 2334
MaeIII	GTNAC	7 cut(s)	423, 509, 519, 1185, 2048, 2323, 2623
MfeI	CAATTG	1 cut(s)	2192
MflI	RGATCY	3 cut(s)	349, 580, 1555
MhlI	GDGCHC	5 cut(s)	468, 564, 2276, 2555, 2799
MlsI	TGGCCA	1 cut(s)	2633
MluNI	TGGCCA	1 cut(s)	2633
Mly113I	GGCGCC	1 cut(s)	2405
MlyI	GAGTC	3 cut(s)	962, 1515, 1749
MmeI	TCCRAC	6 cut(s)	70, 164, 553, 1364, 2137, 2331
Mox20I	TGGCCA	1 cut(s)	2633
Mph1103I	ATGCAT	4 cut(s)	539, 788, 890, 2302
MroXI	GAANNNNTTC	2 cut(s)	686, 1677
MscI	TGGCCA	1 cut(s)	2633
MslI	CAYNNNNRTG	5 cut(s)	446, 1456, 1539, 1668, 2646
Msp20I	TGGCCA	1 cut(s)	2633
MspI	CCGG	4 cut(s)	360, 371, 759, 2556
MspR9I	CCNGG	5 cut(s)	360, 361, 371, 401, 760
MunI	CAATTG	1 cut(s)	2192
Mva1269I	GAATGC	3 cut(s)	788, 2221, 2300
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	2 cut(s)	77, 305
MwoI	GCNNNNNNNGC	7 cut(s)	300, 311, 411, 734, 1128, 1157, 2731
NarI	GGCGCC	1 cut(s)	2405
NciI	CCSGG	4 cut(s)	360, 361, 371, 760
NdeI	CATATG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	509, 1185
NsiI	ATGCAT	4 cut(s)	539, 788, 890, 2302
NspI	RCATGY	3 cut(s)	277, 888, 2785
NspV	TTCGAA	1 cut(s)	2523
PaeI	GCATGC	2 cut(s)	277, 888
PaeR7I	CTCGAG	1 cut(s)	1973
PagI	TCATGA	2 cut(s)	814, 1206
PciI	ACATGT	1 cut(s)	2781
PciSI	GCTCTTC	2 cut(s)	1794, 2681
PctI	GAATGC	3 cut(s)	788, 2221, 2300
PdmI	GAANNNNTTC	2 cut(s)	686, 1677
PfeI	GAWTC	6 cut(s)	1031, 1054, 1673, 2228, 2597, 2823
PfoI	TCCNGGA	1 cut(s)	758
PinAI	ACCGGT	1 cut(s)	2555
PleI	GAGTC	3 cut(s)	961, 1515, 1749
PluTI	GGCGCC	1 cut(s)	2408
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
PpsI	GAGTC	3 cut(s)	961, 1515, 1749
Ppu21I	YACGTR	1 cut(s)	259
PpuMI	RGGWCCY	5 cut(s)	356, 363, 830, 1230, 2767
PscI	ACATGT	1 cut(s)	2781
PshAI	GACNNNNGTC	2 cut(s)	361, 936
PshBI	ATTAAT	1 cut(s)	2280
Psp5II	RGGWCCY	5 cut(s)	356, 363, 830, 1230, 2767
Psp6I	CCWGG	1 cut(s)	399
PspCI	CACGTG	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	399
PspPPI	RGGWCCY	5 cut(s)	356, 363, 830, 1230, 2767
PspXI	VCTCGAGB	1 cut(s)	1973
PstI	CTGCAG	3 cut(s)	320, 1470, 1555
PstNI	CAGNNNCTG	4 cut(s)	50, 974, 1461, 1496
PsuI	RGATCY	3 cut(s)	349, 580, 1555
RsaI	GTAC	6 cut(s)	113, 481, 1214, 1440, 1864, 2514
RsaNI	GTAC	6 cut(s)	112, 480, 1213, 1439, 1863, 2513
RseI	CAYNNNNRTG	5 cut(s)	446, 1456, 1539, 1668, 2646
SapI	GCTCTTC	2 cut(s)	1794, 2681
SchI	GAGTC	3 cut(s)	962, 1515, 1749
ScrFI	CCNGG	5 cut(s)	360, 361, 371, 401, 760
SduI	GDGCHC	5 cut(s)	468, 564, 2276, 2555, 2799
SfaNI	GCATC	9 cut(s)	524, 853, 853, 897, 1072, 1448, 1483, 1774, 2083
SfcI	CTRYAG	3 cut(s)	316, 1466, 1551
SfoI	GGCGCC	1 cut(s)	2406
Sfr274I	CTCGAG	1 cut(s)	1973
SfuI	TTCGAA	1 cut(s)	2523
SgrAI	CRCCGGYG	1 cut(s)	2555
SinI	GGWCC	7 cut(s)	356, 363, 742, 830, 1230, 2456, 2767
SlaI	CTCGAG	1 cut(s)	1973
SmaI	CCCGGG	1 cut(s)	361
SmiMI	CAYNNNNRTG	5 cut(s)	446, 1456, 1539, 1668, 2646
SmlI	CTYRAG	3 cut(s)	28, 377, 1973
SmoI	CTYRAG	3 cut(s)	28, 377, 1973
SpeI	ACTAGT	1 cut(s)	2176
SphI	GCATGC	2 cut(s)	277, 888
SsiI	CCGC	8 cut(s)	75, 146, 263, 277, 525, 842, 2098, 2603
SspDI	GGCGCC	1 cut(s)	2404
SspI	AATATT	3 cut(s)	913, 1014, 1847
SspMI	CTAG	7 cut(s)	80, 1355, 1682, 2018, 2028, 2177, 2726
StyD4I	CCNGG	5 cut(s)	358, 359, 369, 399, 758
StyI	CCWWGG	3 cut(s)	611, 1597, 2451
TaaI	ACNGT	4 cut(s)	1583, 2048, 2134, 2851
TaiI	ACGT	4 cut(s)	261, 881, 1531, 2337
TaqII	GACCGA	1 cut(s)	2473
TatI	WGTACW	3 cut(s)	111, 1438, 1862
TauI	GCSGC	3 cut(s)	77, 266, 280
TfiI	GAWTC	6 cut(s)	1031, 1054, 1673, 2228, 2597, 2823
TseFI	GTSAC	2 cut(s)	509, 1185
TseI	GCWGC	8 cut(s)	596, 1122, 1259, 1262, 1465, 1625, 2060, 2063
Tsp45I	GTSAC	2 cut(s)	509, 1185
TspGWI	ACGGA	4 cut(s)	432, 528, 2133, 2530
TspMI	CCCGGG	1 cut(s)	359
VneI	GTGCAC	3 cut(s)	464, 560, 2795
VpaK11BI	GGWCC	7 cut(s)	356, 363, 742, 830, 1230, 2456, 2767
VspI	ATTAAT	1 cut(s)	2280
XagI	CCTNNNNNAGG	3 cut(s)	404, 1065, 2590
XapI	RAATTY	6 cut(s)	5, 754, 958, 1042, 2021, 2525
XbaI	TCTAGA	2 cut(s)	1354, 1681
XceI	RCATGY	3 cut(s)	277, 888, 2785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1223
XhoI	CTCGAG	1 cut(s)	1973
XmaI	CCCGGG	1 cut(s)	359
XmnI	GAANNNNTTC	2 cut(s)	686, 1677
XspI	CTAG	7 cut(s)	80, 1355, 1682, 2018, 2028, 2177, 2726
Zsp2I	ATGCAT	4 cut(s)	539, 788, 890, 2302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.