Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

2866653 .. 2866991

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGATCCGTGCGTTGGAGGTTTTGCATTTGGGGTGGGGACATTGGTACACTCTCAGAGAGCTTGAGGATTCCACTAATGGGTTTGCTGAGAGTCGGAATGAGTGTAAAGATGAGCTTCTGCTTGCGACATTGTCTCCGGAGATGAAGAGATTGTGCAGCAGACTGTTTTCCTTCAATCAGATCCCGGTCAGCCCGTTCGAGTTGATTGATATGGTCGAAGGGTTGGTAGCTGGGTTTGGAAATTATGCGAAGAAGAGGGTGACGGCCAAGAGGGCAATTTTAAATTTTTTAGGTTTAGGCTCGGTTTTTAGTTTTTTAAATTTAAAATTTTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

12.79

Weight (kDa)

7.8

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	136
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	3 cut(s)	283, 319, 326
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	13, 78
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	3 cut(s)	61, 115, 230
AluI	AGCT	3 cut(s)	61, 115, 230
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	175
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	3 cut(s)	283, 319, 326
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	168
BceAI	ACGGC	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	138
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 78
BseAI	TCCGGA	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	13, 78
BseMII	CTCAG	2 cut(s)	67, 78
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	137, 185
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	13, 78
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	3, 180
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	2 cut(s)	66, 79
BspEI	TCCGGA	1 cut(s)	136
BspPI	GGATC	1 cut(s)	175
BssMI	GATC	2 cut(s)	3, 180
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	2 cut(s)	140, 248
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	53, 87
BstKTI	GATC	2 cut(s)	6, 183
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	3, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	6 cut(s)	61, 115, 192, 230, 266, 300
CviKI_1	RGCY	6 cut(s)	61, 115, 192, 230, 266, 300
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	53, 87
DpnI	GATC	2 cut(s)	5, 182
DpnII	GATC	2 cut(s)	3, 180
DraI	TTTAAA	3 cut(s)	282, 318, 324
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	140, 248
EarI	CTCTTC	2 cut(s)	140, 248
FaiI	YATR	2 cut(s)	212, 246
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	157
GsaI	CCCAGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	2 cut(s)	137, 185
HinfI	GANTC	2 cut(s)	68, 91
HpaII	CCGG	2 cut(s)	137, 185
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	56, 96, 180
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	181, 212
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	25, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	2 cut(s)	53, 87
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	3, 180
LpnPI	CCDG	3 cut(s)	150, 198, 216
Lsp1109I	GCAGC	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	5, 182
MboI	GATC	2 cut(s)	3, 180
MboII	GAAGA	3 cut(s)	157, 262, 265
MflI	RGATCY	1 cut(s)	180
MluCI	AATT	5 cut(s)	241, 276, 283, 319, 326
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	4 cut(s)	10, 58, 249, 264
MroI	TCCGGA	1 cut(s)	136
MseI	TTAA	3 cut(s)	281, 317, 323
MspI	CCGG	2 cut(s)	137, 185
MspR9I	CCNGG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	272
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	3, 180
NmuCI	GTSAC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	68
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	281, 317, 323
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	2 cut(s)	3, 180
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	5 cut(s)	21, 63, 117, 232, 295
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	5 cut(s)	241, 276, 283, 319, 326
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	198, 216
TasI	AATT	5 cut(s)	241, 276, 283, 319, 326
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	281, 317, 323
Tru9I	TTAA	3 cut(s)	281, 317, 323
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	158
Tth111I	GACNNNGTC	1 cut(s)	130
XapI	RAATTY	3 cut(s)	283, 319, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.