Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

17737874 .. 17739949

Gene Structure 2076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACGTCGTTTCAGGTGATGCGTTCTTCAAATTCGAGAAACTCGGATCTATCTCGTCGCATCTCTTCTGCTTCTACTTCTTCTTCGTCTATAAGACCTCAACAACAGTTCCGGCGAGATCTAACAAGTGTCGGTTACGGCGGAAGAAACGACGGATTATACAGTTCAAATTCGATGACGGTCGAAGGGATTTTACACGATACTTTCGCATCAGATCCACCAGCACCAACGGAATCTTCACTCTTAGATGCGTCGATAAATCTGATGGATGCTTCTCCAGCACCAATGGAGATAACAACAACGACGGCTTCTGATGTTGTGGATCACGGCGGAGGAACGGAGACGACGCGTGGTGGGAAGAGTGTTGATGAGATTTGGAGAGAGATGGTATCAGGAGAAGGTAAAGGGATGAAGGAAGAGACGTCGGAAGAGATAATGACGTTAGAGGATTTTCTAGCGAAAGCTGCGGTGGAAGACGAAACAGCGGTGACGGCGTCGGCGGAGGATTTGGATGTGAAGATTCCGGTGACGAATTACGGATTCGATCATTCTGCACCGCCGCATAATCCGTTTCAGATGATTGATAAAGTAGAAGGATCAATAGTTGCGTTTGGGAATGGTTTAGATGTTTACGGAGGAGGAGCTAGAGGGAAGAGAGCGAGAGTGATGGTTGAGCCATTGGATAAAGCAGCTGCACAGAGACAGAGAAGGATGATTAAGAATCGTGAATCTGCAGCTAGGTCTAGAGAGAGGAAACAAGCTTATCAAGTTGAGTTAGAAGCTTTGGCTGCGAAGCTTGAGGAAGAGAATGAGTTGCTTTCTAAGGAGATTGAAGATAAGAGGAAAGAGAGATACCAGAAGTTGATGGAGTTTGTGATTCCTGTTGTTGAGAAACCGAAGCAGCAGCCACCACGGTTTTTACGCAGGATTCGGTCTTTGGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

315

Amino Acids

34.95

Weight (kDa)

5.41

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	230 - 290	6.6e-15	bZIP transcription factor
bZIP_2	PF07716	231 - 283	9.5e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 425
AccII	CGCG	1 cut(s)	349
AciI	CCGC	7 cut(s)	141, 330, 467, 485, 500, 557, 560
AclWI	GGATC	4 cut(s)	54, 209, 330, 604
AcsI	RAATTY	2 cut(s)	31, 169
AcyI	GRCGYC	3 cut(s)	5, 422, 494
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	3 cut(s)	30, 168, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	220, 252
AluBI	AGCT	7 cut(s)	464, 644, 692, 737, 761, 782, 796
AluI	AGCT	7 cut(s)	464, 644, 692, 737, 761, 782, 796
Alw26I	GTCTC	3 cut(s)	335, 413, 694
AlwI	GGATC	4 cut(s)	54, 209, 330, 604
ApeKI	GCWGC	7 cut(s)	464, 689, 692, 734, 788, 901, 904
ApoI	RAATTY	2 cut(s)	31, 169
AsuHPI	GGTGA	3 cut(s)	28, 499, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	7 cut(s)	451, 679, 701, 746, 775, 913, 916
BccI	CCATC	4 cut(s)	259, 379, 661, 859
BceAI	ACGGC	4 cut(s)	154, 321, 343, 507
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BcoDI	GTCTC	3 cut(s)	335, 413, 694
BfaI	CTAG	4 cut(s)	455, 645, 738, 744
BfmI	CTRYAG	1 cut(s)	732
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	8 cut(s)	465, 560, 690, 693, 735, 789, 902, 905
BlsI	GCNGC	8 cut(s)	466, 561, 691, 694, 736, 790, 903, 906
BmsI	GCATC	5 cut(s)	9, 69, 218, 238, 259
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	818
BsaHI	GRCGYC	3 cut(s)	5, 422, 494
BsaJI	CCNNGG	1 cut(s)	911
BsaWI	WCCGGW	1 cut(s)	523
BseDI	CCNNGG	1 cut(s)	911
BseGI	GGATG	4 cut(s)	274, 414, 517, 717
BseRI	GAGGAG	2 cut(s)	651, 654
BseXI	GCAGC	7 cut(s)	451, 679, 701, 746, 775, 913, 916
BsgI	GTGCAG	2 cut(s)	537, 678
Bsh1236I	CGCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	112, 524
BsmAI	GTCTC	3 cut(s)	335, 413, 694
BsmBI	CGTCTC	2 cut(s)	335, 413
Bsp143I	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
BspACI	CCGC	7 cut(s)	141, 330, 467, 485, 500, 557, 560
BspFNI	CGCG	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	4 cut(s)	54, 209, 330, 604
BssECI	CCNNGG	1 cut(s)	911
BssMI	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
BssNI	GRCGYC	3 cut(s)	5, 422, 494
Bst4CI	ACNGT	4 cut(s)	108, 164, 181, 915
Bst6I	CTCTTC	6 cut(s)	70, 353, 411, 423, 647, 798
BstACI	GRCGYC	3 cut(s)	5, 422, 494
BstDEI	CTNAG	2 cut(s)	244, 822
BstDSI	CCRYGG	1 cut(s)	911
BstF5I	GGATG	4 cut(s)	274, 414, 517, 717
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	6 cut(s)	49, 121, 217, 325, 547, 599
BstMAI	GTCTC	3 cut(s)	335, 413, 694
BstMBI	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 464, 491, 788
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	7 cut(s)	451, 679, 701, 746, 775, 913, 916
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	3 cut(s)	46, 118, 214
BstYI	RGATCY	3 cut(s)	46, 118, 214
BtgI	CCRYGG	1 cut(s)	911
BtsCI	GGATG	4 cut(s)	274, 414, 517, 717
CseI	GACGC	3 cut(s)	240, 355, 483
DdeI	CTNAG	2 cut(s)	244, 822
DpnI	GATC	6 cut(s)	48, 120, 216, 324, 546, 598
DpnII	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
Eam1104I	CTCTTC	6 cut(s)	70, 353, 411, 423, 647, 798
EarI	CTCTTC	6 cut(s)	70, 353, 411, 423, 647, 798
EciI	GGCGGA	3 cut(s)	156, 345, 515
Esp3I	CGTCTC	2 cut(s)	335, 413
FaiI	YATR	3 cut(s)	92, 160, 564
Fnu4HI	GCNGC	8 cut(s)	465, 560, 690, 693, 735, 789, 902, 905
FokI	GGATG	4 cut(s)	281, 421, 524, 724
Fsp4HI	GCNGC	8 cut(s)	465, 560, 690, 693, 735, 789, 902, 905
FspBI	CTAG	4 cut(s)	455, 645, 738, 744
GluI	GCNGC	8 cut(s)	465, 560, 690, 693, 735, 789, 902, 905
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	2 cut(s)	112, 524
HgaI	GACGC	3 cut(s)	240, 355, 483
Hin1I	GRCGYC	3 cut(s)	5, 422, 494
HindIII	AAGCTT	3 cut(s)	759, 780, 794
HinfI	GANTC	7 cut(s)	233, 520, 540, 721, 728, 877, 928
HpaII	CCGG	2 cut(s)	112, 524
HphI	GGTGA	3 cut(s)	28, 499, 538
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	6 cut(s)	46, 214, 264, 313, 427, 576
Hpy188III	TCNNGA	4 cut(s)	36, 393, 725, 744
Hpy8I	GTNNAC	1 cut(s)	631
Hpy99I	CGWCG	8 cut(s)	10, 60, 155, 256, 307, 349, 427, 499
HpyAV	CCTTC	5 cut(s)	179, 392, 406, 587, 702
HpyCH4III	ACNGT	4 cut(s)	108, 164, 181, 915
HpyCH4IV	ACGT	3 cut(s)	5, 422, 440
HpyCH4V	TGCA	3 cut(s)	554, 695, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 464, 491, 788
HpyF3I	CTNAG	2 cut(s)	244, 822
HpySE526I	ACGT	3 cut(s)	5, 422, 440
Hsp92I	GRCGYC	3 cut(s)	5, 422, 494
Kzo9I	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
LmnI	GCTCC	1 cut(s)	641
LpnPI	CCDG	8 cut(s)	125, 234, 291, 378, 537, 869, 894, 910
Lsp1109I	GCAGC	7 cut(s)	451, 679, 701, 746, 775, 913, 916
LweI	GCATC	5 cut(s)	9, 69, 218, 238, 259
MaeI	CTAG	4 cut(s)	455, 645, 738, 744
MaeII	ACGT	3 cut(s)	5, 422, 440
MaeIII	GTNAC	3 cut(s)	134, 487, 526
MalI	GATC	6 cut(s)	48, 120, 216, 324, 546, 598
MboI	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
MflI	RGATCY	3 cut(s)	46, 118, 214
MluCI	AATT	3 cut(s)	31, 169, 532
MluI	ACGCGT	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	485, 692
MspI	CCGG	2 cut(s)	112, 524
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	4 cut(s)	278, 464, 491, 788
NdeII	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
NmuCI	GTSAC	2 cut(s)	487, 526
PfeI	GAWTC	7 cut(s)	233, 520, 540, 721, 728, 877, 928
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	8 cut(s)	466, 561, 691, 694, 736, 790, 903, 906
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	3 cut(s)	46, 118, 214
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	692
SaqAI	TTAA	1 cut(s)	717
SatI	GCNGC	8 cut(s)	465, 560, 690, 693, 735, 789, 902, 905
Sau3AI	GATC	6 cut(s)	46, 118, 214, 322, 544, 596
SfaNI	GCATC	5 cut(s)	9, 69, 218, 238, 259
SfcI	CTRYAG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	3 cut(s)	31, 169, 532
SsiI	CCGC	7 cut(s)	141, 330, 467, 485, 500, 557, 560
SspMI	CTAG	4 cut(s)	455, 645, 738, 744
TaaI	ACNGT	4 cut(s)	108, 164, 181, 915
TaiI	ACGT	3 cut(s)	8, 425, 443
TaqI	TCGA	5 cut(s)	35, 173, 183, 254, 543
TaqII	GACCGA	1 cut(s)	921
TasI	AATT	3 cut(s)	31, 169, 532
TauI	GCSGC	1 cut(s)	562
TfiI	GAWTC	7 cut(s)	233, 520, 540, 721, 728, 877, 928
Tru1I	TTAA	1 cut(s)	717
Tru9I	TTAA	1 cut(s)	717
TseFI	GTSAC	2 cut(s)	487, 526
TseI	GCWGC	7 cut(s)	464, 689, 692, 734, 788, 901, 904
Tsp45I	GTSAC	2 cut(s)	487, 526
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	6 cut(s)	168, 245, 353, 552, 558, 648
Tth111I	GACNNNGTC	1 cut(s)	493
XapI	RAATTY	2 cut(s)	31, 169
XbaI	TCTAGA	1 cut(s)	743
XspI	CTAG	4 cut(s)	455, 645, 738, 744
ZraI	GACGTC	2 cut(s)	6, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.