Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

37054117 .. 37060133

Gene Structure 6017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGTCGTCGAAGCTGATCTCGTCGTCGTCAAATTCCCGCAACTCCGATCTCTCCCGACGCCCCTCCTCCAATTCCACAAAACCCAAACCACCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCAACCAAACCCTAAACACCACCACCGCCGGCGGCGGCTACATTCATCCCACGCCGGTCCAGCTCGGCTCGATGACCGTCGACGGCCTCTTCTACAACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGCCGCCGCCGAGGCCGAGGACGGTCGATGAGGTCTGGCAGGAGATTGTGTCCGGCGTGAGCCGGAAGGAGTGTAAAGAAGAGGTCCCCGATGAATTGATGACGCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAAGATAACGACATTAAGGATTTACACCTTGTGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGGATGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCAGTCGATTGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGATTCGGAAATGGTGCTGAGGTGGCGGCGAGTGGAGGAGGGAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCGGCGGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAATTGAATTGGAGTCGATGGCGGTTAGATTAGAGGAGGAGAACGAGCGGCTTTTGCAAGAGAAGGCTGAGAGGACCGAGGAAAGACTTAAACAGCTCATGGAAAATATTATTCCTGTTGTGGAGAAGAGAAGACCATCACGTGTCCTCCGCAGAGTTCGCTCACTGCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

315

Amino Acids

34.51

Weight (kDa)

7.81

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	233 - 290	1.4e-10	bZIP transcription factor
bZIP_2	PF07716	233 - 282	1.5e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	507, 519, 820
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	443
AclWI	GGATC	2 cut(s)	588, 601
AcsI	RAATTY	1 cut(s)	34
AcvI	CACGTG	1 cut(s)	914
AcyI	GRCGYC	2 cut(s)	5, 61
AdeI	CACNNNGTG	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	756
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	2 cut(s)	581, 779
AjnI	CCWGG	1 cut(s)	665
AluBI	AGCT	5 cut(s)	16, 187, 244, 309, 868
AluI	AGCT	5 cut(s)	16, 187, 244, 309, 868
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	588, 601
Ama87I	CYCGRG	2 cut(s)	416, 432
AoxI	GGCC	3 cut(s)	208, 323, 435
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	1 cut(s)	34
AspLEI	GCGC	2 cut(s)	253, 443
AspS9I	GGNCC	5 cut(s)	181, 394, 435, 747, 846
AvaI	CYCGRG	2 cut(s)	416, 432
AvaII	GGWCC	4 cut(s)	181, 394, 747, 846
BamHI	GGATCC	1 cut(s)	593
BanII	GRGCYC	2 cut(s)	246, 557
BarI	GAAGNNNNNNTAC	2 cut(s)	752, 784
BbrPI	CACGTG	1 cut(s)	914
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	2 cut(s)	784, 916
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	667
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	667
Bme18I	GGWCC	4 cut(s)	181, 394, 747, 846
BmeT110I	CYCGRG	2 cut(s)	416, 432
BmgT120I	GGNCC	5 cut(s)	181, 394, 435, 747, 846
BmiI	GGNNCC	3 cut(s)	396, 595, 681
BmrFI	CCNGG	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	910
Bpu10I	CCTNAGC	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	914
BsaHI	GRCGYC	2 cut(s)	5, 61
BsaJI	CCNNGG	5 cut(s)	237, 320, 326, 666, 849
BsaXI	ACNNNNNCTCC	4 cut(s)	344, 374, 903, 933
Bsc4I	CCNNNNNNNGG	1 cut(s)	756
Bse118I	RCCGGY	4 cut(s)	152, 178, 275, 437
Bse1I	ACTGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	947
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	5 cut(s)	237, 320, 326, 666, 849
BseGI	GGATG	3 cut(s)	169, 531, 723
BseLI	CCNNNNNNNGG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	947
BseMII	CTCAG	4 cut(s)	506, 542, 612, 831
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	9 cut(s)	58, 88, 91, 94, 97, 654, 727, 821, 824
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	3 cut(s)	210, 325, 437
BsiEI	CGRYCG	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	416, 432
BsiSI	CCGG	7 cut(s)	153, 179, 276, 363, 373, 438, 488
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	756
BsmAI	GTCTC	1 cut(s)	485
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	380
BsnI	GGCC	3 cut(s)	210, 325, 437
BsoBI	CYCGRG	2 cut(s)	416, 432
Bsp1286I	GDGCHC	2 cut(s)	246, 557
Bsp143I	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
BspANI	GGCC	3 cut(s)	210, 325, 437
BspCNI	CTCAG	4 cut(s)	507, 543, 613, 832
BspFNI	CGCG	1 cut(s)	443
BspLI	GGNNCC	3 cut(s)	396, 595, 681
BspPI	GGATC	2 cut(s)	588, 601
BsrBI	CCGCTC	3 cut(s)	507, 519, 820
BsrDI	GCAATG	1 cut(s)	947
BsrFI	RCCGGY	4 cut(s)	152, 178, 275, 437
BsrI	ACTGG	1 cut(s)	562
BssAI	RCCGGY	4 cut(s)	152, 178, 275, 437
BssECI	CCNNGG	5 cut(s)	237, 320, 326, 666, 849
BssMI	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
BssNI	GRCGYC	2 cut(s)	5, 61
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	202, 334, 747
Bst6I	CTCTTC	4 cut(s)	218, 384, 653, 893
BstACI	GRCGYC	2 cut(s)	5, 61
BstBAI	YACGTR	1 cut(s)	914
BstC8I	GCNNGC	6 cut(s)	154, 277, 301, 311, 439, 765
BstDEI	CTNAG	4 cut(s)	515, 551, 621, 840
BstF5I	GGATG	3 cut(s)	169, 531, 723
BstFNI	CGCG	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	253, 443
BstKTI	GATC	7 cut(s)	21, 52, 267, 541, 546, 596, 723
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
BstMCI	CGRYCG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 122, 184, 250, 322, 626, 826, 930
BstNI	CCWGG	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	665
BstUI	CGCG	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	3 cut(s)	210, 325, 437
BtsCI	GGATG	3 cut(s)	169, 531, 723
BtsI	GCAGTG	1 cut(s)	935
BtsIMutI	CAGTG	2 cut(s)	548, 935
Cac8I	GCNNGC	6 cut(s)	154, 277, 301, 311, 439, 765
CfoI	GCGC	2 cut(s)	253, 443
Cfr10I	RCCGGY	4 cut(s)	152, 178, 275, 437
Cfr13I	GGNCC	5 cut(s)	181, 394, 435, 747, 846
CseI	GACGC	3 cut(s)	69, 292, 421
CviAII	CATG	1 cut(s)	871
DdeI	CTNAG	4 cut(s)	515, 551, 621, 840
DpnI	GATC	7 cut(s)	20, 51, 266, 540, 545, 595, 722
DpnII	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
DraIII	CACNNNGTG	1 cut(s)	478
Eam1104I	CTCTTC	4 cut(s)	218, 384, 653, 893
EarI	CTCTTC	4 cut(s)	218, 384, 653, 893
EciI	GGCGGA	2 cut(s)	100, 283
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	246, 557
Eco47I	GGWCC	4 cut(s)	181, 394, 747, 846
Eco53kI	GAGCTC	1 cut(s)	244
Eco72I	CACGTG	1 cut(s)	914
Eco88I	CYCGRG	2 cut(s)	416, 432
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	665
EcoT38I	GRGCYC	2 cut(s)	246, 557
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	1 cut(s)	874
FaiI	YATR	2 cut(s)	599, 872
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	1 cut(s)	870
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	204
FokI	GGATG	3 cut(s)	156, 538, 730
FriOI	GRGCYC	2 cut(s)	246, 557
GlaI	GCGC	2 cut(s)	252, 442
HaeIII	GGCC	3 cut(s)	210, 325, 437
HapII	CCGG	7 cut(s)	153, 179, 276, 363, 373, 438, 488
HgaI	GACGC	3 cut(s)	69, 292, 421
HhaI	GCGC	2 cut(s)	253, 443
Hin1I	GRCGYC	2 cut(s)	5, 61
Hin1II	CATG	1 cut(s)	874
Hin6I	GCGC	2 cut(s)	251, 441
HinP1I	GCGC	2 cut(s)	251, 441
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	4 cut(s)	606, 727, 734, 785
HpaII	CCGG	7 cut(s)	153, 179, 276, 363, 373, 438, 488
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	49, 241, 543, 611
Hpy188III	TCNNGA	4 cut(s)	57, 724, 731, 750
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	7 cut(s)	10, 13, 28, 31, 63, 206, 209
HpyAV	CCTTC	2 cut(s)	370, 829
HpyCH4III	ACNGT	3 cut(s)	202, 334, 747
HpyCH4IV	ACGT	1 cut(s)	913
HpyCH4V	TGCA	3 cut(s)	698, 829, 940
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 122, 184, 250, 322, 626, 826, 930
HpyF3I	CTNAG	4 cut(s)	515, 551, 621, 840
HpySE526I	ACGT	1 cut(s)	913
Hsp92I	GRCGYC	2 cut(s)	5, 61
Hsp92II	CATG	1 cut(s)	874
HspAI	GCGC	2 cut(s)	251, 441
KroI	GCCGGC	3 cut(s)	152, 275, 437
KroNI	GCCGGC	3 cut(s)	154, 277, 439
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
LmnI	GCTCC	2 cut(s)	241, 679
Lsp1109I	GCAGC	1 cut(s)	682
MaeII	ACGT	1 cut(s)	913
MalI	GATC	7 cut(s)	20, 51, 266, 540, 545, 595, 722
MbiI	CCGCTC	3 cut(s)	507, 519, 820
MboI	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
MboII	GAAGA	7 cut(s)	205, 401, 461, 586, 670, 910, 915
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	246, 557
MluCI	AATT	5 cut(s)	34, 73, 404, 774, 779
MlyI	GAGTC	2 cut(s)	743, 794
MmeI	TCCRAC	1 cut(s)	583
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	3 cut(s)	152, 275, 437
MseI	TTAA	2 cut(s)	462, 861
MslI	CAYNNNNRTG	1 cut(s)	940
MspI	CCGG	7 cut(s)	153, 179, 276, 363, 373, 438, 488
MspR9I	CCNGG	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	667
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	8 cut(s)	119, 122, 184, 250, 322, 626, 826, 930
NaeI	GCCGGC	3 cut(s)	154, 277, 439
NdeII	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
NgoMIV	GCCGGC	3 cut(s)	152, 275, 437
NlaIII	CATG	1 cut(s)	874
NlaIV	GGNNCC	3 cut(s)	396, 595, 681
NmeAIII	GCCGAG	3 cut(s)	168, 345, 351
PaeR7I	CTCGAG	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	317
PdiI	GCCGGC	3 cut(s)	154, 277, 439
PfeI	GAWTC	2 cut(s)	606, 727
PleI	GAGTC	2 cut(s)	742, 793
PmaCI	CACGTG	1 cut(s)	914
PmlI	CACGTG	1 cut(s)	914
PpsI	GAGTC	2 cut(s)	742, 793
Ppu21I	YACGTR	1 cut(s)	914
PpuMI	RGGWCCY	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	665
PspCI	CACGTG	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	3 cut(s)	396, 595, 681
PspPI	GGNCC	5 cut(s)	181, 394, 435, 747, 846
PspPPI	RGGWCCY	1 cut(s)	394
PspXI	VCTCGAGB	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	940
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	462, 861
Sau3AI	GATC	7 cut(s)	18, 49, 264, 538, 543, 593, 720
Sau96I	GGNCC	5 cut(s)	181, 394, 435, 747, 846
SchI	GAGTC	2 cut(s)	743, 794
ScrFI	CCNGG	1 cut(s)	667
SduI	GDGCHC	2 cut(s)	246, 557
Sfr274I	CTCGAG	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	152
SgrDI	CGTCGACG	1 cut(s)	203
SinI	GGWCC	4 cut(s)	181, 394, 747, 846
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	940
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	5 cut(s)	34, 73, 404, 774, 779
SspI	AATATT	1 cut(s)	880
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	665
TaaI	ACNGT	3 cut(s)	202, 334, 747
TaiI	ACGT	1 cut(s)	916
TaqII	GACCGA	1 cut(s)	863
TasI	AATT	5 cut(s)	34, 73, 404, 774, 779
TfiI	GAWTC	2 cut(s)	606, 727
Tru1I	TTAA	2 cut(s)	462, 861
Tru9I	TTAA	2 cut(s)	462, 861
TscAI	CASTG	2 cut(s)	555, 942
TseI	GCWGC	1 cut(s)	695
TspDTI	ATGAA	2 cut(s)	158, 417
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	2 cut(s)	555, 942
VpaK11BI	GGWCC	4 cut(s)	181, 394, 747, 846
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XhoI	CTCGAG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.