RLG00000013476
BZIP Family

G-box-binding factor 4-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
32106158 .. 32111542
5385 bp
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UTR
Exon/CDS
Intron
RLM00000013476

Sequence Viewer

Length: 960 bp
ATGGCGTCGTCCAAGCTGGTCTCGTCGTCGTCAAATTCCCGCAACTCCGATCCCTCCCGACGCCCCTCTTCCAATTCCACAAAACCCAAACCCTCCTCCTCCTCCTCCTCCGCCGCAGCCGCCAACCAAACCCTAAACACCACCGCCGCCGCCGCCGGCTACATTAATCCCACGCCGGTCCAGCTCGGCTCGATGGCCGTCGACGGCCTCTTCTACAACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAGATAAACCTGATCGACACCGCCGGTTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGTCGGCGCCGCCGCCGCCGAGGCCGAAGACGGTAGACGAGGTCTGGCAGGAGATTGTGTCCGGCGAGAGCCGGAAGGAGTGTAAAGAAGAGGTCCCCGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAAGATAACGACATTAAGGATTTACACCATGTGCCGCCGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGGATGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCAGTCGATCGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGATTCGGAAACGGTGCTGAGGTGGCGGCGAGTGGAGGAGGAAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGCGAGTCTGCGGCAAGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCAATGGCGATTAGATTAGAGGAGGAGAACGAGCGGCTTTTGAAAGAGAAGGCTGAGAGGACCGAGGAGAGACTTAAGCAGCTCATGGAAAATATTATTCCGGTTGTGGAGAAGAGAAGACCATCACGTGCCCTCCGCAGAGTTCGCTCACTGCAATGGTAG

Protein Analysis

320

Amino Acids

34.79

Weight (kDa)

7.8

Isoelectric Point (pI)

63.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 237 - 294 3.8e-11 bZIP transcription factor
bZIP_2 PF07716 237 - 285 2.1e-08 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccBSI CCGCTC 3 cut(s) 519, 531, 832
AccI GTMKAC 2 cut(s) 201, 342
AccII CGCG 2 cut(s) 449, 744
AclWI GGATC 3 cut(s) 44, 600, 613
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 1 cut(s) 34
AcvI CACGTG 1 cut(s) 926
AcyI GRCGYC 3 cut(s) 5, 61, 314
AdeI CACNNNGTG 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 768
AflII CTTAAG 1 cut(s) 872
AgsI TTSAA 3 cut(s) 593, 791, 841
AjnI CCWGG 1 cut(s) 677
AluBI AGCT 5 cut(s) 16, 184, 241, 306, 880
AluI AGCT 5 cut(s) 16, 184, 241, 306, 880
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 25, 497, 862
AlwI GGATC 3 cut(s) 44, 600, 613
Ama87I CYCGRG 2 cut(s) 422, 438
AoxI GGCC 4 cut(s) 195, 205, 329, 441
ApeKI GCWGC 3 cut(s) 116, 707, 877
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 165
AspLEI GCGC 3 cut(s) 250, 316, 449
AspS9I GGNCC 5 cut(s) 178, 400, 441, 759, 858
AvaI CYCGRG 2 cut(s) 422, 438
AvaII GGWCC 4 cut(s) 178, 400, 759, 858
BaeGI GKGCMC 1 cut(s) 931
BamHI GGATCC 1 cut(s) 605
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 2 cut(s) 243, 569
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BbrPI CACGTG 1 cut(s) 926
BbsI GAAGAC 2 cut(s) 341, 922
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 633
BbvI GCAGC 3 cut(s) 128, 694, 889
BccI CCATC 2 cut(s) 187, 928
BceAI ACGGC 2 cut(s) 182, 220
BciT130I CCWGG 1 cut(s) 679
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 3 cut(s) 25, 497, 862
BfoI RGCGCY 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 872
BglI GCCNNNNNGGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 679
Bme18I GGWCC 4 cut(s) 178, 400, 759, 858
BmeT110I CYCGRG 2 cut(s) 422, 438
BmgT120I GGNCC 5 cut(s) 178, 400, 441, 759, 858
BmiI GGNNCC 4 cut(s) 315, 402, 607, 693
BmrFI CCNGG 1 cut(s) 679
BpiI GAAGAC 2 cut(s) 341, 922
Bpu10I CCTNAGC 1 cut(s) 633
BsaAI YACGTR 1 cut(s) 926
BsaHI GRCGYC 3 cut(s) 5, 61, 314
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 234, 326, 678, 861
BsaWI WCCGGW 1 cut(s) 898
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 915, 945
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse118I RCCGGY 4 cut(s) 155, 175, 272, 443
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 959
BseBI CCWGG 1 cut(s) 679
BseDI CCNNGG 4 cut(s) 234, 326, 678, 861
BseGI GGATG 2 cut(s) 543, 735
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMI GCAATG 1 cut(s) 959
BseMII CTCAG 4 cut(s) 518, 554, 624, 843
BseNI ACTGG 1 cut(s) 574
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 3 cut(s) 128, 694, 889
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 2 cut(s) 449, 744
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 4 cut(s) 197, 207, 331, 443
BshNI GGYRCC 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 2 cut(s) 422, 438
BsiSI CCGG 8 cut(s) 156, 176, 273, 369, 379, 444, 500, 899
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 3 cut(s) 25, 497, 862
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 4 cut(s) 197, 207, 331, 443
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 2 cut(s) 422, 438
Bsp1286I GDGCHC 3 cut(s) 243, 569, 931
Bsp143I GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
Bsp68I TCGCGA 1 cut(s) 744
BspANI GGCC 4 cut(s) 197, 207, 331, 443
BspCNI CTCAG 4 cut(s) 519, 555, 625, 844
BspFNI CGCG 2 cut(s) 449, 744
BspLI GGNNCC 4 cut(s) 315, 402, 607, 693
BspPI GGATC 3 cut(s) 44, 600, 613
BspT107I GGYRCC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 25
BsrBI CCGCTC 3 cut(s) 519, 531, 832
BsrDI GCAATG 1 cut(s) 959
BsrFI RCCGGY 4 cut(s) 155, 175, 272, 443
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 4 cut(s) 155, 175, 272, 443
BssECI CCNNGG 4 cut(s) 234, 326, 678, 861
BssMI GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
BssNI GRCGYC 3 cut(s) 5, 61, 314
Bst2UI CCWGG 1 cut(s) 679
Bst4CI ACNGT 2 cut(s) 340, 629
Bst6I CTCTTC 5 cut(s) 73, 215, 390, 665, 905
BstACI GRCGYC 3 cut(s) 5, 61, 314
BstAFI CTTAAG 1 cut(s) 872
BstBAI YACGTR 1 cut(s) 926
BstC8I GCNNGC 4 cut(s) 157, 298, 445, 777
BstDEI CTNAG 4 cut(s) 527, 563, 633, 852
BstF5I GGATG 2 cut(s) 543, 735
BstFNI CGCG 2 cut(s) 449, 744
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 3 cut(s) 250, 316, 449
BstKTI GATC 7 cut(s) 52, 264, 553, 558, 582, 608, 735
BstMAI GTCTC 3 cut(s) 25, 497, 862
BstMBI GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
BstMCI CGRYCG 1 cut(s) 582
BstNI CCWGG 1 cut(s) 679
BstSCI CCNGG 1 cut(s) 677
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 2 cut(s) 449, 744
BstV1I GCAGC 3 cut(s) 128, 694, 889
BstV2I GAAGAC 2 cut(s) 341, 922
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuRI GGCC 4 cut(s) 197, 207, 331, 443
BtsCI GGATG 2 cut(s) 543, 735
BtsI GCAGTG 1 cut(s) 947
BtsIMutI CAGTG 2 cut(s) 560, 947
BtuMI TCGCGA 1 cut(s) 744
Cac8I GCNNGC 4 cut(s) 157, 298, 445, 777
CfoI GCGC 3 cut(s) 250, 316, 449
Cfr10I RCCGGY 4 cut(s) 155, 175, 272, 443
Cfr13I GGNCC 5 cut(s) 178, 400, 441, 759, 858
CseI GACGC 2 cut(s) 69, 289
CviAII CATG 2 cut(s) 482, 883
DdeI CTNAG 4 cut(s) 527, 563, 633, 852
DinI GGCGCC 1 cut(s) 315
DpnI GATC 7 cut(s) 51, 263, 552, 557, 581, 607, 734
DpnII GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
DraIII CACNNNGTG 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 5 cut(s) 73, 215, 390, 665, 905
EarI CTCTTC 5 cut(s) 73, 215, 390, 665, 905
EciI GGCGGA 2 cut(s) 100, 280
Ecl136II GAGCTC 1 cut(s) 241
Eco24I GRGCYC 2 cut(s) 243, 569
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 4 cut(s) 178, 400, 759, 858
Eco53kI GAGCTC 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 926
Eco88I CYCGRG 2 cut(s) 422, 438
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 677
EcoT38I GRGCYC 2 cut(s) 243, 569
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 2 cut(s) 485, 886
FaiI YATR 3 cut(s) 483, 611, 884
FaqI GGGAC 1 cut(s) 386
FatI CATG 2 cut(s) 481, 882
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 732
FblI GTMKAC 2 cut(s) 201, 342
FokI GGATG 2 cut(s) 550, 742
FriOI GRGCYC 2 cut(s) 243, 569
GlaI GCGC 3 cut(s) 249, 315, 448
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 4 cut(s) 197, 207, 331, 443
HapII CCGG 8 cut(s) 156, 176, 273, 369, 379, 444, 500, 899
HgaI GACGC 2 cut(s) 69, 289
HhaI GCGC 3 cut(s) 250, 316, 449
Hin1I GRCGYC 3 cut(s) 5, 61, 314
Hin1II CATG 2 cut(s) 485, 886
Hin6I GCGC 3 cut(s) 248, 314, 447
HinP1I GCGC 3 cut(s) 248, 314, 447
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 5 cut(s) 418, 618, 739, 746, 797
HpaII CCGG 8 cut(s) 156, 176, 273, 369, 379, 444, 500, 899
Hpy166II GTNNAC 2 cut(s) 202, 343
Hpy188I TCNGA 4 cut(s) 49, 238, 555, 623
Hpy188III TCNNGA 6 cut(s) 57, 422, 583, 736, 743, 762
Hpy8I GTNNAC 2 cut(s) 202, 343
Hpy99I CGWCG 7 cut(s) 10, 28, 31, 63, 203, 206, 313
HpyAV CCTTC 3 cut(s) 376, 651, 841
HpyCH4III ACNGT 2 cut(s) 340, 629
HpyCH4IV ACGT 1 cut(s) 925
HpyCH4V TGCA 2 cut(s) 710, 952
HpyF3I CTNAG 4 cut(s) 527, 563, 633, 852
HpySE526I ACGT 1 cut(s) 925
Hsp92I GRCGYC 3 cut(s) 5, 61, 314
Hsp92II CATG 2 cut(s) 485, 886
HspAI GCGC 3 cut(s) 248, 314, 447
KasI GGCGCC 1 cut(s) 313
KroI GCCGGC 2 cut(s) 155, 443
KroNI GCCGGC 2 cut(s) 157, 445
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
LmnI GCTCC 2 cut(s) 238, 691
Lsp1109I GCAGC 3 cut(s) 128, 694, 889
MaeII ACGT 1 cut(s) 925
MalI GATC 7 cut(s) 51, 263, 552, 557, 581, 607, 734
MbiI CCGCTC 3 cut(s) 519, 531, 832
MboI GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
MboII GAAGA 9 cut(s) 60, 202, 346, 407, 467, 598, 682, 922, 927
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 3 cut(s) 243, 569, 931
MluCI AATT 3 cut(s) 34, 73, 791
Mly113I GGCGCC 1 cut(s) 314
MlyI GAGTC 3 cut(s) 412, 755, 806
MmeI TCCRAC 1 cut(s) 595
MroNI GCCGGC 2 cut(s) 155, 443
MseI TTAA 3 cut(s) 165, 468, 873
MslI CAYNNNNRTG 1 cut(s) 952
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 8 cut(s) 156, 176, 273, 369, 379, 444, 500, 899
MspR9I CCNGG 1 cut(s) 679
MvaI CCWGG 1 cut(s) 679
MvnI CGCG 2 cut(s) 449, 744
NaeI GCCGGC 2 cut(s) 157, 445
NarI GGCGCC 1 cut(s) 314
NdeII GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
NgoMIV GCCGGC 2 cut(s) 155, 443
NlaIII CATG 2 cut(s) 485, 886
NlaIV GGNNCC 4 cut(s) 315, 402, 607, 693
NmeAIII GCCGAG 2 cut(s) 165, 351
NruI TCGCGA 1 cut(s) 744
PaeR7I CTCGAG 1 cut(s) 422
PdiI GCCGGC 2 cut(s) 157, 445
PfeI GAWTC 2 cut(s) 618, 739
PflFI GACNNNGTC 1 cut(s) 347
Ple19I CGATCG 1 cut(s) 582
PleI GAGTC 3 cut(s) 412, 754, 805
PluTI GGCGCC 1 cut(s) 317
PmaCI CACGTG 1 cut(s) 926
PmlI CACGTG 1 cut(s) 926
PpsI GAGTC 3 cut(s) 412, 754, 805
Ppu21I YACGTR 1 cut(s) 926
PpuMI RGGWCCY 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 677
PspCI CACGTG 1 cut(s) 926
PspGI CCWGG 1 cut(s) 677
PspN4I GGNNCC 4 cut(s) 315, 402, 607, 693
PspPI GGNCC 5 cut(s) 178, 400, 441, 759, 858
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 1 cut(s) 605
PsyI GACNNNGTC 1 cut(s) 347
PvuI CGATCG 1 cut(s) 582
RruI TCGCGA 1 cut(s) 744
RseI CAYNNNNRTG 1 cut(s) 952
SacI GAGCTC 1 cut(s) 243
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 165, 468, 873
Sau3AI GATC 7 cut(s) 49, 261, 550, 555, 579, 605, 732
Sau96I GGNCC 5 cut(s) 178, 400, 441, 759, 858
SchI GAGTC 3 cut(s) 412, 755, 806
ScrFI CCNGG 1 cut(s) 679
SduI GDGCHC 3 cut(s) 243, 569, 931
SfoI GGCGCC 1 cut(s) 315
Sfr274I CTCGAG 1 cut(s) 422
SgrDI CGTCGACG 1 cut(s) 200
SinI GGWCC 4 cut(s) 178, 400, 759, 858
SlaI CTCGAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 952
SmlI CTYRAG 2 cut(s) 422, 872
SmoI CTYRAG 2 cut(s) 422, 872
Sse9I AATT 3 cut(s) 34, 73, 791
SspDI GGCGCC 1 cut(s) 313
SspI AATATT 1 cut(s) 892
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 677
TaaI ACNGT 2 cut(s) 340, 629
TaiI ACGT 1 cut(s) 928
TaqI TCGA 8 cut(s) 191, 201, 243, 264, 423, 549, 578, 582
TaqII GACCGA 1 cut(s) 875
TasI AATT 3 cut(s) 34, 73, 791
TfiI GAWTC 2 cut(s) 618, 739
Tru1I TTAA 3 cut(s) 165, 468, 873
Tru9I TTAA 3 cut(s) 165, 468, 873
TscAI CASTG 2 cut(s) 567, 954
TseI GCWGC 3 cut(s) 116, 707, 877
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 567, 954
Tth111I GACNNNGTC 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 4 cut(s) 178, 400, 759, 858
VspI ATTAAT 1 cut(s) 165
XapI RAATTY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 2 cut(s) 201, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.