FvH4_2g13640
BZIP Family

G-box-binding factor 4-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
11924978 .. 11931325
6348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13640.t3

Sequence Viewer

Length: 933 bp
ATGGCGTCGTCGAAGCTGATCTCGTCGTCGGCGTCGTCGTCAAGGTCCCGCAACTCGGATCTCTCCCGACGCCCAAAACCCAAACCCTCGCCGCCTTCTTCTCCCTCCGCCGCCGCCGCCAACCAAGCCCTACAGACCACCACCAACGGTGGAAGTTACATTCACACGGCGAATCCCGCGCCGATGACCGTCGACGGCCTCTTCCGCGACGTCTACAGCAACACCCTTCCCCCGGCCGACGCCCAGATAACTCTGATGGACTCTGCCGGCATGGAAATCAACTCCTTAGGGGCGGCGCCGTCGAGGCCGAAGACGGTGGACGAGGTATGGGAGGAAATTGTGTCCGGGGAGAGCCGGAGGGAGTGTAAAGAAGAGTTGCCGGATGAAATGATGACTCTTGAGGACTTCCTGGCCCGGGCTGGCGCCGTGGAGGAGAACGACGTCAAGGATTTACATCTGGCGCCGCCGCCGGAGACGGAGAGACTGTGCGGAGGACTGAGCGGAGGGATGTTTGGATTCGATCAGATCGCACTGAGCCCGTTTCCGTCGATTGAGAAGATGGAGGGGTCCATTGCTGGCTTCGGAAATGGTGCTGCTGCTGCTGCTGCTGAGGTGGCGGCGAGTGGAGGAAGGGGGAGAGGGAAGAGAGCCCGGGCGGTCTTGGAGCCGCTGGATAAAGCTGCACAGCAGAGGCAGAAGAGGATGATCAAGAATAGGGAGTCAGCTGCGAGGTCCAGGGAGAGGAAGCAGGCCTACCAAGTTGAATTGGAGTCGATGGCAGTTAAATTAGAGGTGGAGAATGAGCAGCTTTTGAGAGAGGAGGCTGAGAGGACTGAGGAAAGACTTAAGCAGCTAATGGAAAATATTATTCCGGTTGTGGAGAAGAGAAGACCATCACGTGTCCTTCGCAGAGTTTGCTCACTGCAATGGTAG

Protein Analysis

311

Amino Acids

33.76

Weight (kDa)

6.29

Isoelectric Point (pI)

68.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 228 - 273 5.2e-12 bZIP transcription factor
bZIP_2 PF07716 228 - 273 1.1e-08 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 213, 444
AccB1I GGYRCC 3 cut(s) 295, 422, 460
AccBSI CCGCTC 1 cut(s) 501
AccI GTMKAC 2 cut(s) 192, 213
AccII CGCG 2 cut(s) 179, 207
AclWI GGATC 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 234
AcvI CACGTG 1 cut(s) 899
AcyI GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
AfiI CCNNNNNNNGG 4 cut(s) 55, 232, 415, 741
AflII CTTAAG 1 cut(s) 845
AflIII ACRYGT 1 cut(s) 898
AgsI TTSAA 1 cut(s) 764
AjnI CCWGG 2 cut(s) 408, 734
AluBI AGCT 5 cut(s) 16, 680, 725, 808, 853
AluI AGCT 5 cut(s) 16, 680, 725, 808, 853
Alw26I GTCTC 2 cut(s) 467, 475
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 2 cut(s) 414, 651
AoxI GGCC 5 cut(s) 196, 234, 305, 411, 750
ApeKI GCWGC 9 cut(s) 593, 596, 599, 602, 605, 680, 725, 805, 850
AspLEI GCGC 4 cut(s) 181, 298, 425, 463
AspS9I GGNCC 4 cut(s) 45, 412, 567, 732
AsuC2I CCSGG 6 cut(s) 233, 346, 415, 416, 652, 653
AvaI CYCGRG 2 cut(s) 414, 651
AvaII GGWCC 3 cut(s) 45, 567, 732
AxyI CCTNAGG 1 cut(s) 286
BanI GGYRCC 3 cut(s) 295, 422, 460
BanII GRGCYC 2 cut(s) 539, 652
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BbrPI CACGTG 1 cut(s) 899
BbsI GAAGAC 2 cut(s) 317, 895
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 9 cut(s) 580, 583, 586, 589, 592, 667, 712, 817, 862
BccI CCATC 4 cut(s) 250, 553, 769, 901
BceAI ACGGC 4 cut(s) 183, 211, 283, 410
BciT130I CCWGG 2 cut(s) 410, 736
BclI TGATCA 1 cut(s) 705
BcnI CCSGG 6 cut(s) 233, 346, 415, 416, 652, 653
BcoDI GTCTC 2 cut(s) 467, 475
BfmI CTRYAG 2 cut(s) 131, 214
BfoI RGCGCY 3 cut(s) 299, 426, 464
BfrI CTTAAG 1 cut(s) 845
BglI GCCNNNNNGGC 1 cut(s) 304
Bme1390I CCNGG 8 cut(s) 233, 346, 410, 415, 416, 652, 653, 736
Bme18I GGWCC 3 cut(s) 45, 567, 732
BmeT110I CYCGRG 2 cut(s) 414, 651
BmgT120I GGNCC 4 cut(s) 45, 412, 567, 732
BmiI GGNNCC 6 cut(s) 47, 297, 424, 462, 568, 666
BmrFI CCNGG 8 cut(s) 233, 346, 410, 415, 416, 652, 653, 736
BpiI GAAGAC 2 cut(s) 317, 895
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 6 cut(s) 233, 346, 415, 416, 652, 653
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 453
BsaHI GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
BsaJI CCNNGG 6 cut(s) 231, 345, 414, 426, 651, 735
BsaWI WCCGGW 1 cut(s) 871
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 470, 500
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 232, 415, 741
Bse118I RCCGGY 1 cut(s) 266
Bse21I CCTNAGG 1 cut(s) 286
Bse3DI GCAATG 2 cut(s) 570, 932
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 2 cut(s) 410, 736
BseDI CCNNGG 6 cut(s) 231, 345, 414, 426, 651, 735
BseGI GGATG 3 cut(s) 388, 513, 708
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 4 cut(s) 55, 232, 415, 741
BseMI GCAATG 2 cut(s) 570, 932
BseMII CTCAG 5 cut(s) 488, 524, 600, 816, 825
BseRI GAGGAG 2 cut(s) 446, 833
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 9 cut(s) 580, 583, 586, 589, 592, 667, 712, 817, 862
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 2 cut(s) 179, 207
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 198, 236, 307, 413, 752
BshNI GGYRCC 3 cut(s) 295, 422, 460
BsiEI CGRYCG 1 cut(s) 237
BsiHKCI CYCGRG 2 cut(s) 414, 651
BsiSI CCGG 9 cut(s) 233, 267, 345, 355, 380, 415, 470, 652, 872
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 4 cut(s) 55, 232, 415, 741
BsmAI GTCTC 2 cut(s) 467, 475
BsmBI CGTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 5 cut(s) 198, 236, 307, 413, 752
BsoBI CYCGRG 2 cut(s) 414, 651
Bsp1286I GDGCHC 2 cut(s) 539, 652
Bsp143I GATC 5 cut(s) 18, 58, 520, 525, 705
BspANI GGCC 5 cut(s) 198, 236, 307, 413, 752
BspCNI CTCAG 5 cut(s) 489, 525, 601, 817, 826
BspFNI CGCG 2 cut(s) 179, 207
BspLI GGNNCC 6 cut(s) 47, 297, 424, 462, 568, 666
BspPI GGATC 1 cut(s) 66
BspT107I GGYRCC 3 cut(s) 295, 422, 460
BspTI CTTAAG 1 cut(s) 845
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 2 cut(s) 570, 932
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 6 cut(s) 231, 345, 414, 426, 651, 735
BssMI GATC 5 cut(s) 18, 58, 520, 525, 705
BssNI GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
Bst2UI CCWGG 2 cut(s) 410, 736
Bst4CI ACNGT 4 cut(s) 149, 190, 316, 486
Bst6I CTCTTC 5 cut(s) 206, 366, 638, 692, 878
BstACI GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
BstAFI CTTAAG 1 cut(s) 845
BstAPI GCANNNNNTGC 1 cut(s) 915
BstBAI YACGTR 1 cut(s) 899
BstC8I GCNNGC 4 cut(s) 268, 421, 577, 750
BstDEI CTNAG 6 cut(s) 286, 497, 533, 609, 825, 834
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 3 cut(s) 388, 513, 708
BstFNI CGCG 2 cut(s) 179, 207
BstH2I RGCGCY 3 cut(s) 299, 426, 464
BstHHI GCGC 4 cut(s) 181, 298, 425, 463
BstKTI GATC 5 cut(s) 21, 61, 523, 528, 708
BstMAI GTCTC 2 cut(s) 467, 475
BstMBI GATC 5 cut(s) 18, 58, 520, 525, 705
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 2 cut(s) 410, 736
BstSCI CCNGG 8 cut(s) 231, 344, 408, 413, 414, 650, 651, 734
BstSFI CTRYAG 2 cut(s) 131, 214
BstUI CGCG 2 cut(s) 179, 207
BstV1I GCAGC 9 cut(s) 580, 583, 586, 589, 592, 667, 712, 817, 862
BstV2I GAAGAC 2 cut(s) 317, 895
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BstZI CGGCCG 1 cut(s) 234
Bsu36I CCTNAGG 1 cut(s) 286
BsuRI GGCC 5 cut(s) 198, 236, 307, 413, 752
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 3 cut(s) 388, 513, 708
BtsI GCAGTG 1 cut(s) 920
BtsIMutI CAGTG 2 cut(s) 530, 920
Cac8I GCNNGC 4 cut(s) 268, 421, 577, 750
CfoI GCGC 4 cut(s) 181, 298, 425, 463
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 4 cut(s) 45, 412, 567, 732
Cfr9I CCCGGG 2 cut(s) 414, 651
CseI GACGC 3 cut(s) 21, 78, 248
CviAII CATG 1 cut(s) 271
DdeI CTNAG 6 cut(s) 286, 497, 533, 609, 825, 834
DinI GGCGCC 3 cut(s) 297, 424, 462
DpnI GATC 5 cut(s) 20, 60, 522, 527, 707
DpnII GATC 5 cut(s) 18, 58, 520, 525, 705
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 5 cut(s) 206, 366, 638, 692, 878
EarI CTCTTC 5 cut(s) 206, 366, 638, 692, 878
EciI GGCGGA 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 752
Eco24I GRGCYC 2 cut(s) 539, 652
Eco47I GGWCC 3 cut(s) 45, 567, 732
Eco52I CGGCCG 1 cut(s) 234
Eco72I CACGTG 1 cut(s) 899
Eco81I CCTNAGG 1 cut(s) 286
Eco88I CYCGRG 2 cut(s) 414, 651
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 408, 734
EcoT38I GRGCYC 2 cut(s) 539, 652
EgeI GGCGCC 3 cut(s) 297, 424, 462
EheI GGCGCC 3 cut(s) 297, 424, 462
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 1 cut(s) 274
FaiI YATR 2 cut(s) 272, 328
FaqI GGGAC 1 cut(s) 31
FatI CATG 1 cut(s) 270
FauI CCCGC 2 cut(s) 56, 184
FbaI TGATCA 1 cut(s) 705
FblI GTMKAC 2 cut(s) 192, 213
FokI GGATG 3 cut(s) 395, 520, 715
FriOI GRGCYC 2 cut(s) 539, 652
GlaI GCGC 4 cut(s) 180, 297, 424, 462
HaeII RGCGCY 3 cut(s) 299, 426, 464
HaeIII GGCC 5 cut(s) 198, 236, 307, 413, 752
HapII CCGG 9 cut(s) 233, 267, 345, 355, 380, 415, 470, 652, 872
HgaI GACGC 3 cut(s) 21, 78, 248
HhaI GCGC 4 cut(s) 181, 298, 425, 463
Hin1I GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 4 cut(s) 179, 296, 423, 461
HinP1I GCGC 4 cut(s) 179, 296, 423, 461
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 6 cut(s) 172, 260, 394, 516, 719, 770
HpaII CCGG 9 cut(s) 233, 267, 345, 355, 380, 415, 470, 652, 872
Hpy166II GTNNAC 3 cut(s) 193, 214, 319
Hpy188I TCNGA 4 cut(s) 58, 255, 525, 584
Hpy188III TCNNGA 3 cut(s) 66, 398, 709
Hpy8I GTNNAC 3 cut(s) 193, 214, 319
HpyAV CCTTC 4 cut(s) 105, 236, 624, 914
HpyCH4III ACNGT 4 cut(s) 149, 190, 316, 486
HpyCH4IV ACGT 3 cut(s) 210, 441, 898
HpyCH4V TGCA 2 cut(s) 683, 925
HpyF3I CTNAG 6 cut(s) 286, 497, 533, 609, 825, 834
HpySE526I ACGT 3 cut(s) 210, 441, 898
Hsp92I GRCGYC 9 cut(s) 5, 32, 70, 210, 240, 296, 423, 441, 461
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 4 cut(s) 179, 296, 423, 461
KasI GGCGCC 3 cut(s) 295, 422, 460
KroI GCCGGC 1 cut(s) 266
KroNI GCCGGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 5 cut(s) 18, 58, 520, 525, 705
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 9 cut(s) 580, 583, 586, 589, 592, 667, 712, 817, 862
MaeII ACGT 3 cut(s) 210, 441, 898
MaeIII GTNAC 1 cut(s) 155
MalI GATC 5 cut(s) 20, 60, 522, 527, 707
MbiI CCGCTC 1 cut(s) 501
MboI GATC 5 cut(s) 18, 58, 520, 525, 705
MboII GAAGA 9 cut(s) 90, 193, 322, 383, 568, 655, 709, 895, 900
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 539, 652
MluCI AATT 3 cut(s) 336, 764, 785
Mly113I GGCGCC 3 cut(s) 296, 423, 461
MlyI GAGTC 4 cut(s) 254, 388, 728, 779
MroNI GCCGGC 1 cut(s) 266
MseI TTAA 2 cut(s) 783, 846
MslI CAYNNNNRTG 1 cut(s) 925
MspA1I CMGCKG 2 cut(s) 670, 725
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 9 cut(s) 233, 267, 345, 355, 380, 415, 470, 652, 872
MspR9I CCNGG 8 cut(s) 233, 346, 410, 415, 416, 652, 653, 736
MvaI CCWGG 2 cut(s) 410, 736
MvnI CGCG 2 cut(s) 179, 207
NaeI GCCGGC 1 cut(s) 268
NarI GGCGCC 3 cut(s) 296, 423, 461
NciI CCSGG 6 cut(s) 233, 346, 415, 416, 652, 653
NdeII GATC 5 cut(s) 18, 58, 520, 525, 705
NgoMIV GCCGGC 1 cut(s) 266
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 6 cut(s) 47, 297, 424, 462, 568, 666
PceI AGGCCT 1 cut(s) 752
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 32, 35
PdiI GCCGGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 172, 516
PleI GAGTC 4 cut(s) 254, 388, 727, 778
PluTI GGCGCC 3 cut(s) 299, 426, 464
PmaCI CACGTG 1 cut(s) 899
PmlI CACGTG 1 cut(s) 899
PpsI GAGTC 4 cut(s) 254, 388, 727, 778
Ppu21I YACGTR 1 cut(s) 899
PpuMI RGGWCCY 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 408, 734
PspCI CACGTG 1 cut(s) 899
PspGI CCWGG 2 cut(s) 408, 734
PspN4I GGNNCC 6 cut(s) 47, 297, 424, 462, 568, 666
PspPI GGNCC 4 cut(s) 45, 412, 567, 732
PspPPI RGGWCCY 1 cut(s) 45
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 725
RseI CAYNNNNRTG 1 cut(s) 925
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 2 cut(s) 783, 846
Sau3AI GATC 5 cut(s) 18, 58, 520, 525, 705
Sau96I GGNCC 4 cut(s) 45, 412, 567, 732
SchI GAGTC 4 cut(s) 254, 388, 728, 779
ScrFI CCNGG 8 cut(s) 233, 346, 410, 415, 416, 652, 653, 736
SduI GDGCHC 2 cut(s) 539, 652
SfcI CTRYAG 2 cut(s) 131, 214
SfoI GGCGCC 3 cut(s) 297, 424, 462
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 3 cut(s) 45, 567, 732
SmaI CCCGGG 2 cut(s) 416, 653
SmiMI CAYNNNNRTG 1 cut(s) 925
SmlI CTYRAG 2 cut(s) 398, 845
SmoI CTYRAG 2 cut(s) 398, 845
SrfI GCCCGGGC 2 cut(s) 416, 653
Sse9I AATT 3 cut(s) 336, 764, 785
SseBI AGGCCT 1 cut(s) 752
SspDI GGCGCC 3 cut(s) 295, 422, 460
SspI AATATT 1 cut(s) 865
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 8 cut(s) 231, 344, 408, 413, 414, 650, 651, 734
TaaI ACNGT 4 cut(s) 149, 190, 316, 486
TaiI ACGT 3 cut(s) 213, 444, 901
TaqI TCGA 6 cut(s) 11, 192, 302, 519, 548, 773
TasI AATT 3 cut(s) 336, 764, 785
TauI GCSGC 9 cut(s) 94, 113, 116, 119, 296, 466, 469, 620, 670
TfiI GAWTC 2 cut(s) 172, 516
Tru1I TTAA 2 cut(s) 783, 846
Tru9I TTAA 2 cut(s) 783, 846
TscAI CASTG 2 cut(s) 537, 927
TseI GCWGC 9 cut(s) 593, 596, 599, 602, 605, 680, 725, 805, 850
TspDTI ATGAA 1 cut(s) 399
TspGWI ACGGA 2 cut(s) 491, 534
TspMI CCCGGG 2 cut(s) 414, 651
TspRI CASTG 2 cut(s) 537, 927
Vha464I CTTAAG 1 cut(s) 845
VpaK11BI GGWCC 3 cut(s) 45, 567, 732
XmaI CCCGGG 2 cut(s) 414, 651
XmiI GTMKAC 2 cut(s) 192, 213
ZraI GACGTC 2 cut(s) 211, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.