Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

36528226 .. 36534269

Gene Structure 6044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG204300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGTCGTCGAAGCTGATCTCGTCGTCGTCAAACTCCCGCAACTCCGATCTCTCCCGACGCCCCTCTTCCAATTCCACAAAACCCAAACCACCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCAACCAAACCCTAAACACCGCCACCGCCGGCGGCGGCTACATTAATCCCACGCCGGTCCAGCTCGGCTCGATGGCCGTCGACGGCCTCTTCTACAACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGTCGGCGCCGCCGAGGCCGAGGACGGTCGACGAGGTCTGGCAGGAGATTGTGTCCGGCGTGAGCCGTAAGGAGTGTAAAGAAGAGGTCCCCGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAAGATAACGACATTAAGGATTTACACCTTGTGCCGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGACTGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCAGTCGATCGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGATTCGGAAATGGTGCTGAGGTGGCGGCAAGTGGAGGAGGAAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCGGCAGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCGATGGCGGTTAGATTAGAAGAGGAGAACGAGCGGCTTTTGAAAGAGAAGGTAATGAAAAATGCAGTTGCTCTTCAATTGTGTTATTTTGATATGTTCTCGTCTTGTACTTGTGAAATGTGCTTTCTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

308

Amino Acids

33.23

Weight (kDa)

5.42

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	235 - 280	2.7e-11	bZIP transcription factor
bZIP_2	PF07716	235 - 280	3.1e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccBSI	CCGCTC	3 cut(s)	513, 525, 826
AccI	GTMKAC	2 cut(s)	204, 339
AccII	CGCG	1 cut(s)	446
AclWI	GGATC	2 cut(s)	594, 607
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	3 cut(s)	5, 61, 317
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	901
AfiI	CCNNNNNNNGG	1 cut(s)	762
AgsI	TTSAA	4 cut(s)	587, 785, 835, 869
AjnI	CCWGG	1 cut(s)	671
AluBI	AGCT	4 cut(s)	16, 187, 244, 309
AluI	AGCT	4 cut(s)	16, 187, 244, 309
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	594, 607
Ama87I	CYCGRG	2 cut(s)	419, 435
AoxI	GGCC	4 cut(s)	198, 208, 326, 438
ApeKI	GCWGC	2 cut(s)	701, 746
AseI	ATTAAT	1 cut(s)	168
AspLEI	GCGC	3 cut(s)	253, 319, 446
AspS9I	GGNCC	4 cut(s)	181, 397, 438, 753
AvaI	CYCGRG	2 cut(s)	419, 435
AvaII	GGWCC	3 cut(s)	181, 397, 753
BamHI	GGATCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	246, 563
BarI	GAAGNNNNNNTAC	2 cut(s)	758, 790
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	2 cut(s)	688, 758
BccI	CCATC	2 cut(s)	190, 790
BceAI	ACGGC	3 cut(s)	185, 223, 360
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	3 cut(s)	181, 397, 753
BmeT110I	CYCGRG	2 cut(s)	419, 435
BmgT120I	GGNCC	4 cut(s)	181, 397, 438, 753
BmiI	GGNNCC	4 cut(s)	318, 399, 601, 687
BmrFI	CCNGG	1 cut(s)	673
Bpu10I	CCTNAGC	1 cut(s)	627
BsaHI	GRCGYC	3 cut(s)	5, 61, 317
BsaJI	CCNNGG	4 cut(s)	237, 323, 329, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	762
Bse118I	RCCGGY	4 cut(s)	152, 178, 275, 440
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	4 cut(s)	237, 323, 329, 672
BseGI	GGATG	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	762
BseMII	CTCAG	3 cut(s)	512, 548, 618
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	7 cut(s)	88, 91, 94, 97, 660, 733, 830
BseXI	GCAGC	2 cut(s)	688, 758
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	1 cut(s)	446
Bsh1285I	CGRYCG	2 cut(s)	339, 576
BshFI	GGCC	4 cut(s)	200, 210, 328, 440
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	2 cut(s)	339, 576
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	2 cut(s)	419, 435
BsiSI	CCGG	6 cut(s)	153, 179, 276, 366, 441, 494
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	762
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	4 cut(s)	200, 210, 328, 440
BsoBI	CYCGRG	2 cut(s)	419, 435
Bsp1286I	GDGCHC	2 cut(s)	246, 563
Bsp143I	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
BspANI	GGCC	4 cut(s)	200, 210, 328, 440
BspCNI	CTCAG	3 cut(s)	513, 549, 619
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	4 cut(s)	318, 399, 601, 687
BspPI	GGATC	2 cut(s)	594, 607
BspQI	GCTCTTC	1 cut(s)	870
BspT107I	GGYRCC	1 cut(s)	316
BsrBI	CCGCTC	3 cut(s)	513, 525, 826
BsrFI	RCCGGY	4 cut(s)	152, 178, 275, 440
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	4 cut(s)	152, 178, 275, 440
BssECI	CCNNGG	4 cut(s)	237, 323, 329, 672
BssMI	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
BssNI	GRCGYC	3 cut(s)	5, 61, 317
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	3 cut(s)	337, 534, 753
Bst6I	CTCTTC	6 cut(s)	73, 218, 387, 659, 807, 870
BstACI	GRCGYC	3 cut(s)	5, 61, 317
BstC8I	GCNNGC	5 cut(s)	154, 277, 301, 442, 771
BstDEI	CTNAG	3 cut(s)	521, 557, 627
BstF5I	GGATG	1 cut(s)	729
BstFNI	CGCG	1 cut(s)	446
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	3 cut(s)	253, 319, 446
BstKTI	GATC	8 cut(s)	21, 52, 267, 547, 552, 576, 602, 729
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
BstMCI	CGRYCG	2 cut(s)	339, 576
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 122, 184, 250, 325, 490, 632
BstNI	CCWGG	1 cut(s)	673
BstSCI	CCNGG	1 cut(s)	671
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	688, 758
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	200, 210, 328, 440
BtsCI	GGATG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	5 cut(s)	154, 277, 301, 442, 771
CfoI	GCGC	3 cut(s)	253, 319, 446
Cfr10I	RCCGGY	4 cut(s)	152, 178, 275, 440
Cfr13I	GGNCC	4 cut(s)	181, 397, 438, 753
CseI	GACGC	2 cut(s)	69, 292
Csp6I	GTAC	1 cut(s)	900
CviQI	GTAC	1 cut(s)	900
DdeI	CTNAG	3 cut(s)	521, 557, 627
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	8 cut(s)	20, 51, 266, 546, 551, 575, 601, 728
DpnII	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
DraIII	CACNNNGTG	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	6 cut(s)	73, 218, 387, 659, 807, 870
EarI	CTCTTC	6 cut(s)	73, 218, 387, 659, 807, 870
EciI	GGCGGA	2 cut(s)	100, 283
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	246, 563
Eco47I	GGWCC	3 cut(s)	181, 397, 753
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	419, 435
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	671
EcoT38I	GRGCYC	2 cut(s)	246, 563
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
Esp3I	CGTCTC	1 cut(s)	491
FaiI	YATR	2 cut(s)	605, 887
FaqI	GGGAC	1 cut(s)	383
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	2 cut(s)	204, 339
FokI	GGATG	1 cut(s)	736
FriOI	GRGCYC	2 cut(s)	246, 563
GlaI	GCGC	3 cut(s)	252, 318, 445
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	4 cut(s)	200, 210, 328, 440
HapII	CCGG	6 cut(s)	153, 179, 276, 366, 441, 494
HgaI	GACGC	2 cut(s)	69, 292
HhaI	GCGC	3 cut(s)	253, 319, 446
Hin1I	GRCGYC	3 cut(s)	5, 61, 317
Hin6I	GCGC	3 cut(s)	251, 317, 444
HinP1I	GCGC	3 cut(s)	251, 317, 444
HincII	GTYRAC	2 cut(s)	205, 340
HindII	GTYRAC	2 cut(s)	205, 340
HinfI	GANTC	5 cut(s)	415, 612, 733, 740, 791
HpaII	CCGG	6 cut(s)	153, 179, 276, 366, 441, 494
Hpy166II	GTNNAC	2 cut(s)	205, 340
Hpy188I	TCNGA	4 cut(s)	49, 241, 549, 617
Hpy188III	TCNNGA	6 cut(s)	57, 419, 577, 730, 737, 756
Hpy8I	GTNNAC	2 cut(s)	205, 340
Hpy99I	CGWCG	9 cut(s)	10, 13, 28, 31, 63, 206, 209, 316, 344
HpyAV	CCTTC	2 cut(s)	645, 835
HpyCH4III	ACNGT	3 cut(s)	337, 534, 753
HpyCH4V	TGCA	2 cut(s)	704, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 122, 184, 250, 325, 490, 632
HpyF3I	CTNAG	3 cut(s)	521, 557, 627
Hsp92I	GRCGYC	3 cut(s)	5, 61, 317
HspAI	GCGC	3 cut(s)	251, 317, 444
KasI	GGCGCC	1 cut(s)	316
KroI	GCCGGC	3 cut(s)	152, 275, 440
KroNI	GCCGGC	3 cut(s)	154, 277, 442
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	2 cut(s)	241, 685
Lsp1109I	GCAGC	2 cut(s)	688, 758
MalI	GATC	8 cut(s)	20, 51, 266, 546, 551, 575, 601, 728
MbiI	CCGCTC	3 cut(s)	513, 525, 826
MboI	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
MboII	GAAGA	8 cut(s)	60, 205, 404, 464, 592, 676, 824, 857
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	2 cut(s)	246, 563
MluCI	AATT	3 cut(s)	73, 785, 869
Mly113I	GGCGCC	1 cut(s)	317
MlyI	GAGTC	3 cut(s)	409, 749, 800
MmeI	TCCRAC	1 cut(s)	589
MreI	CGCCGGCG	1 cut(s)	152
MroNI	GCCGGC	3 cut(s)	152, 275, 440
MseI	TTAA	2 cut(s)	168, 465
MspI	CCGG	6 cut(s)	153, 179, 276, 366, 441, 494
MspR9I	CCNGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	673
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	7 cut(s)	119, 122, 184, 250, 325, 490, 632
NaeI	GCCGGC	3 cut(s)	154, 277, 442
NarI	GGCGCC	1 cut(s)	317
NdeII	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
NgoMIV	GCCGGC	3 cut(s)	152, 275, 440
NlaIV	GGNNCC	4 cut(s)	318, 399, 601, 687
NmeAIII	GCCGAG	3 cut(s)	168, 348, 354
PaeR7I	CTCGAG	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	870
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PdiI	GCCGGC	3 cut(s)	154, 277, 442
PfeI	GAWTC	2 cut(s)	612, 733
PflFI	GACNNNGTC	1 cut(s)	344
Ple19I	CGATCG	1 cut(s)	576
PleI	GAGTC	3 cut(s)	409, 748, 799
PluTI	GGCGCC	1 cut(s)	320
PpsI	GAGTC	3 cut(s)	409, 748, 799
PpuMI	RGGWCCY	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	4 cut(s)	318, 399, 601, 687
PspPI	GGNCC	4 cut(s)	181, 397, 438, 753
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	599
PsyI	GACNNNGTC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	576
RsaI	GTAC	1 cut(s)	901
RsaNI	GTAC	1 cut(s)	900
SacI	GAGCTC	1 cut(s)	246
SalI	GTCGAC	2 cut(s)	203, 338
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	168, 465
Sau3AI	GATC	8 cut(s)	18, 49, 264, 544, 549, 573, 599, 726
Sau96I	GGNCC	4 cut(s)	181, 397, 438, 753
SchI	GAGTC	3 cut(s)	409, 749, 800
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	246, 563
SfoI	GGCGCC	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	419
SgrAI	CRCCGGYG	1 cut(s)	152
SgrDI	CGTCGACG	1 cut(s)	203
SinI	GGWCC	3 cut(s)	181, 397, 753
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	3 cut(s)	73, 785, 869
SspDI	GGCGCC	1 cut(s)	316
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	3 cut(s)	337, 534, 753
TasI	AATT	3 cut(s)	73, 785, 869
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	2 cut(s)	612, 733
Tru1I	TTAA	2 cut(s)	168, 465
Tru9I	TTAA	2 cut(s)	168, 465
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	2 cut(s)	701, 746
TspDTI	ATGAA	1 cut(s)	863
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	561
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	181, 397, 753
VspI	ATTAAT	1 cut(s)	168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XhoI	CTCGAG	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	204, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.