Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

21346899 .. 21350611

Gene Structure 3713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTCTCTCTCCACTCTCATCGCCGACGTCGACAAGCACAGCCACTCCATCACCATGGACGACCTCCTCAAGAACATCTACAACGACCAACCCTCGGCCTCTCCGCCGCCGCAGTCCATGGACGGAGTAGCCTCCGCCTCCGCCTCGGCCGCCGCGCCGGGGAGGACGGTGGAGGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGGAGGAGGTGGAGCTGTCGGAGAGGAAGAGGCGGCGGAGGGGAGGCGGATCAGGTGCGGGCGGAGATGACGTTGGAGGATTTTCTGACCAGGGCTGGGGCCGTGAGGGAGGAGGACGTCGGCGTGGGACCCGGGGCGGTGGTTCCGATCGGGTACGGGCAGTTCCAGGTGCAGCAGCCGCCGCCTCCTCAGCCTCAAGGTCAATTGGTGTACGCAAACAGCAACAATGGAACAACGAGTGGAGGTGGGAGAGGAACGAAGAGGAGAGCTGTGCAGGAGGCGCCGCTTGATAAGGCGACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAATCCGCTGCCAGGTCAAGGGAACGCAAGCAGGCTTACACAGTGGAGCTAGAATCTCTGGTGACGCAGCTGGAGGAGGAAAATGCACGCCTCATGAGAGAAGAGGCTGAGCAGAAGAAGGAGAGGTATAAGAAGCTCATGGAGAACCTCATTCCTGTCGTGGAGAAGAGGAGACCTGCACGTGTTCTTCGGAGAGTGCAATCCGTGCACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

250

Amino Acids

28.37

Weight (kDa)

11.36

Isoelectric Point (pI)

83.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	168 - 228	1.9e-13	bZIP transcription factor
bZIP_2	PF07716	169 - 220	4.7e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	31, 324
Acc36I	ACCTGC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	1 cut(s)	156
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	719
AcyI	GRCGYC	3 cut(s)	28, 321, 485
AfaI	GTAC	2 cut(s)	359, 416
AfiI	CCNNNNNNNGG	6 cut(s)	95, 160, 300, 549, 555, 747
AflIII	ACRYGT	1 cut(s)	718
AjnI	CCWGG	3 cut(s)	293, 369, 548
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	219, 473, 586, 607, 673
AluI	AGCT	5 cut(s)	219, 473, 586, 607, 673
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	703
Alw44I	GTGCAC	1 cut(s)	743
AlwI	GGATC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	3 cut(s)	97, 148, 303
ApaLI	GTGCAC	1 cut(s)	743
ApeKI	GCWGC	5 cut(s)	376, 379, 505, 545, 604
AspLEI	GCGC	2 cut(s)	158, 487
AspS9I	GGNCC	2 cut(s)	303, 332
AsuC2I	CCSGG	3 cut(s)	160, 336, 337
AsuHPI	GGTGA	2 cut(s)	44, 610
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	484
BbrPI	CACGTG	1 cut(s)	719
Bbv12I	GWGCWC	1 cut(s)	747
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	5 cut(s)	388, 391, 517, 532, 616
BccI	CCATC	1 cut(s)	57
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	3 cut(s)	295, 371, 550
BclI	TGATCA	1 cut(s)	525
BcnI	CCSGG	3 cut(s)	160, 336, 337
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	1 cut(s)	587
BfoI	RGCGCY	1 cut(s)	488
BfuAI	ACCTGC	1 cut(s)	721
BlpI	GCTNAGC	1 cut(s)	645
Bme1390I	CCNGG	6 cut(s)	160, 295, 336, 337, 371, 550
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	303, 332
BmiI	GGNNCC	5 cut(s)	304, 333, 334, 348, 486
BmrFI	CCNGG	6 cut(s)	160, 295, 336, 337, 371, 550
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	54, 384
BpuMI	CCSGG	3 cut(s)	160, 336, 337
BsaAI	YACGTR	1 cut(s)	719
BsaHI	GRCGYC	3 cut(s)	28, 321, 485
BsaI	GGTCTC	1 cut(s)	703
BsaJI	CCNNGG	8 cut(s)	55, 94, 118, 145, 159, 294, 335, 336
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 260, 290
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 160, 300, 549, 555, 747
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	752
BseBI	CCWGG	3 cut(s)	295, 371, 550
BseDI	CCNNGG	8 cut(s)	55, 94, 118, 145, 159, 294, 335, 336
BseGI	GGATG	1 cut(s)	528
BseLI	CCNNNNNNNGG	6 cut(s)	95, 160, 300, 549, 555, 747
BseMII	CTCAG	2 cut(s)	407, 636
BseNI	ACTGG	1 cut(s)	752
BseSI	GKGCMC	1 cut(s)	747
BseX3I	CGGCCG	1 cut(s)	148
BseXI	GCAGC	5 cut(s)	388, 391, 517, 532, 616
BseYI	CCCAGC	1 cut(s)	299
BsgI	GTGCAG	3 cut(s)	395, 497, 699
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	2 cut(s)	151, 354
BshFI	GGCC	3 cut(s)	99, 150, 305
BshNI	GGYRCC	1 cut(s)	484
BsiEI	CGRYCG	2 cut(s)	151, 354
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	159, 199, 336
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	6 cut(s)	95, 160, 300, 549, 555, 747
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	99, 150, 305
Bso31I	GGTCTC	1 cut(s)	703
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	190, 253, 351, 525
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	2 cut(s)	55, 118
BspANI	GGCC	3 cut(s)	99, 150, 305
BspCNI	CTCAG	2 cut(s)	406, 637
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	5 cut(s)	304, 333, 334, 348, 486
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	484
BspTNI	GGTCTC	1 cut(s)	703
BsrFI	RCCGGY	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	752
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	8 cut(s)	55, 94, 118, 145, 159, 294, 335, 336
BssMI	GATC	4 cut(s)	190, 253, 351, 525
BssNI	GRCGYC	3 cut(s)	28, 321, 485
BssT1I	CCWWGG	2 cut(s)	55, 118
Bst2UI	CCWGG	3 cut(s)	295, 371, 550
Bst4CI	ACNGT	2 cut(s)	170, 580
Bst6I	CTCTTC	4 cut(s)	226, 458, 633, 698
BstACI	GRCGYC	3 cut(s)	28, 321, 485
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	719
BstC8I	GCNNGC	5 cut(s)	200, 264, 566, 570, 625
BstDEI	CTNAG	2 cut(s)	393, 645
BstDSI	CCRYGG	2 cut(s)	55, 118
BstF5I	GGATG	1 cut(s)	528
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	488
BstHHI	GCGC	2 cut(s)	158, 487
BstKTI	GATC	4 cut(s)	193, 256, 354, 528
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	4 cut(s)	190, 253, 351, 525
BstMCI	CGRYCG	2 cut(s)	151, 354
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 382, 385, 394, 484, 511, 742
BstNI	CCWGG	3 cut(s)	295, 371, 550
BstSCI	CCNGG	6 cut(s)	158, 293, 334, 335, 369, 548
BstSLI	GKGCMC	1 cut(s)	747
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	388, 391, 517, 532, 616
BstXI	CCANNNNNNTGG	1 cut(s)	56
BstZI	CGGCCG	1 cut(s)	148
BsuRI	GGCC	3 cut(s)	99, 150, 305
BtgI	CCRYGG	2 cut(s)	55, 118
BtgZI	GCGATG	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	585, 745
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	5 cut(s)	200, 264, 566, 570, 625
CciI	TCATGA	1 cut(s)	630
CfoI	GCGC	2 cut(s)	158, 487
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	303, 332
Cfr9I	CCCGGG	1 cut(s)	335
CseI	GACGC	2 cut(s)	511, 610
Csp6I	GTAC	2 cut(s)	358, 415
CviAII	CATG	4 cut(s)	56, 119, 631, 676
CviQI	GTAC	2 cut(s)	358, 415
DdeI	CTNAG	2 cut(s)	393, 645
DinI	GGCGCC	1 cut(s)	486
DpnI	GATC	4 cut(s)	192, 255, 353, 527
DpnII	GATC	4 cut(s)	190, 253, 351, 525
EaeI	YGGCCR	1 cut(s)	148
EagI	CGGCCG	1 cut(s)	148
Eam1104I	CTCTTC	4 cut(s)	226, 458, 633, 698
EarI	CTCTTC	4 cut(s)	226, 458, 633, 698
EciI	GGCGGA	7 cut(s)	94, 125, 131, 217, 255, 266, 281
EclXI	CGGCCG	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	55, 118
Eco31I	GGTCTC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	293, 369, 548
EcoT14I	CCWWGG	2 cut(s)	55, 118
EgeI	GGCGCC	1 cut(s)	486
EheI	GGCGCC	1 cut(s)	486
ErhI	CCWWGG	2 cut(s)	55, 118
FaeI	CATG	4 cut(s)	59, 122, 634, 679
FaiI	YATR	5 cut(s)	57, 120, 632, 666, 677
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	4 cut(s)	55, 118, 630, 675
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	31
FokI	GGATG	1 cut(s)	535
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	2 cut(s)	157, 486
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	99, 150, 305
HapII	CCGG	3 cut(s)	159, 199, 336
HgaI	GACGC	2 cut(s)	511, 610
HhaI	GCGC	2 cut(s)	158, 487
Hin1I	GRCGYC	3 cut(s)	28, 321, 485
Hin1II	CATG	4 cut(s)	59, 122, 634, 679
Hin6I	GCGC	2 cut(s)	156, 485
HinP1I	GCGC	2 cut(s)	156, 485
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	539, 590
HpaII	CCGG	3 cut(s)	159, 199, 336
HphI	GGTGA	2 cut(s)	44, 610
Hpy166II	GTNNAC	3 cut(s)	32, 415, 745
Hpy188I	TCNGA	4 cut(s)	225, 291, 351, 729
Hpy188III	TCNNGA	4 cut(s)	71, 182, 529, 631
Hpy8I	GTNNAC	3 cut(s)	32, 415, 745
Hpy99I	CGWCG	5 cut(s)	30, 33, 198, 326, 505
HpyAV	CCTTC	2 cut(s)	179, 649
HpyCH4III	ACNGT	2 cut(s)	170, 580
HpyCH4IV	ACGT	4 cut(s)	28, 275, 321, 718
HpyCH4V	TGCA	6 cut(s)	376, 478, 623, 716, 736, 745
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 382, 385, 394, 484, 511, 742
HpyF3I	CTNAG	2 cut(s)	393, 645
HpySE526I	ACGT	4 cut(s)	28, 275, 321, 718
Hsp92I	GRCGYC	3 cut(s)	28, 321, 485
Hsp92II	CATG	4 cut(s)	59, 122, 634, 679
HspAI	GCGC	2 cut(s)	156, 485
KasI	GGCGCC	1 cut(s)	484
KflI	GGGWCCC	1 cut(s)	332
KroI	GCCGGC	1 cut(s)	198
KroNI	GCCGGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	190, 253, 351, 525
LmnI	GCTCC	2 cut(s)	216, 583
Lsp1109I	GCAGC	5 cut(s)	388, 391, 517, 532, 616
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	4 cut(s)	28, 275, 321, 718
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	192, 255, 353, 527
MboI	GATC	4 cut(s)	190, 253, 351, 525
MboII	GAAGA	6 cut(s)	243, 475, 650, 664, 715, 716
MfeI	CAATTG	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	1 cut(s)	407
Mly113I	GGCGCC	1 cut(s)	485
MmeI	TCCRAC	2 cut(s)	203, 258
MreI	CGCCGGCG	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	545, 607
MspI	CCGG	3 cut(s)	159, 199, 336
MspR9I	CCNGG	6 cut(s)	160, 295, 336, 337, 371, 550
MunI	CAATTG	1 cut(s)	407
MvaI	CCWGG	3 cut(s)	295, 371, 550
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	150, 382, 385, 394, 484, 511, 742
NaeI	GCCGGC	1 cut(s)	200
NarI	GGCGCC	1 cut(s)	485
NciI	CCSGG	3 cut(s)	160, 336, 337
NcoI	CCATGG	2 cut(s)	55, 118
NdeII	GATC	4 cut(s)	190, 253, 351, 525
NgoMIV	GCCGGC	1 cut(s)	198
NlaIII	CATG	4 cut(s)	59, 122, 634, 679
NlaIV	GGNNCC	5 cut(s)	304, 333, 334, 348, 486
NmeAIII	GCCGAG	2 cut(s)	75, 126
NmuCI	GTSAC	1 cut(s)	598
PagI	TCATGA	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	539, 590
Ple19I	CGATCG	1 cut(s)	354
PluTI	GGCGCC	1 cut(s)	488
PmaCI	CACGTG	1 cut(s)	719
PmlI	CACGTG	1 cut(s)	719
Ppu21I	YACGTR	1 cut(s)	719
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	293, 369, 548
PspCI	CACGTG	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	3 cut(s)	293, 369, 548
PspN4I	GGNNCC	5 cut(s)	304, 333, 334, 348, 486
PspPI	GGNCC	2 cut(s)	303, 332
PspPPI	RGGWCCY	1 cut(s)	332
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PvuI	CGATCG	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	607
RsaI	GTAC	2 cut(s)	359, 416
RsaNI	GTAC	2 cut(s)	358, 415
RseI	CAYNNNNRTG	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	30
Sau3AI	GATC	4 cut(s)	190, 253, 351, 525
Sau96I	GGNCC	2 cut(s)	303, 332
ScrFI	CCNGG	6 cut(s)	160, 295, 336, 337, 371, 550
SduI	GDGCHC	1 cut(s)	747
SfoI	GGCGCC	1 cut(s)	486
SgrAI	CRCCGGYG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	332
SmaI	CCCGGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	69, 399
SmoI	CTYRAG	2 cut(s)	69, 399
Sse9I	AATT	1 cut(s)	407
SspDI	GGCGCC	1 cut(s)	484
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	6 cut(s)	158, 293, 334, 335, 369, 548
StyI	CCWWGG	2 cut(s)	55, 118
TaaI	ACNGT	2 cut(s)	170, 580
TaiI	ACGT	4 cut(s)	31, 278, 324, 721
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	407
TauI	GCSGC	8 cut(s)	110, 113, 153, 156, 240, 385, 388, 490
TfiI	GAWTC	2 cut(s)	539, 590
TscAI	CASTG	2 cut(s)	585, 752
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	5 cut(s)	376, 379, 505, 545, 604
Tsp45I	GTSAC	1 cut(s)	598
TspGWI	ACGGA	2 cut(s)	139, 730
TspMI	CCCGGG	1 cut(s)	335
TspRI	CASTG	2 cut(s)	585, 752
VneI	GTGCAC	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	332
XmaI	CCCGGG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	31
XspI	CTAG	1 cut(s)	587
ZraI	GACGTC	2 cut(s)	29, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.