Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

21121087 .. 21123994

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGTCGTCGAAGTTAGTATCAGTCTCGACGGCCAATTCGGATCTCCCTCGCGACTCCTCTATATGTTCTCTCTCCACTCTCATCGCCGACGTCGACAAGCACCACCACATCACCATGGACGACCTCCTCAAGAACATCTACAACGACCAGCCCCACCCCTCTCCGCCGCCTCCCGACGCTGGAGGAGCCTCCGCCTCCGCCGCCGCGCCGGGGAGGACCGTGGAGGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGGCGGTGAGGGAGAAGACGCGTCGGCCGATGGAGAGGCGGATCATGTGCGAACAGGTGCAGACGGCGGCGGCGGCGGTCTGGCGGAGATGACATTGGAGGATTTTCTGACCAGGGCTGGGGCCGTGAGGGAGGAGGACGTCGGCGTGGGGCCCGGGACGGTGGTTCCGATGGGGTACGGGCAGTACCAGGTTCAGCCGCCGCCGCCTCCGCCGCCTCGGCCGCATGGGCAGTTGGTGTATGCGAACAACAATGGAACGACGAGTGGTGGAGGTGGGAGAGGAACGAAGAGGAGAGCTGTGCAGGAGGCGCCGCTGGATAAGGCGACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAGTCCGCTGCCAGGTCAAGGGAACGCAAGCAGGCTTACACAAATGAGCTGGAAGCTCTGGTGACGAAGCTGGAGGAGGAAAATGCACTCCTCATTATGGAAGAGGCTGAGCGGAAGAAGGAGAGGTTGAAGAAGCTCATGGAGAACCTCATTCCCATCGAGGAGAAGAGGAGACCTGCACGTGTTCTTCGGAGAGTGCAATCCGTGCACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

278

Amino Acids

29.89

Weight (kDa)

6.21

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	195 - 255	1e-11	bZIP transcription factor
bZIP_2	PF07716	196 - 247	3.7e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	96, 399
Acc36I	ACCTGC	1 cut(s)	802
AccB1I	GGYRCC	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	730
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	3 cut(s)	54, 209, 278
AclWI	GGATC	2 cut(s)	51, 306
AcoI	YGGCCR	3 cut(s)	33, 282, 476
AcvI	CACGTG	1 cut(s)	800
AcyI	GRCGYC	4 cut(s)	5, 93, 396, 566
AfaI	GTAC	2 cut(s)	434, 443
AfiI	CCNNNNNNNGG	7 cut(s)	182, 213, 375, 630, 636, 715, 828
AflIII	ACRYGT	2 cut(s)	276, 799
AgsI	TTSAA	1 cut(s)	748
AjnI	CCWGG	3 cut(s)	368, 444, 629
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	5 cut(s)	554, 667, 674, 688, 754
AluI	AGCT	5 cut(s)	554, 667, 674, 688, 754
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	31, 784
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	51, 306
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	5 cut(s)	33, 282, 378, 407, 476
ApaI	GGGCCC	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	2 cut(s)	586, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
AspLEI	GCGC	2 cut(s)	211, 568
AspS9I	GGNCC	4 cut(s)	219, 378, 407, 408
AsuC2I	CCSGG	3 cut(s)	213, 411, 412
AsuHPI	GGTGA	3 cut(s)	106, 275, 691
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	2 cut(s)	411, 828
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	411
BbrPI	CACGTG	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	2 cut(s)	598, 613
BccI	CCATC	3 cut(s)	281, 421, 782
BceAI	ACGGC	3 cut(s)	48, 337, 365
BciT130I	CCWGG	3 cut(s)	370, 446, 631
BclI	TGATCA	1 cut(s)	606
BcnI	CCSGG	3 cut(s)	213, 411, 412
BcoDI	GTCTC	2 cut(s)	31, 784
BfoI	RGCGCY	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	802
BglI	GCCNNNNNGGC	2 cut(s)	475, 484
BlpI	GCTNAGC	1 cut(s)	726
Bme1390I	CCNGG	6 cut(s)	213, 370, 411, 412, 446, 631
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	4 cut(s)	219, 378, 407, 408
BmiI	GGNNCC	6 cut(s)	190, 379, 408, 409, 423, 567
BmrFI	CCNGG	6 cut(s)	213, 370, 411, 412, 446, 631
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	2 cut(s)	204, 710
Bpu1102I	GCTNAGC	1 cut(s)	726
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	3 cut(s)	213, 411, 412
BsaAI	YACGTR	1 cut(s)	800
BsaHI	GRCGYC	4 cut(s)	5, 93, 396, 566
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	6 cut(s)	117, 212, 222, 369, 410, 473
Bsc4I	CCNNNNNNNGG	7 cut(s)	182, 213, 375, 630, 636, 715, 828
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	833
BseBI	CCWGG	3 cut(s)	370, 446, 631
BseDI	CCNNGG	6 cut(s)	117, 212, 222, 369, 410, 473
BseGI	GGATG	1 cut(s)	609
BseLI	CCNNNNNNNGG	7 cut(s)	182, 213, 375, 630, 636, 715, 828
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	1 cut(s)	833
BseSI	GKGCMC	2 cut(s)	411, 828
BseX3I	CGGCCG	2 cut(s)	282, 476
BseXI	GCAGC	2 cut(s)	598, 613
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	3 cut(s)	336, 578, 780
Bsh1236I	CGCG	3 cut(s)	54, 209, 278
Bsh1285I	CGRYCG	2 cut(s)	285, 479
BshFI	GGCC	5 cut(s)	35, 284, 380, 409, 478
BshNI	GGYRCC	1 cut(s)	565
BsiEI	CGRYCG	2 cut(s)	285, 479
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	3 cut(s)	212, 252, 411
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	7 cut(s)	182, 213, 375, 630, 636, 715, 828
BsmAI	GTCTC	2 cut(s)	31, 784
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	5 cut(s)	35, 284, 380, 409, 478
Bso31I	GGTCTC	1 cut(s)	784
BsoBI	CYCGRG	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	411, 828
Bsp143I	GATC	4 cut(s)	43, 243, 298, 606
Bsp1720I	GCTNAGC	1 cut(s)	726
Bsp19I	CCATGG	1 cut(s)	117
Bsp68I	TCGCGA	1 cut(s)	54
BspANI	GGCC	5 cut(s)	35, 284, 380, 409, 478
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	3 cut(s)	54, 209, 278
BspLI	GGNNCC	6 cut(s)	190, 379, 408, 409, 423, 567
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	2 cut(s)	51, 306
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	784
BsrBI	CCGCTC	1 cut(s)	730
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	833
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	6 cut(s)	117, 212, 222, 369, 410, 473
BssMI	GATC	4 cut(s)	43, 243, 298, 606
BssNI	GRCGYC	4 cut(s)	5, 93, 396, 566
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	370, 446, 631
Bst4CI	ACNGT	2 cut(s)	223, 418
Bst6I	CTCTTC	3 cut(s)	539, 714, 779
BstACI	GRCGYC	4 cut(s)	5, 93, 396, 566
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	253, 647, 651
BstDEI	CTNAG	1 cut(s)	726
BstDSI	CCRYGG	2 cut(s)	117, 222
BstF5I	GGATG	1 cut(s)	609
BstFNI	CGCG	3 cut(s)	54, 209, 278
BstH2I	RGCGCY	1 cut(s)	569
BstHHI	GCGC	2 cut(s)	211, 568
BstKTI	GATC	4 cut(s)	46, 246, 301, 609
BstMAI	GTCTC	2 cut(s)	31, 784
BstMBI	GATC	4 cut(s)	43, 243, 298, 606
BstMCI	CGRYCG	2 cut(s)	285, 479
BstNI	CCWGG	3 cut(s)	370, 446, 631
BstSCI	CCNGG	6 cut(s)	211, 368, 409, 410, 444, 629
BstSLI	GKGCMC	2 cut(s)	411, 828
BstUI	CGCG	3 cut(s)	54, 209, 278
BstV1I	GCAGC	2 cut(s)	598, 613
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BstZI	CGGCCG	2 cut(s)	282, 476
BsuRI	GGCC	5 cut(s)	35, 284, 380, 409, 478
BtgI	CCRYGG	2 cut(s)	117, 222
BtgZI	GCGATG	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	826
BtuMI	TCGCGA	1 cut(s)	54
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	3 cut(s)	253, 647, 651
CfoI	GCGC	2 cut(s)	211, 568
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	219, 378, 407, 408
Cfr9I	CCCGGG	1 cut(s)	410
CseI	GACGC	4 cut(s)	188, 267, 284, 592
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	433, 442
CviAII	CATG	4 cut(s)	118, 302, 482, 757
CviQI	GTAC	2 cut(s)	433, 442
DdeI	CTNAG	1 cut(s)	726
DinI	GGCGCC	1 cut(s)	567
DpnI	GATC	4 cut(s)	45, 245, 300, 608
DpnII	GATC	4 cut(s)	43, 243, 298, 606
EaeI	YGGCCR	3 cut(s)	33, 282, 476
EagI	CGGCCG	2 cut(s)	282, 476
Eam1104I	CTCTTC	3 cut(s)	539, 714, 779
EarI	CTCTTC	3 cut(s)	539, 714, 779
EciI	GGCGGA	7 cut(s)	156, 184, 190, 270, 311, 356, 456
EclXI	CGGCCG	2 cut(s)	282, 476
Eco130I	CCWWGG	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	1 cut(s)	219
Eco52I	CGGCCG	2 cut(s)	282, 476
Eco72I	CACGTG	1 cut(s)	800
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	3 cut(s)	368, 444, 629
EcoT14I	CCWWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	567
EheI	GGCGCC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	121, 305, 485, 760
FaiI	YATR	8 cut(s)	65, 67, 119, 303, 483, 498, 716, 758
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	117, 301, 481, 756
FbaI	TGATCA	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	1 cut(s)	616
FriOI	GRGCYC	1 cut(s)	411
GlaI	GCGC	2 cut(s)	210, 567
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	2 cut(s)	204, 710
HaeII	RGCGCY	1 cut(s)	569
HaeIII	GGCC	5 cut(s)	35, 284, 380, 409, 478
HapII	CCGG	3 cut(s)	212, 252, 411
HgaI	GACGC	4 cut(s)	188, 267, 284, 592
HhaI	GCGC	2 cut(s)	211, 568
Hin1I	GRCGYC	4 cut(s)	5, 93, 396, 566
Hin1II	CATG	4 cut(s)	121, 305, 485, 760
Hin6I	GCGC	2 cut(s)	209, 566
HinP1I	GCGC	2 cut(s)	209, 566
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	56, 620
HpaII	CCGG	3 cut(s)	212, 252, 411
HphI	GGTGA	3 cut(s)	106, 275, 691
Hpy166II	GTNNAC	2 cut(s)	97, 826
Hpy188I	TCNGA	4 cut(s)	43, 366, 426, 810
Hpy188III	TCNNGA	6 cut(s)	28, 53, 133, 176, 235, 610
Hpy8I	GTNNAC	2 cut(s)	97, 826
HpyAV	CCTTC	2 cut(s)	232, 730
HpyCH4III	ACNGT	2 cut(s)	223, 418
HpyCH4IV	ACGT	3 cut(s)	93, 396, 799
HpyCH4V	TGCA	6 cut(s)	317, 559, 704, 797, 817, 826
HpyF3I	CTNAG	1 cut(s)	726
HpySE526I	ACGT	3 cut(s)	93, 396, 799
Hsp92I	GRCGYC	4 cut(s)	5, 93, 396, 566
Hsp92II	CATG	4 cut(s)	121, 305, 485, 760
HspAI	GCGC	2 cut(s)	209, 566
KasI	GGCGCC	1 cut(s)	565
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	43, 243, 298, 606
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	2 cut(s)	598, 613
MabI	ACCWGGT	1 cut(s)	444
MaeII	ACGT	3 cut(s)	93, 396, 799
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	4 cut(s)	45, 245, 300, 608
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	4 cut(s)	43, 243, 298, 606
MboII	GAAGA	7 cut(s)	284, 556, 731, 745, 760, 796, 797
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	411, 828
MluCI	AATT	1 cut(s)	37
MluI	ACGCGT	1 cut(s)	276
Mly113I	GGCGCC	1 cut(s)	566
MlyI	GAGTC	2 cut(s)	50, 629
MreI	CGCCGGCG	1 cut(s)	251
MroNI	GCCGGC	1 cut(s)	251
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	2 cut(s)	571, 626
MspI	CCGG	3 cut(s)	212, 252, 411
MspR9I	CCNGG	6 cut(s)	213, 370, 411, 412, 446, 631
MvaI	CCWGG	3 cut(s)	370, 446, 631
MvnI	CGCG	3 cut(s)	54, 209, 278
NaeI	GCCGGC	1 cut(s)	253
NarI	GGCGCC	1 cut(s)	566
NciI	CCSGG	3 cut(s)	213, 411, 412
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	4 cut(s)	43, 243, 298, 606
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	121, 305, 485, 760
NlaIV	GGNNCC	6 cut(s)	190, 379, 408, 409, 423, 567
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	679
NruI	TCGCGA	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 282, 422
PdiI	GCCGGC	1 cut(s)	253
PleI	GAGTC	2 cut(s)	50, 628
PluTI	GGCGCC	1 cut(s)	569
PmaCI	CACGTG	1 cut(s)	800
PmlI	CACGTG	1 cut(s)	800
PpsI	GAGTC	2 cut(s)	50, 628
Ppu21I	YACGTR	1 cut(s)	800
Psp6I	CCWGG	3 cut(s)	368, 444, 629
PspCI	CACGTG	1 cut(s)	800
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	3 cut(s)	368, 444, 629
PspN4I	GGNNCC	6 cut(s)	190, 379, 408, 409, 423, 567
PspOMI	GGGCCC	1 cut(s)	407
PspPI	GGNCC	4 cut(s)	219, 378, 407, 408
PsuI	RGATCY	1 cut(s)	43
RruI	TCGCGA	1 cut(s)	54
RsaI	GTAC	2 cut(s)	434, 443
RsaNI	GTAC	2 cut(s)	433, 442
RseI	CAYNNNNRTG	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	95
Sau3AI	GATC	4 cut(s)	43, 243, 298, 606
Sau96I	GGNCC	4 cut(s)	219, 378, 407, 408
SchI	GAGTC	2 cut(s)	50, 629
ScrFI	CCNGG	6 cut(s)	213, 370, 411, 412, 446, 631
SduI	GDGCHC	2 cut(s)	411, 828
SexAI	ACCWGGT	1 cut(s)	444
SfoI	GGCGCC	1 cut(s)	567
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	219
SmaI	CCCGGG	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	37
SspDI	GGCGCC	1 cut(s)	565
StyD4I	CCNGG	6 cut(s)	211, 368, 409, 410, 444, 629
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	223, 418
TaiI	ACGT	3 cut(s)	96, 399, 802
TaqI	TCGA	4 cut(s)	11, 29, 96, 777
TasI	AATT	1 cut(s)	37
TscAI	CASTG	1 cut(s)	833
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	2 cut(s)	586, 626
Tsp45I	GTSAC	1 cut(s)	679
TspGWI	ACGGA	1 cut(s)	811
TspMI	CCCGGG	1 cut(s)	410
TspRI	CASTG	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	824
VpaK11BI	GGWCC	1 cut(s)	219
XmaI	CCCGGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	96
ZraI	GACGTC	2 cut(s)	94, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.