Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

3250939 .. 3255548

Gene Structure 4610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1026300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGTCGTCGAAGCTAATGTCGTCGTCGTCGTCGTCGAGATCACGAAACTCGGATCTCTCCCGACGCCCTTCTTCCAATTTCTCCCCCGCTACAAAGCCCCAGCCCACCACCACCACTGCACACCCGTCTTCCTCCTCTGCGCACCCCCAATCCCTAAACAACTACCAGAACAGCAACACTAGTACGACGCTGGCCTTTCCAATCGGCTCCATAACCGTTGACGGTCTCCTCTACGACTCCAACCCCACCCCTATGACCGACGCCACCCTCCTCAACGCTCAAATTACCCTACTCGACTCCTCCGCAGAAATTAATAGCTCCACTGCGCCGCCGCCGCCGAAAACTGTTGACGAAGTTTGGCGGGAAATTGTGTCCGGCGAATGTCGGAAGGAGTGTAAAGAGGAGGTTCCCGATGAGATGATGACTCTGGAGGACTTTTTGGCTAGGGCCGGGGCCGTGGAAGAGAACGACATTAAGGATTTTCCGCTTGCGCCGCCGCCGCCCGAGACGGAGAGATTGAGCAGCGGAGTATTTTCCTTTGATCAGATCCCGCTCAGCCCGTTCGGGTCGATTGATAAGGTTGAAGGGTCGATTGTTGGGTTTGGAAATGTGGCGGACCCTGCTGGGAGTGGAGGAGGAGTGGGGAGACGGAAGAGGGGGCGCGCCGTTATGGAGCCGATGGATAAGGCGTCGCAGCAGAGACAGAAAAGGATGATCAAGAACCGGGAATCGGCGGCCAGGTCCAGAGAGAGAAAGCAGGCTTATCAAGATGAATTGGAGTCATTGGCAGTCCGGTTAGAGGAGGAAAACGAGCAGCTTTTGAAAGAACAGGCTGAGCAGACTCAGGGAAGACTTAAGCAGCTAATGGAAAACATCATTCCGGTTGTGGAGAAGCGAAGACCACCCCATGTGCTCCGGAGAGTTCGCTCATTGCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

315

Amino Acids

34.61

Weight (kDa)

6.07

Isoelectric Point (pI)

70.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	232 - 280	1.1e-12	bZIP transcription factor
bZIP_2	PF07716	232 - 281	1.6e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	556
AccII	CGCG	1 cut(s)	666
AccIII	TCCGGA	1 cut(s)	918
AclWI	GGATC	2 cut(s)	63, 544
AcoI	YGGCCR	1 cut(s)	738
AcyI	GRCGYC	4 cut(s)	5, 67, 264, 692
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	733, 802
AflII	CTTAAG	1 cut(s)	857
AgsI	TTSAA	2 cut(s)	587, 826
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	4 cut(s)	16, 321, 820, 865
AluI	AGCT	4 cut(s)	16, 321, 820, 865
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	4 cut(s)	233, 503, 643, 697
AlwI	GGATC	2 cut(s)	63, 544
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	918
AoxI	GGCC	4 cut(s)	195, 450, 456, 738
ApeKI	GCWGC	4 cut(s)	525, 697, 817, 862
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AscI	GGCGCGCC	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	315
AspLEI	GCGC	5 cut(s)	145, 331, 496, 666, 668
AspS9I	GGNCC	4 cut(s)	450, 456, 619, 744
AsuC2I	CCSGG	2 cut(s)	454, 728
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	619, 744
BbsI	GAAGAC	3 cut(s)	123, 859, 907
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	4 cut(s)	537, 709, 829, 874
BccI	CCATC	1 cut(s)	676
BceAI	ACGGC	2 cut(s)	443, 653
BciT130I	CCWGG	1 cut(s)	742
BclI	TGATCA	2 cut(s)	544, 717
BcnI	CCSGG	2 cut(s)	454, 728
BcoDI	GTCTC	4 cut(s)	233, 503, 643, 697
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	183, 447
BfrI	CTTAAG	1 cut(s)	857
BlpI	GCTNAGC	2 cut(s)	557, 837
Bme1390I	CCNGG	3 cut(s)	454, 728, 742
Bme18I	GGWCC	2 cut(s)	619, 744
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	4 cut(s)	450, 456, 619, 744
BmiI	GGNNCC	5 cut(s)	211, 411, 457, 621, 678
BmrFI	CCNGG	3 cut(s)	454, 728, 742
BpiI	GAAGAC	3 cut(s)	123, 859, 907
BpmI	CTGGAG	1 cut(s)	452
Bpu1102I	GCTNAGC	2 cut(s)	557, 837
BpuMI	CCSGG	2 cut(s)	454, 728
BsaHI	GRCGYC	4 cut(s)	5, 67, 264, 692
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	453, 459
BsaWI	WCCGGW	3 cut(s)	795, 883, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 802
Bse3DI	GCAATG	1 cut(s)	932
BseAI	TCCGGA	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	2 cut(s)	453, 459
BseGI	GGATG	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	733, 802
BseMI	GCAATG	1 cut(s)	932
BseMII	CTCAG	3 cut(s)	571, 828, 860
BsePI	GCGCGC	1 cut(s)	664
BseRI	GAGGAG	8 cut(s)	127, 221, 263, 292, 419, 651, 654, 818
BseXI	GCAGC	4 cut(s)	537, 709, 829, 874
BseYI	CCCAGC	2 cut(s)	102, 626
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	4 cut(s)	197, 452, 458, 740
BsiHKAI	GWGCWC	1 cut(s)	918
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	6 cut(s)	378, 453, 727, 796, 884, 919
BslI	CCNNNNNNNGG	2 cut(s)	733, 802
BsmAI	GTCTC	4 cut(s)	233, 503, 643, 697
BsmBI	CGTCTC	2 cut(s)	503, 643
BsnI	GGCC	4 cut(s)	197, 452, 458, 740
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp13I	TCCGGA	1 cut(s)	918
Bsp143I	GATC	5 cut(s)	41, 55, 544, 549, 717
Bsp1720I	GCTNAGC	2 cut(s)	557, 837
BspANI	GGCC	4 cut(s)	197, 452, 458, 740
BspCNI	CTCAG	3 cut(s)	570, 829, 859
BspEI	TCCGGA	1 cut(s)	918
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	5 cut(s)	211, 411, 457, 621, 678
BspPI	GGATC	2 cut(s)	63, 544
BspTI	CTTAAG	1 cut(s)	857
BspTNI	GGTCTC	1 cut(s)	233
BsrBI	CCGCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	932
BssECI	CCNNGG	2 cut(s)	453, 459
BssHII	GCGCGC	1 cut(s)	664
BssMI	GATC	5 cut(s)	41, 55, 544, 549, 717
BssNI	GRCGYC	4 cut(s)	5, 67, 264, 692
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	3 cut(s)	220, 227, 349
Bst6I	CTCTTC	2 cut(s)	459, 650
BstACI	GRCGYC	4 cut(s)	5, 67, 264, 692
BstAFI	CTTAAG	1 cut(s)	857
BstC8I	GCNNGC	4 cut(s)	195, 492, 666, 762
BstDEI	CTNAG	3 cut(s)	557, 837, 846
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	720
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	5 cut(s)	145, 331, 496, 666, 668
BstKTI	GATC	5 cut(s)	44, 58, 547, 552, 720
BstMAI	GTCTC	4 cut(s)	233, 503, 643, 697
BstMBI	GATC	5 cut(s)	41, 55, 544, 549, 717
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 496, 502, 623
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	452, 726, 740
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	4 cut(s)	537, 709, 829, 874
BstV2I	GAAGAC	3 cut(s)	123, 859, 907
BstX2I	RGATCY	2 cut(s)	55, 549
BstYI	RGATCY	2 cut(s)	55, 549
BsuRI	GGCC	4 cut(s)	197, 452, 458, 740
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	720
BtsI	GCAGTG	3 cut(s)	117, 324, 944
BtsIMutI	CAGTG	3 cut(s)	117, 324, 944
Cac8I	GCNNGC	4 cut(s)	195, 492, 666, 762
CfoI	GCGC	5 cut(s)	145, 331, 496, 666, 668
Cfr13I	GGNCC	4 cut(s)	450, 456, 619, 744
CseI	GACGC	4 cut(s)	75, 199, 272, 681
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	911
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	3 cut(s)	557, 837, 846
DpnI	GATC	5 cut(s)	43, 57, 546, 551, 719
DpnII	GATC	5 cut(s)	41, 55, 544, 549, 717
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	459, 650
EarI	CTCTTC	2 cut(s)	459, 650
EciI	GGCGGA	1 cut(s)	632
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	619, 744
Eco88I	CYCGRG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	740
Esp3I	CGTCTC	2 cut(s)	503, 643
FaeI	CATG	1 cut(s)	914
FaiI	YATR	4 cut(s)	215, 257, 674, 912
FatI	CATG	1 cut(s)	910
FauI	CCCGC	3 cut(s)	97, 357, 561
FbaI	TGATCA	2 cut(s)	544, 717
FokI	GGATG	1 cut(s)	727
FspBI	CTAG	2 cut(s)	183, 447
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	5 cut(s)	144, 330, 495, 665, 667
GsaI	CCCAGC	2 cut(s)	106, 630
GsuI	CTGGAG	1 cut(s)	452
HaeIII	GGCC	4 cut(s)	197, 452, 458, 740
HapII	CCGG	6 cut(s)	378, 453, 727, 796, 884, 919
HgaI	GACGC	4 cut(s)	75, 199, 272, 681
HhaI	GCGC	5 cut(s)	145, 331, 496, 666, 668
Hin1I	GRCGYC	4 cut(s)	5, 67, 264, 692
Hin1II	CATG	1 cut(s)	914
Hin6I	GCGC	5 cut(s)	143, 329, 494, 664, 666
HinP1I	GCGC	5 cut(s)	143, 329, 494, 664, 666
HincII	GTYRAC	2 cut(s)	223, 352
HindII	GTYRAC	2 cut(s)	223, 352
HinfI	GANTC	6 cut(s)	239, 299, 427, 731, 782, 844
HpaII	CCGG	6 cut(s)	378, 453, 727, 796, 884, 919
Hpy166II	GTNNAC	2 cut(s)	223, 352
Hpy188I	TCNGA	3 cut(s)	55, 390, 549
Hpy188III	TCNNGA	9 cut(s)	39, 45, 63, 413, 431, 721, 747, 770, 919
Hpy8I	GTNNAC	2 cut(s)	223, 352
HpyAV	CCTTC	3 cut(s)	81, 385, 581
HpyCH4III	ACNGT	3 cut(s)	220, 227, 349
HpyCH4V	TGCA	2 cut(s)	122, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 496, 502, 623
HpyF3I	CTNAG	3 cut(s)	557, 837, 846
Hsp92I	GRCGYC	4 cut(s)	5, 67, 264, 692
Hsp92II	CATG	1 cut(s)	914
HspAI	GCGC	5 cut(s)	143, 329, 494, 664, 666
Kpn2I	TCCGGA	1 cut(s)	918
Ksp22I	TGATCA	2 cut(s)	544, 717
Kzo9I	GATC	5 cut(s)	41, 55, 544, 549, 717
LmnI	GCTCC	4 cut(s)	215, 326, 676, 921
Lsp1109I	GCAGC	4 cut(s)	537, 709, 829, 874
MaeI	CTAG	2 cut(s)	183, 447
MalI	GATC	5 cut(s)	43, 57, 546, 551, 719
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	5 cut(s)	41, 55, 544, 549, 717
MboII	GAAGA	6 cut(s)	66, 123, 476, 667, 864, 912
MflI	RGATCY	2 cut(s)	55, 549
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	5 cut(s)	79, 285, 312, 369, 776
MlyI	GAGTC	5 cut(s)	233, 293, 421, 791, 838
MmeI	TCCRAC	2 cut(s)	267, 368
MroI	TCCGGA	1 cut(s)	918
MseI	TTAA	3 cut(s)	315, 477, 858
MslI	CAYNNNNRTG	2 cut(s)	254, 937
MspA1I	CMGCKG	1 cut(s)	528
MspCI	CTTAAG	1 cut(s)	857
MspI	CCGG	6 cut(s)	378, 453, 727, 796, 884, 919
MspR9I	CCNGG	3 cut(s)	454, 728, 742
MvaI	CCWGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	4 cut(s)	337, 496, 502, 623
NciI	CCSGG	2 cut(s)	454, 728
NdeII	GATC	5 cut(s)	41, 55, 544, 549, 717
NlaIII	CATG	1 cut(s)	914
NlaIV	GGNNCC	5 cut(s)	211, 411, 457, 621, 678
NsbI	TGCGCA	1 cut(s)	144
PalAI	GGCGCGCC	1 cut(s)	664
PauI	GCGCGC	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 32, 35
PfeI	GAWTC	1 cut(s)	731
PleI	GAGTC	5 cut(s)	233, 293, 421, 790, 838
PpsI	GAGTC	5 cut(s)	233, 293, 421, 790, 838
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	740
PspFI	CCCAGC	2 cut(s)	102, 626
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	5 cut(s)	211, 411, 457, 621, 678
PspPI	GGNCC	4 cut(s)	450, 456, 619, 744
PsuI	RGATCY	2 cut(s)	55, 549
PteI	GCGCGC	1 cut(s)	664
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	2 cut(s)	254, 937
SaqAI	TTAA	3 cut(s)	315, 477, 858
Sau3AI	GATC	5 cut(s)	41, 55, 544, 549, 717
Sau96I	GGNCC	4 cut(s)	450, 456, 619, 744
SchI	GAGTC	5 cut(s)	233, 293, 421, 791, 838
ScrFI	CCNGG	3 cut(s)	454, 728, 742
SduI	GDGCHC	1 cut(s)	918
SetI	ASST	7 cut(s)	18, 323, 411, 585, 746, 822, 867
SgsI	GGCGCGCC	1 cut(s)	664
SinI	GGWCC	2 cut(s)	619, 744
SmiMI	CAYNNNNRTG	2 cut(s)	254, 937
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
SpeI	ACTAGT	1 cut(s)	182
Sse9I	AATT	5 cut(s)	79, 285, 312, 369, 776
SspMI	CTAG	2 cut(s)	183, 447
StyD4I	CCNGG	3 cut(s)	452, 726, 740
TaaI	ACNGT	3 cut(s)	220, 227, 349
TaqI	TCGA	5 cut(s)	11, 38, 297, 572, 593
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	5 cut(s)	79, 285, 312, 369, 776
TauI	GCSGC	7 cut(s)	334, 337, 340, 499, 502, 505, 740
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	3 cut(s)	315, 477, 858
Tru9I	TTAA	3 cut(s)	315, 477, 858
TscAI	CASTG	3 cut(s)	124, 331, 944
TseI	GCWGC	4 cut(s)	525, 697, 817, 862
TspDTI	ATGAA	1 cut(s)	789
TspGWI	ACGGA	2 cut(s)	527, 667
TspRI	CASTG	3 cut(s)	124, 331, 944
Vha464I	CTTAAG	1 cut(s)	857
VpaK11BI	GGWCC	2 cut(s)	619, 744
VspI	ATTAAT	1 cut(s)	315
XspI	CTAG	2 cut(s)	183, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.