Rh7DG369200
BZIP Family

G-box-binding factor 4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001805
Physical Location & Seq
Forward (+)
49952827 .. 49956635
3809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG369200.1

Sequence Viewer

Length: 708 bp
ATGGCGTCGTCGAAGTTAGTCTCAGTCTCGACGGCCAATTCGGATCTGCCACGCGACTCCTCTATATGTTCTCTCTCCACTCTCATCGCCGACGTCGACAAGCACAACCACTCCATCACCATGGACGACCTCCTCAAGAACATCTACAACGACCAACCCTCGGCTTCTCCGCCGCCGCCTCCGTCCATGGACGGAGGAGCCTCAGCCTCGGCCGCCGCGCCGGGGAGGACGGTGGAGGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGGAGGAGCTGACGGAGAGGACGAGGCCGCGGAGGGGGAGGCGGATCAGGTGCGGGCGGAGATGACGTTGGAGGATTTTCTGACCAGGGCTGGGGCCGTGAGGGAGGAGGACGTCGGCGTGGGACCCGGGGCGGTGGTTCCGATCGGGTACGGGCAGTTCCAGGTGCAGCAGCCGCCGCCGCCTCAGCCTCAAGGTCAATTGGTGTACGCAAACAACAACAATGGAACAACGAGTGGAGGTGGTGGGAGAGGAACGAAGAGGAGAGCTGTGCAGGAGGCGCCGCTTGATAAGGCGACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAATCCGCTGCCAGGTCAAGGGAACGCAAGCAGGCTTACACAGTGGAGCTAGAATCTCTGGTGACGCAGCTGGAGGAGGAAAATGCACGCCTCATGAGAGAAGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

235

Amino Acids

25.04

Weight (kDa)

4.84

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 188 - 232 1e-12 bZIP transcription factor
bZIP_2 PF07716 189 - 234 3.2e-11 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 96, 381
AccB1I GGYRCC 1 cut(s) 544
AccI GTMKAC 1 cut(s) 96
AccII CGCG 3 cut(s) 54, 218, 296
AclWI GGATC 2 cut(s) 51, 318
AcoI YGGCCR 2 cut(s) 33, 210
AcyI GRCGYC 4 cut(s) 5, 93, 378, 545
AfaI GTAC 2 cut(s) 416, 473
AfiI CCNNNNNNNGG 6 cut(s) 160, 222, 300, 357, 609, 615
AjnI CCWGG 3 cut(s) 350, 426, 608
AloI GAACNNNNNNTCC 2 cut(s) 584, 616
AluBI AGCT 4 cut(s) 275, 533, 646, 667
AluI AGCT 4 cut(s) 275, 533, 646, 667
Alw26I GTCTC 2 cut(s) 25, 31
AlwI GGATC 2 cut(s) 51, 318
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 4 cut(s) 33, 210, 291, 360
ApeKI GCWGC 5 cut(s) 433, 436, 565, 605, 664
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspLEI GCGC 2 cut(s) 220, 547
AspS9I GGNCC 2 cut(s) 360, 389
AsuC2I CCSGG 3 cut(s) 222, 393, 394
AsuHPI GGTGA 2 cut(s) 109, 670
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 389
BanI GGYRCC 1 cut(s) 544
BbvCI CCTCAGC 2 cut(s) 202, 450
BbvI GCAGC 5 cut(s) 445, 448, 577, 592, 676
BccI CCATC 1 cut(s) 122
BceAI ACGGC 2 cut(s) 48, 347
BciT130I CCWGG 3 cut(s) 352, 428, 610
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 3 cut(s) 222, 393, 394
BcoDI GTCTC 2 cut(s) 25, 31
BfaI CTAG 1 cut(s) 647
BfoI RGCGCY 1 cut(s) 548
Bme1390I CCNGG 6 cut(s) 222, 352, 393, 394, 428, 610
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 360, 389
BmiI GGNNCC 6 cut(s) 199, 361, 390, 391, 405, 546
BmrFI CCNGG 6 cut(s) 222, 352, 393, 394, 428, 610
BpmI CTGGAG 1 cut(s) 689
Bpu10I CCTNAGC 2 cut(s) 202, 450
BpuEI CTTGAG 2 cut(s) 119, 441
BpuMI CCSGG 3 cut(s) 222, 393, 394
BsaHI GRCGYC 4 cut(s) 5, 93, 378, 545
BsaJI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 294, 351, 392, 393
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 317, 347
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 222, 300, 357, 609, 615
Bse118I RCCGGY 1 cut(s) 260
BseBI CCWGG 3 cut(s) 352, 428, 610
BseDI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 294, 351, 392, 393
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 6 cut(s) 160, 222, 300, 357, 609, 615
BseMII CTCAG 3 cut(s) 36, 216, 464
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 5 cut(s) 445, 448, 577, 592, 676
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 2 cut(s) 452, 557
Bsh1236I CGCG 3 cut(s) 54, 218, 296
Bsh1285I CGRYCG 2 cut(s) 213, 411
BshFI GGCC 4 cut(s) 35, 212, 293, 362
BshNI GGYRCC 1 cut(s) 544
BsiEI CGRYCG 2 cut(s) 213, 411
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 3 cut(s) 221, 261, 393
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 6 cut(s) 160, 222, 300, 357, 609, 615
BsmAI GTCTC 2 cut(s) 25, 31
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 4 cut(s) 35, 212, 293, 362
BsoBI CYCGRG 1 cut(s) 392
Bsp143I GATC 5 cut(s) 43, 252, 310, 408, 585
Bsp19I CCATGG 2 cut(s) 120, 186
BspANI GGCC 4 cut(s) 35, 212, 293, 362
BspCNI CTCAG 3 cut(s) 35, 215, 463
BspFNI CGCG 3 cut(s) 54, 218, 296
BspHI TCATGA 1 cut(s) 690
BspLI GGNNCC 6 cut(s) 199, 361, 390, 391, 405, 546
BspPI GGATC 2 cut(s) 51, 318
BspT107I GGYRCC 1 cut(s) 544
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 294, 351, 392, 393
BssMI GATC 5 cut(s) 43, 252, 310, 408, 585
BssNI GRCGYC 4 cut(s) 5, 93, 378, 545
BssT1I CCWWGG 2 cut(s) 120, 186
Bst2UI CCWGG 3 cut(s) 352, 428, 610
Bst4CI ACNGT 2 cut(s) 232, 640
Bst6I CTCTTC 2 cut(s) 518, 693
BstACI GRCGYC 4 cut(s) 5, 93, 378, 545
BstC8I GCNNGC 5 cut(s) 262, 321, 626, 630, 685
BstDEI CTNAG 3 cut(s) 22, 202, 450
BstDSI CCRYGG 3 cut(s) 120, 186, 294
BstF5I GGATG 1 cut(s) 588
BstFNI CGCG 3 cut(s) 54, 218, 296
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 2 cut(s) 220, 547
BstKTI GATC 5 cut(s) 46, 255, 313, 411, 588
BstMAI GTCTC 2 cut(s) 25, 31
BstMBI GATC 5 cut(s) 43, 252, 310, 408, 585
BstMCI CGRYCG 2 cut(s) 213, 411
BstMWI GCNNNNNNNGC 7 cut(s) 212, 439, 442, 445, 451, 544, 571
BstNI CCWGG 3 cut(s) 352, 428, 610
BstSCI CCNGG 6 cut(s) 220, 350, 391, 392, 426, 608
BstUI CGCG 3 cut(s) 54, 218, 296
BstV1I GCAGC 5 cut(s) 445, 448, 577, 592, 676
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 4 cut(s) 35, 212, 293, 362
BtgI CCRYGG 3 cut(s) 120, 186, 294
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 5 cut(s) 262, 321, 626, 630, 685
CciI TCATGA 1 cut(s) 690
CfoI GCGC 2 cut(s) 220, 547
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 360, 389
Cfr42I CCGCGG 1 cut(s) 297
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 2 cut(s) 571, 670
Csp6I GTAC 2 cut(s) 415, 472
CviAII CATG 3 cut(s) 121, 187, 691
CviQI GTAC 2 cut(s) 415, 472
DdeI CTNAG 3 cut(s) 22, 202, 450
DinI GGCGCC 1 cut(s) 546
DpnI GATC 5 cut(s) 45, 254, 312, 410, 587
DpnII GATC 5 cut(s) 43, 252, 310, 408, 585
EaeI YGGCCR 2 cut(s) 33, 210
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 518, 693
EarI CTCTTC 2 cut(s) 518, 693
EciI GGCGGA 4 cut(s) 159, 279, 323, 338
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 120, 186
Eco47I GGWCC 1 cut(s) 389
Eco52I CGGCCG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 3 cut(s) 350, 426, 608
EcoT14I CCWWGG 2 cut(s) 120, 186
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 2 cut(s) 120, 186
FaeI CATG 3 cut(s) 124, 190, 694
FaiI YATR 6 cut(s) 65, 67, 122, 188, 692, 706
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 120, 186, 690
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 585
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 595
FspBI CTAG 1 cut(s) 647
GlaI GCGC 2 cut(s) 219, 546
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 689
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 4 cut(s) 35, 212, 293, 362
HapII CCGG 3 cut(s) 221, 261, 393
HgaI GACGC 2 cut(s) 571, 670
HhaI GCGC 2 cut(s) 220, 547
Hin1I GRCGYC 4 cut(s) 5, 93, 378, 545
Hin1II CATG 3 cut(s) 124, 190, 694
Hin6I GCGC 2 cut(s) 218, 545
HinP1I GCGC 2 cut(s) 218, 545
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 56, 599, 650
HpaII CCGG 3 cut(s) 221, 261, 393
HphI GGTGA 2 cut(s) 109, 670
Hpy166II GTNNAC 2 cut(s) 97, 472
Hpy188I TCNGA 3 cut(s) 43, 348, 408
Hpy188III TCNNGA 5 cut(s) 28, 136, 244, 589, 691
Hpy8I GTNNAC 2 cut(s) 97, 472
Hpy99I CGWCG 8 cut(s) 10, 13, 34, 95, 98, 260, 383, 565
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 2 cut(s) 232, 640
HpyCH4IV ACGT 3 cut(s) 93, 332, 378
HpyCH4V TGCA 3 cut(s) 433, 538, 683
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 439, 442, 445, 451, 544, 571
HpyF3I CTNAG 3 cut(s) 22, 202, 450
HpySE526I ACGT 3 cut(s) 93, 332, 378
Hsp92I GRCGYC 4 cut(s) 5, 93, 378, 545
Hsp92II CATG 3 cut(s) 124, 190, 694
HspAI GCGC 2 cut(s) 218, 545
KasI GGCGCC 1 cut(s) 544
KflI GGGWCCC 1 cut(s) 389
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 585
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 5 cut(s) 43, 252, 310, 408, 585
LmnI GCTCC 3 cut(s) 197, 272, 643
Lsp1109I GCAGC 5 cut(s) 445, 448, 577, 592, 676
MaeI CTAG 1 cut(s) 647
MaeII ACGT 3 cut(s) 93, 332, 378
MaeIII GTNAC 1 cut(s) 658
MalI GATC 5 cut(s) 45, 254, 312, 410, 587
MboI GATC 5 cut(s) 43, 252, 310, 408, 585
MboII GAAGA 1 cut(s) 535
MfeI CAATTG 1 cut(s) 464
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 37, 464
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 315
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 3 cut(s) 296, 605, 667
MspI CCGG 3 cut(s) 221, 261, 393
MspR9I CCNGG 6 cut(s) 222, 352, 393, 394, 428, 610
MunI CAATTG 1 cut(s) 464
MvaI CCWGG 3 cut(s) 352, 428, 610
MvnI CGCG 3 cut(s) 54, 218, 296
MwoI GCNNNNNNNGC 7 cut(s) 212, 439, 442, 445, 451, 544, 571
NaeI GCCGGC 1 cut(s) 262
NarI GGCGCC 1 cut(s) 545
NciI CCSGG 3 cut(s) 222, 393, 394
NcoI CCATGG 2 cut(s) 120, 186
NdeII GATC 5 cut(s) 43, 252, 310, 408, 585
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 3 cut(s) 124, 190, 694
NlaIV GGNNCC 6 cut(s) 199, 361, 390, 391, 405, 546
NmeAIII GCCGAG 2 cut(s) 140, 188
NmuCI GTSAC 1 cut(s) 658
PagI TCATGA 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 285
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 599, 650
Ple19I CGATCG 1 cut(s) 411
PleI GAGTC 1 cut(s) 50
PluTI GGCGCC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 389
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 350, 426, 608
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 3 cut(s) 350, 426, 608
PspN4I GGNNCC 6 cut(s) 199, 361, 390, 391, 405, 546
PspPI GGNCC 2 cut(s) 360, 389
PspPPI RGGWCCY 1 cut(s) 389
PsrI GAACNNNNNNTAC 2 cut(s) 407, 439
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 2 cut(s) 416, 473
RsaNI GTAC 2 cut(s) 415, 472
RseI CAYNNNNRTG 1 cut(s) 119
SacII CCGCGG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 95
Sau3AI GATC 5 cut(s) 43, 252, 310, 408, 585
Sau96I GGNCC 2 cut(s) 360, 389
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 6 cut(s) 222, 352, 393, 394, 428, 610
SfoI GGCGCC 1 cut(s) 546
Sfr303I CCGCGG 1 cut(s) 297
SgrAI CRCCGGYG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 134, 456
SmoI CTYRAG 2 cut(s) 134, 456
Sse9I AATT 2 cut(s) 37, 464
SspDI GGCGCC 1 cut(s) 544
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 6 cut(s) 220, 350, 391, 392, 426, 608
StyI CCWWGG 2 cut(s) 120, 186
TaaI ACNGT 2 cut(s) 232, 640
TaiI ACGT 3 cut(s) 96, 335, 381
TaqI TCGA 3 cut(s) 11, 29, 96
TasI AATT 2 cut(s) 37, 464
TauI GCSGC 9 cut(s) 175, 178, 215, 218, 296, 442, 445, 448, 550
TfiI GAWTC 2 cut(s) 599, 650
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 5 cut(s) 433, 436, 565, 605, 664
Tsp45I GTSAC 1 cut(s) 658
TspGWI ACGGA 3 cut(s) 171, 207, 294
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 1 cut(s) 645
VpaK11BI GGWCC 1 cut(s) 389
XmaI CCCGGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 647
ZraI GACGTC 2 cut(s) 94, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.