Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

1871273 .. 1875110

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCGTCGTTGTCGTCGAGATCACGAAACTCGGATCTCTCCCGACGCCCTTCTTCCAATTTCTCCTCCGCTACAAAGCCCAAGCCCACCACCACCACTGCACACCCGTCTTCCTCCTCTGCGCACCCCCAATCCCTTAACAACTACCAGAACAGCAACACTAGTACGACGCCGGCCCTTCCAATCGGCTCCATGACCGTTGACGGCCTCCTCTACGACTCCAACCCCACCCCTATGACCGACGCCACCCTCTTCAACGCCCAAATTACCCTACTCGACTCCTCCGCAGAAATTAATAGCTCCACTGCGCCGCCGCCGAAGACCGTTGACGAAGTTTGGCGGGAAATTGTGTCCGGCGAATGTCGGAAGGAGTGTAAAGAGGAGGTTCCCGATGAGATGATGACTCTGGAGGACTTTTTGGCTCGGGCCGGGGCCGTGGAAGAGAACGACATTAAGGATTTTCCGCTTGCGCCGCCGCCGCCCGAGACGGAGAGATTGAGCAGCGGAGTGTTTTCCTTCGATCAGATCCCGCTCAGCCCGTTCAGGTCGATTGATAAGGTTGAAGGGTCGATAGTCGGGTTTGGAAATGGGCCGGACCCTGCTGGGAGTGGAGGAGGAGTGAGGAGACGGAAGAGGGGGCGCGCCGTTATGGAGCCGATGGATAAGGCGGCGCAGCAGAGACAGAGAAGGATGATCAAGAACCGGGAATCGGCGGCCAGGTCCAGAGAGAGAAAGCAGGCTTATCAAGTTGAATTGGAGTCATTGGCAGTCCGGTTAGAGGAGGAAAACGAGCAGCTTTTGAAAGAACAGGCTGGGCGGACTCAGGCAAGACTTAAGCAGCTAATGGAAAACATTATTCCGGTTGTGGAGAAGCGAAGACCACCCCGTGTGCTCCGGAGAGTTCGCTCATTGCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

307

Amino Acids

33.99

Weight (kDa)

9.09

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	224 - 270	2.4e-12	bZIP transcription factor
bZIP_2	PF07716	224 - 271	4.5e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	532
AccII	CGCG	1 cut(s)	642
AccIII	TCCGGA	1 cut(s)	894
AclWI	GGATC	2 cut(s)	42, 520
AcoI	YGGCCR	1 cut(s)	714
AcyI	GRCGYC	3 cut(s)	46, 170, 243
AdeI	CACNNNGTG	1 cut(s)	887
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	709, 778
AflII	CTTAAG	1 cut(s)	833
AgsI	TTSAA	4 cut(s)	256, 563, 752, 802
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	3 cut(s)	300, 796, 841
AluI	AGCT	3 cut(s)	300, 796, 841
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	3 cut(s)	479, 619, 673
AlwI	GGATC	2 cut(s)	42, 520
Ama87I	CYCGRG	2 cut(s)	423, 482
Aor13HI	TCCGGA	1 cut(s)	894
AoxI	GGCC	6 cut(s)	174, 205, 426, 432, 590, 714
ApeKI	GCWGC	4 cut(s)	501, 673, 793, 838
AscI	GGCGCGCC	1 cut(s)	640
AseI	ATTAAT	1 cut(s)	294
AspLEI	GCGC	6 cut(s)	124, 310, 472, 642, 644, 673
AspS9I	GGNCC	6 cut(s)	175, 426, 432, 590, 595, 720
AsuC2I	CCSGG	2 cut(s)	430, 704
AvaI	CYCGRG	2 cut(s)	423, 482
AvaII	GGWCC	2 cut(s)	595, 720
BbsI	GAAGAC	3 cut(s)	102, 326, 883
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	4 cut(s)	513, 685, 805, 850
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	3 cut(s)	220, 419, 629
BciT130I	CCWGG	1 cut(s)	718
BclI	TGATCA	1 cut(s)	693
BcnI	CCSGG	2 cut(s)	430, 704
BcoDI	GTCTC	3 cut(s)	479, 619, 673
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	833
BlpI	GCTNAGC	1 cut(s)	533
Bme1390I	CCNGG	3 cut(s)	430, 704, 718
Bme18I	GGWCC	2 cut(s)	595, 720
BmeT110I	CYCGRG	2 cut(s)	423, 482
BmgT120I	GGNCC	6 cut(s)	175, 426, 432, 590, 595, 720
BmiI	GGNNCC	5 cut(s)	190, 387, 433, 597, 654
BmrFI	CCNGG	3 cut(s)	430, 704, 718
BpiI	GAAGAC	3 cut(s)	102, 326, 883
BpmI	CTGGAG	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	533
BpuMI	CCSGG	2 cut(s)	430, 704
BsaHI	GRCGYC	3 cut(s)	46, 170, 243
BsaJI	CCNNGG	2 cut(s)	429, 435
BsaWI	WCCGGW	3 cut(s)	771, 859, 894
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 778
Bse118I	RCCGGY	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	908
BseAI	TCCGGA	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	429, 435
BseGI	GGATG	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	709, 778
BseMI	GCAATG	1 cut(s)	908
BseMII	CTCAG	2 cut(s)	547, 836
BsePI	GCGCGC	1 cut(s)	640
BseRI	GAGGAG	9 cut(s)	55, 106, 200, 271, 395, 627, 630, 637, 794
BseXI	GCAGC	4 cut(s)	513, 685, 805, 850
BseYI	CCCAGC	2 cut(s)	602, 812
BsgI	GTGCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	6 cut(s)	176, 207, 428, 434, 592, 716
BsiHKAI	GWGCWC	1 cut(s)	894
BsiHKCI	CYCGRG	2 cut(s)	423, 482
BsiSI	CCGG	8 cut(s)	173, 354, 429, 593, 703, 772, 860, 895
BslI	CCNNNNNNNGG	2 cut(s)	709, 778
BsmAI	GTCTC	3 cut(s)	479, 619, 673
BsmBI	CGTCTC	2 cut(s)	479, 619
BsnI	GGCC	6 cut(s)	176, 207, 428, 434, 592, 716
BsoBI	CYCGRG	2 cut(s)	423, 482
Bsp1286I	GDGCHC	1 cut(s)	894
Bsp13I	TCCGGA	1 cut(s)	894
Bsp143I	GATC	5 cut(s)	20, 34, 520, 525, 693
Bsp1720I	GCTNAGC	1 cut(s)	533
BspANI	GGCC	6 cut(s)	176, 207, 428, 434, 592, 716
BspCNI	CTCAG	2 cut(s)	546, 835
BspEI	TCCGGA	1 cut(s)	894
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	5 cut(s)	190, 387, 433, 597, 654
BspPI	GGATC	2 cut(s)	42, 520
BspTI	CTTAAG	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	908
BsrFI	RCCGGY	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	429, 435
BssHII	GCGCGC	1 cut(s)	640
BssMI	GATC	5 cut(s)	20, 34, 520, 525, 693
BssNI	GRCGYC	3 cut(s)	46, 170, 243
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	2 cut(s)	199, 325
Bst6I	CTCTTC	3 cut(s)	257, 435, 626
BstACI	GRCGYC	3 cut(s)	46, 170, 243
BstAFI	CTTAAG	1 cut(s)	833
BstC8I	GCNNGC	4 cut(s)	174, 468, 642, 738
BstDEI	CTNAG	2 cut(s)	533, 822
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	696
BstFNI	CGCG	1 cut(s)	642
BstHHI	GCGC	6 cut(s)	124, 310, 472, 642, 644, 673
BstKTI	GATC	5 cut(s)	23, 37, 523, 528, 696
BstMAI	GTCTC	3 cut(s)	479, 619, 673
BstMBI	GATC	5 cut(s)	20, 34, 520, 525, 693
BstMWI	GCNNNNNNNGC	2 cut(s)	472, 478
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	3 cut(s)	428, 702, 716
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	4 cut(s)	513, 685, 805, 850
BstV2I	GAAGAC	3 cut(s)	102, 326, 883
BstX2I	RGATCY	2 cut(s)	34, 525
BstYI	RGATCY	2 cut(s)	34, 525
BsuRI	GGCC	6 cut(s)	176, 207, 428, 434, 592, 716
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	696
BtsI	GCAGTG	3 cut(s)	96, 303, 920
BtsIMutI	CAGTG	3 cut(s)	96, 303, 920
Cac8I	GCNNGC	4 cut(s)	174, 468, 642, 738
CfoI	GCGC	6 cut(s)	124, 310, 472, 642, 644, 673
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	6 cut(s)	175, 426, 432, 590, 595, 720
CseI	GACGC	3 cut(s)	54, 178, 251
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	193
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	533, 822
DpnI	GATC	5 cut(s)	22, 36, 522, 527, 695
DpnII	GATC	5 cut(s)	20, 34, 520, 525, 693
DraIII	CACNNNGTG	1 cut(s)	887
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	3 cut(s)	257, 435, 626
EarI	CTCTTC	3 cut(s)	257, 435, 626
EciI	GGCGGA	1 cut(s)	832
Eco47I	GGWCC	2 cut(s)	595, 720
Eco88I	CYCGRG	2 cut(s)	423, 482
EcoRII	CCWGG	1 cut(s)	716
Esp3I	CGTCTC	2 cut(s)	479, 619
FaeI	CATG	1 cut(s)	196
FaiI	YATR	3 cut(s)	194, 236, 650
FatI	CATG	1 cut(s)	192
FauI	CCCGC	2 cut(s)	333, 537
FbaI	TGATCA	1 cut(s)	693
FokI	GGATG	1 cut(s)	703
FspBI	CTAG	1 cut(s)	162
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	6 cut(s)	123, 309, 471, 641, 643, 672
GsaI	CCCAGC	2 cut(s)	606, 816
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	6 cut(s)	176, 207, 428, 434, 592, 716
HapII	CCGG	8 cut(s)	173, 354, 429, 593, 703, 772, 860, 895
HgaI	GACGC	3 cut(s)	54, 178, 251
HhaI	GCGC	6 cut(s)	124, 310, 472, 642, 644, 673
Hin1I	GRCGYC	3 cut(s)	46, 170, 243
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	6 cut(s)	122, 308, 470, 640, 642, 671
HinP1I	GCGC	6 cut(s)	122, 308, 470, 640, 642, 671
HincII	GTYRAC	2 cut(s)	202, 328
HindII	GTYRAC	2 cut(s)	202, 328
HinfI	GANTC	6 cut(s)	218, 278, 403, 707, 758, 820
HpaII	CCGG	8 cut(s)	173, 354, 429, 593, 703, 772, 860, 895
Hpy166II	GTNNAC	2 cut(s)	202, 328
Hpy188I	TCNGA	3 cut(s)	34, 366, 525
Hpy188III	TCNNGA	8 cut(s)	18, 24, 42, 389, 407, 697, 723, 895
Hpy8I	GTNNAC	2 cut(s)	202, 328
Hpy99I	CGWCG	5 cut(s)	10, 19, 48, 172, 245
HpyAV	CCTTC	6 cut(s)	60, 188, 361, 526, 557, 681
HpyCH4III	ACNGT	2 cut(s)	199, 325
HpyCH4V	TGCA	2 cut(s)	101, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	472, 478
HpyF3I	CTNAG	2 cut(s)	533, 822
Hsp92I	GRCGYC	3 cut(s)	46, 170, 243
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	6 cut(s)	122, 308, 470, 640, 642, 671
Kpn2I	TCCGGA	1 cut(s)	894
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	5 cut(s)	20, 34, 520, 525, 693
LmnI	GCTCC	4 cut(s)	194, 305, 652, 897
Lsp1109I	GCAGC	4 cut(s)	513, 685, 805, 850
MaeI	CTAG	1 cut(s)	162
MalI	GATC	5 cut(s)	22, 36, 522, 527, 695
MbiI	CCGCTC	1 cut(s)	532
MboI	GATC	5 cut(s)	20, 34, 520, 525, 693
MboII	GAAGA	7 cut(s)	45, 102, 244, 331, 452, 643, 888
MflI	RGATCY	2 cut(s)	34, 525
MhlI	GDGCHC	1 cut(s)	894
MluCI	AATT	5 cut(s)	58, 264, 291, 345, 752
MlyI	GAGTC	5 cut(s)	212, 272, 397, 767, 814
MmeI	TCCRAC	2 cut(s)	246, 344
MroI	TCCGGA	1 cut(s)	894
MroNI	GCCGGC	1 cut(s)	172
MseI	TTAA	4 cut(s)	138, 294, 453, 834
MslI	CAYNNNNRTG	2 cut(s)	233, 913
MspA1I	CMGCKG	1 cut(s)	504
MspCI	CTTAAG	1 cut(s)	833
MspI	CCGG	8 cut(s)	173, 354, 429, 593, 703, 772, 860, 895
MspR9I	CCNGG	3 cut(s)	430, 704, 718
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	2 cut(s)	472, 478
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	2 cut(s)	430, 704
NdeII	GATC	5 cut(s)	20, 34, 520, 525, 693
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	5 cut(s)	190, 387, 433, 597, 654
NsbI	TGCGCA	1 cut(s)	123
PalAI	GGCGCGCC	1 cut(s)	640
PauI	GCGCGC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 14
PdiI	GCCGGC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	707
PleI	GAGTC	5 cut(s)	212, 272, 397, 766, 814
PpsI	GAGTC	5 cut(s)	212, 272, 397, 766, 814
PshBI	ATTAAT	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	716
PspFI	CCCAGC	2 cut(s)	602, 812
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	5 cut(s)	190, 387, 433, 597, 654
PspPI	GGNCC	6 cut(s)	175, 426, 432, 590, 595, 720
PsuI	RGATCY	2 cut(s)	34, 525
PteI	GCGCGC	1 cut(s)	640
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	2 cut(s)	233, 913
SaqAI	TTAA	4 cut(s)	138, 294, 453, 834
Sau3AI	GATC	5 cut(s)	20, 34, 520, 525, 693
Sau96I	GGNCC	6 cut(s)	175, 426, 432, 590, 595, 720
SchI	GAGTC	5 cut(s)	212, 272, 397, 767, 814
ScrFI	CCNGG	3 cut(s)	430, 704, 718
SduI	GDGCHC	1 cut(s)	894
SetI	ASST	7 cut(s)	302, 387, 548, 561, 722, 798, 843
SgsI	GGCGCGCC	1 cut(s)	640
SinI	GGWCC	2 cut(s)	595, 720
SmiMI	CAYNNNNRTG	2 cut(s)	233, 913
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	5 cut(s)	58, 264, 291, 345, 752
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	428, 702, 716
TaaI	ACNGT	2 cut(s)	199, 325
TaqI	TCGA	5 cut(s)	17, 276, 519, 548, 569
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	5 cut(s)	58, 264, 291, 345, 752
TauI	GCSGC	7 cut(s)	313, 316, 475, 478, 481, 671, 716
TfiI	GAWTC	1 cut(s)	707
Tru1I	TTAA	4 cut(s)	138, 294, 453, 834
Tru9I	TTAA	4 cut(s)	138, 294, 453, 834
TscAI	CASTG	3 cut(s)	103, 310, 920
TseI	GCWGC	4 cut(s)	501, 673, 793, 838
TspGWI	ACGGA	2 cut(s)	503, 643
TspRI	CASTG	3 cut(s)	103, 310, 920
Vha464I	CTTAAG	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	595, 720
VspI	ATTAAT	1 cut(s)	294
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.