Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

1018058 .. 1019247

Gene Structure 1190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGTCCTTCAAGTTGATGTCTTCTTCCAATTCCGACTTGTCTCGCCGTAATTCTTCTTCTGCTTCATCTTCCCCTTCTATAAGATCATCGCACCATCTCCGACCAAATCCTCACGCCGATCACTCCAGAATCAGTTTCGCTTACGGCGGAGGAGTCAACGATTACACTTTCGCGTCTGATTCAAAGCCCTTCGAGATGGCGATTGATGTTGATCGGAGTATCGGAGATCGGAACAGCGTTAACAACGGAAAGAGTGTTGACGATGTTTGGAAAGAGATTGTATCTGGAGAGCAAAAGACGATCATGATGAAGGAAGAAGAACCAGAAGATATAATGACACTTGAGGATTTCTTAGCGAAAGCAGAAATGGACGAGGGAGCTTCAGATGAAATCGATGTGAAGATTCCAACGGAGAGACTCAACAACGACGGTAGCTATACATTTGATTTTCCGATGCAGCGACACAGTTCGTTCCAGATGGTTGAAGGATCAATGGGTGGAGGAGTAACGAGAGGAAAGAGAGGGAGAGTGATGATGGAGGCAATGGATAAAGCTGCAGCTCAGAGACAGAAGAGGATGATCAAGAACCGTGAATCCGCTGCTAGGTCTCGAGAGAGGAAACAGGCTTATCAGGTTGAGTTAGAGACTTTGGCTGCCAAGTTAGAGGAGGAGAATGAGCAGCTTTTGAAGGAGATTGAAGAGAGCACTAAAGAGAGATACAAGAAGCTCATGGAGGTTCTGATTCCGGTCGATGAGAAACCAAGGCCACCGTCGAGGCCCTTAAGCAGGAGCCATTCCTTGGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

270

Amino Acids

30.59

Weight (kDa)

5.68

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	186 - 247	1.7e-17	bZIP transcription factor
bZIP_2	PF07716	187 - 239	4.8e-11	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	150, 600
AclWI	GGATC	1 cut(s)	499
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	606, 789, 802, 807
AflII	CTTAAG	1 cut(s)	784
AgsI	TTSAA	5 cut(s)	13, 186, 488, 691, 701
AloI	GAACNNNNNNTCC	2 cut(s)	581, 613
AluBI	AGCT	6 cut(s)	383, 438, 557, 563, 685, 730
AluI	AGCT	6 cut(s)	383, 438, 557, 563, 685, 730
Alw21I	GWGCWC	1 cut(s)	710
Alw26I	GTCTC	5 cut(s)	48, 412, 562, 615, 641
AlwI	GGATC	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	2 cut(s)	767, 779
ApeKI	GCWGC	6 cut(s)	460, 557, 560, 602, 656, 682
AspS9I	GGNCC	1 cut(s)	780
AvaI	CYCGRG	1 cut(s)	612
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
BbsI	GAAGAC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	710
BbvI	GCAGC	6 cut(s)	472, 544, 572, 589, 643, 694
BccI	CCATC	4 cut(s)	105, 193, 475, 532
BceAI	ACGGC	2 cut(s)	33, 163
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	5 cut(s)	48, 412, 562, 615, 641
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	784
BisI	GCNGC	6 cut(s)	461, 558, 561, 603, 657, 683
BlsI	GCNGC	6 cut(s)	462, 559, 562, 604, 658, 684
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	780
BmiI	GGNNCC	1 cut(s)	794
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	2 cut(s)	112, 309
BpuEI	CTTGAG	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	615
BsaJI	CCNNGG	2 cut(s)	764, 801
BsaWI	WCCGGW	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	4 cut(s)	606, 789, 802, 807
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	764, 801
BseGI	GGATG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	4 cut(s)	606, 789, 802, 807
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	578
BseRI	GAGGAG	4 cut(s)	168, 519, 683, 686
BseXI	GCAGC	6 cut(s)	472, 544, 572, 589, 643, 694
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	769, 781
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	710
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	749
BslI	CCNNNNNNNGG	4 cut(s)	606, 789, 802, 807
BsmAI	GTCTC	5 cut(s)	48, 412, 562, 615, 641
BsnI	GGCC	2 cut(s)	769, 781
Bso31I	GGTCTC	1 cut(s)	615
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
BspACI	CCGC	2 cut(s)	150, 600
BspANI	GGCC	2 cut(s)	769, 781
BspCNI	CTCAG	1 cut(s)	577
BspDI	ATCGAT	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	794
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	499
BspTI	CTTAAG	1 cut(s)	784
BspTNI	GGTCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	764, 801
BssMI	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	764, 801
Bst4CI	ACNGT	4 cut(s)	434, 470, 593, 774
Bst6I	CTCTTC	2 cut(s)	569, 696
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	784
BstDEI	CTNAG	2 cut(s)	355, 564
BstENI	CCTNNNNNAGG	1 cut(s)	787
BstF5I	GGATG	1 cut(s)	585
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	7 cut(s)	89, 124, 217, 232, 306, 494, 585
BstMAI	GTCTC	5 cut(s)	48, 412, 562, 615, 641
BstMBI	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
BstMCI	CGRYCG	1 cut(s)	753
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	6 cut(s)	472, 544, 572, 589, 643, 694
BstV2I	GAAGAC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	769, 781
BsuTUI	ATCGAT	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	585
CciI	TCATGA	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	780
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	1 cut(s)	165
CviAII	CATG	2 cut(s)	307, 733
DdeI	CTNAG	2 cut(s)	355, 564
DpnI	GATC	7 cut(s)	88, 123, 216, 231, 305, 493, 584
DpnII	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
Eam1104I	CTCTTC	2 cut(s)	569, 696
EarI	CTCTTC	2 cut(s)	569, 696
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	764, 801
Eco31I	GGTCTC	1 cut(s)	615
Eco57I	CTGAAG	1 cut(s)	369
Eco88I	CYCGRG	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	780
EcoT14I	CCWWGG	2 cut(s)	764, 801
ErhI	CCWWGG	2 cut(s)	764, 801
FaeI	CATG	2 cut(s)	310, 736
FaiI	YATR	5 cut(s)	83, 308, 335, 441, 734
FatI	CATG	2 cut(s)	306, 732
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	461, 558, 561, 603, 657, 683
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	6 cut(s)	461, 558, 561, 603, 657, 683
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	6 cut(s)	461, 558, 561, 603, 657, 683
GsuI	CTGGAG	2 cut(s)	112, 309
HaeIII	GGCC	2 cut(s)	769, 781
HapII	CCGG	1 cut(s)	749
HgaI	GACGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	310, 736
HincII	GTYRAC	3 cut(s)	160, 244, 262
HindII	GTYRAC	3 cut(s)	160, 244, 262
HinfI	GANTC	7 cut(s)	132, 156, 182, 406, 420, 596, 745
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	749
Hpy166II	GTNNAC	3 cut(s)	160, 244, 262
Hpy188III	TCNNGA	8 cut(s)	129, 196, 288, 307, 478, 586, 612, 614
Hpy8I	GTNNAC	3 cut(s)	160, 244, 262
Hpy99I	CGWCG	2 cut(s)	434, 778
HpyAV	CCTTC	6 cut(s)	19, 87, 202, 307, 482, 685
HpyCH4III	ACNGT	4 cut(s)	434, 470, 593, 774
HpyCH4V	TGCA	2 cut(s)	460, 560
HpyF3I	CTNAG	2 cut(s)	355, 564
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	310, 736
Ksp22I	TGATCA	1 cut(s)	582
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
LmnI	GCTCC	2 cut(s)	380, 792
LpnPI	CCDG	8 cut(s)	142, 273, 339, 491, 611, 620, 762, 775
Lsp1109I	GCAGC	6 cut(s)	472, 544, 572, 589, 643, 694
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	7 cut(s)	88, 123, 216, 231, 305, 493, 584
MboI	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	2 cut(s)	31, 52
MlyI	GAGTC	2 cut(s)	165, 414
MmeI	TCCRAC	3 cut(s)	60, 127, 434
MseI	TTAA	2 cut(s)	243, 785
MspA1I	CMGCKG	1 cut(s)	602
MspCI	CTTAAG	1 cut(s)	784
MspI	CCGG	1 cut(s)	749
MvnI	CGCG	1 cut(s)	176
NdeII	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
NlaIII	CATG	2 cut(s)	310, 736
NlaIV	GGNNCC	1 cut(s)	794
PaeR7I	CTCGAG	1 cut(s)	612
PagI	TCATGA	1 cut(s)	306
PfeI	GAWTC	5 cut(s)	132, 182, 406, 596, 745
PflMI	CCANNNNNTGG	1 cut(s)	802
PkrI	GCNGC	6 cut(s)	462, 559, 562, 604, 658, 684
PleI	GAGTC	2 cut(s)	164, 414
PpsI	GAGTC	2 cut(s)	164, 414
PspN4I	GGNNCC	1 cut(s)	794
PspPI	GGNCC	1 cut(s)	780
PstI	CTGCAG	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	243, 785
SatI	GCNGC	6 cut(s)	461, 558, 561, 603, 657, 683
Sau3AI	GATC	7 cut(s)	86, 121, 214, 229, 303, 491, 582
Sau96I	GGNCC	1 cut(s)	780
SchI	GAGTC	2 cut(s)	165, 414
SduI	GDGCHC	1 cut(s)	710
SetI	ASST	9 cut(s)	385, 440, 559, 565, 611, 639, 687, 732, 741
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	612
SlaI	CTCGAG	1 cut(s)	612
SmlI	CTYRAG	3 cut(s)	344, 612, 784
SmoI	CTYRAG	3 cut(s)	344, 612, 784
Sse9I	AATT	2 cut(s)	31, 52
SsiI	CCGC	2 cut(s)	150, 600
SspMI	CTAG	1 cut(s)	606
StyI	CCWWGG	2 cut(s)	764, 801
TaaI	ACNGT	4 cut(s)	434, 470, 593, 774
TaqI	TCGA	5 cut(s)	195, 396, 613, 753, 776
TasI	AATT	2 cut(s)	31, 52
TfiI	GAWTC	5 cut(s)	132, 182, 406, 596, 745
Tru1I	TTAA	2 cut(s)	243, 785
Tru9I	TTAA	2 cut(s)	243, 785
TseI	GCWGC	6 cut(s)	460, 557, 560, 602, 656, 682
TspDTI	ATGAA	3 cut(s)	57, 326, 405
TspGWI	ACGGA	2 cut(s)	264, 428
Van91I	CCANNNNNTGG	1 cut(s)	802
Vha464I	CTTAAG	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	787
XhoI	CTCGAG	1 cut(s)	612
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.