RchiOBHm_Chr7g0224461
BZIP Family

G-box-binding factor 4-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
46611331 .. 46615034
3704 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20099

Sequence Viewer

Length: 819 bp
ATGGCGTCGTCGAAGTTAGTCTCAGTCTCGACGGCCAATTCGGATCTGCCACGCGACTCCTCTATATGTTCTCTCTCCACTCTCATCGCCGACGTCGACAAGCACAACCACTCCATCACCATGGACGACCTCCTCAAGAACATCTACAACGACCAACCCTCGGCCTCTCCGCCGCCGCCTCCGTCCATGGACGGAGGAGCCTCCGCCTCGGCCGTCGCGCCGGGGAGGACGGTGGAGGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGGAGGAGGAGGAGCTGACGGAGAGGACGAGGCCGCGGAGGGGGAGGCGGATCAGGTGCGGGCGGAGATGACGTTGGAGGATTTTCTGACCAGGGCTGGGGCCGTGAGAGAGGAGGACGTCGGCGTGGGACCCGGGGCTGTGGTTCCGATCGGGTACGGGCAGTTCCAGGTGCAGCAGCCGCCGCCGCCTCAGCCTCAAGGTCAATTGGTGTACGCAAACAACAACAATGGAACAACGAGTGGAGGTGGTGGGAGAGGAACGAAGAGGAGAGCTGTGCAGGAGGCGCCGCTTGATAAGGCGACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAATCCGCTGCCAGGTCAAGGGAACGCAAGCAGGCTTACACAGTGGAGCTAGAATCTCTGGTGACGCAGCTGGAGGAGGAAAATGCACGCCTCGTGAGAGAAGAGGCTGAGCAGAAGAAGGAGAGGTATAAGAAGCTCATGGAGAACCTCATTCCTGTCGTGGAGAAGAGGAGACCTGCACGTGTTCTTCGGAGAGTGCAATCCATGCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

272

Amino Acids

29.54

Weight (kDa)

5.81

Isoelectric Point (pI)

57.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 190 - 250 2.1e-13 bZIP transcription factor
bZIP_2 PF07716 191 - 241 4.7e-10 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 96, 387
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 1 cut(s) 550
AccB7I CCANNNNNTGG 1 cut(s) 813
AccI GTMKAC 1 cut(s) 96
AccII CGCG 3 cut(s) 54, 218, 302
AclWI GGATC 2 cut(s) 51, 324
AcoI YGGCCR 2 cut(s) 33, 210
AcvI CACGTG 1 cut(s) 785
AcyI GRCGYC 4 cut(s) 5, 93, 384, 551
AfaI GTAC 2 cut(s) 422, 479
AfiI CCNNNNNNNGG 6 cut(s) 160, 306, 363, 615, 621, 813
AflIII ACRYGT 1 cut(s) 784
AjnI CCWGG 3 cut(s) 356, 432, 614
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 5 cut(s) 281, 539, 652, 673, 739
AluI AGCT 5 cut(s) 281, 539, 652, 673, 739
Alw26I GTCTC 3 cut(s) 25, 31, 769
AlwI GGATC 2 cut(s) 51, 324
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 5 cut(s) 33, 162, 210, 297, 366
ApeKI GCWGC 5 cut(s) 439, 442, 571, 611, 670
ArsI GACNNNNNNTTYG 2 cut(s) 22, 54
AspLEI GCGC 2 cut(s) 220, 553
AspS9I GGNCC 2 cut(s) 366, 395
AsuC2I CCSGG 3 cut(s) 222, 399, 400
AsuHPI GGTGA 2 cut(s) 109, 676
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 550
BauI CACGAG 1 cut(s) 695
BbrPI CACGTG 1 cut(s) 785
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 451, 454, 583, 598, 682
BccI CCATC 1 cut(s) 122
BceAI ACGGC 3 cut(s) 48, 197, 353
BciT130I CCWGG 3 cut(s) 358, 434, 616
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 3 cut(s) 222, 399, 400
BcoDI GTCTC 3 cut(s) 25, 31, 769
BfaI CTAG 1 cut(s) 653
BfoI RGCGCY 1 cut(s) 554
BfuAI ACCTGC 1 cut(s) 787
BlpI GCTNAGC 1 cut(s) 711
Bme1390I CCNGG 6 cut(s) 222, 358, 399, 400, 434, 616
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 366, 395
BmiI GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 552
BmrFI CCNGG 6 cut(s) 222, 358, 399, 400, 434, 616
BpmI CTGGAG 1 cut(s) 695
Bpu10I CCTNAGC 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 2 cut(s) 119, 447
BpuMI CCSGG 3 cut(s) 222, 399, 400
BsaAI YACGTR 1 cut(s) 785
BsaHI GRCGYC 4 cut(s) 5, 93, 384, 551
BsaI GGTCTC 1 cut(s) 769
BsaJI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 323, 353
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 306, 363, 615, 621, 813
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 818
BseBI CCWGG 3 cut(s) 358, 434, 616
BseDI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 6 cut(s) 160, 306, 363, 615, 621, 813
BseMII CTCAG 3 cut(s) 36, 470, 702
BseNI ACTGG 1 cut(s) 818
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 5 cut(s) 451, 454, 583, 598, 682
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 3 cut(s) 458, 563, 765
Bsh1236I CGCG 3 cut(s) 54, 218, 302
Bsh1285I CGRYCG 2 cut(s) 213, 417
BshFI GGCC 5 cut(s) 35, 164, 212, 299, 368
BshNI GGYRCC 1 cut(s) 550
BsiEI CGRYCG 2 cut(s) 213, 417
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 3 cut(s) 221, 261, 399
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 6 cut(s) 160, 306, 363, 615, 621, 813
BsmAI GTCTC 3 cut(s) 25, 31, 769
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 5 cut(s) 35, 164, 212, 299, 368
Bso31I GGTCTC 1 cut(s) 769
BsoBI CYCGRG 1 cut(s) 398
Bsp143I GATC 5 cut(s) 43, 252, 316, 414, 591
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 2 cut(s) 120, 186
BspANI GGCC 5 cut(s) 35, 164, 212, 299, 368
BspCNI CTCAG 3 cut(s) 35, 469, 703
BspFNI CGCG 3 cut(s) 54, 218, 302
BspLI GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 552
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 2 cut(s) 51, 324
BspT107I GGYRCC 1 cut(s) 550
BspTNI GGTCTC 1 cut(s) 769
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 818
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BssMI GATC 5 cut(s) 43, 252, 316, 414, 591
BssNI GRCGYC 4 cut(s) 5, 93, 384, 551
BssSI CACGAG 1 cut(s) 695
BssT1I CCWWGG 2 cut(s) 120, 186
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 3 cut(s) 358, 434, 616
Bst4CI ACNGT 2 cut(s) 232, 646
Bst6I CTCTTC 3 cut(s) 524, 699, 764
BstACI GRCGYC 4 cut(s) 5, 93, 384, 551
BstAPI GCANNNNNTGC 1 cut(s) 808
BstBAI YACGTR 1 cut(s) 785
BstC8I GCNNGC 5 cut(s) 262, 327, 632, 636, 691
BstDEI CTNAG 3 cut(s) 22, 456, 711
BstDSI CCRYGG 3 cut(s) 120, 186, 300
BstF5I GGATG 1 cut(s) 594
BstFNI CGCG 3 cut(s) 54, 218, 302
BstH2I RGCGCY 1 cut(s) 554
BstHHI GCGC 2 cut(s) 220, 553
BstKTI GATC 5 cut(s) 46, 255, 319, 417, 594
BstMAI GTCTC 3 cut(s) 25, 31, 769
BstMBI GATC 5 cut(s) 43, 252, 316, 414, 591
BstMCI CGRYCG 2 cut(s) 213, 417
BstMWI GCNNNNNNNGC 7 cut(s) 445, 448, 451, 457, 550, 577, 808
BstNI CCWGG 3 cut(s) 358, 434, 616
BstSCI CCNGG 6 cut(s) 220, 356, 397, 398, 432, 614
BstUI CGCG 3 cut(s) 54, 218, 302
BstV1I GCAGC 5 cut(s) 451, 454, 583, 598, 682
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 5 cut(s) 35, 164, 212, 299, 368
BtgI CCRYGG 3 cut(s) 120, 186, 300
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 651, 811
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 5 cut(s) 262, 327, 632, 636, 691
CfoI GCGC 2 cut(s) 220, 553
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 366, 395
Cfr42I CCGCGG 1 cut(s) 303
Cfr9I CCCGGG 1 cut(s) 398
CseI GACGC 2 cut(s) 577, 676
Csp6I GTAC 2 cut(s) 421, 478
CviAII CATG 4 cut(s) 121, 187, 742, 808
CviQI GTAC 2 cut(s) 421, 478
DdeI CTNAG 3 cut(s) 22, 456, 711
DinI GGCGCC 1 cut(s) 552
DpnI GATC 5 cut(s) 45, 254, 318, 416, 593
DpnII GATC 5 cut(s) 43, 252, 316, 414, 591
EaeI YGGCCR 2 cut(s) 33, 210
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 524, 699, 764
EarI CTCTTC 3 cut(s) 524, 699, 764
EciI GGCGGA 5 cut(s) 159, 193, 279, 329, 344
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 120, 186
Eco31I GGTCTC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 395
Eco52I CGGCCG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 785
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 356, 432, 614
EcoT14I CCWWGG 2 cut(s) 120, 186
EgeI GGCGCC 1 cut(s) 552
EheI GGCGCC 1 cut(s) 552
ErhI CCWWGG 2 cut(s) 120, 186
FaeI CATG 4 cut(s) 124, 190, 745, 811
FaiI YATR 7 cut(s) 65, 67, 122, 188, 732, 743, 809
FaqI GGGAC 1 cut(s) 408
FatI CATG 4 cut(s) 120, 186, 741, 807
FauI CCCGC 1 cut(s) 318
FbaI TGATCA 1 cut(s) 591
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 601
FspBI CTAG 1 cut(s) 653
GlaI GCGC 2 cut(s) 219, 552
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 1 cut(s) 554
HaeIII GGCC 5 cut(s) 35, 164, 212, 299, 368
HapII CCGG 3 cut(s) 221, 261, 399
HgaI GACGC 2 cut(s) 577, 676
HhaI GCGC 2 cut(s) 220, 553
Hin1I GRCGYC 4 cut(s) 5, 93, 384, 551
Hin1II CATG 4 cut(s) 124, 190, 745, 811
Hin6I GCGC 2 cut(s) 218, 551
HinP1I GCGC 2 cut(s) 218, 551
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 56, 605, 656
HpaII CCGG 3 cut(s) 221, 261, 399
HphI GGTGA 2 cut(s) 109, 676
Hpy166II GTNNAC 2 cut(s) 97, 478
Hpy188I TCNGA 4 cut(s) 43, 354, 414, 795
Hpy188III TCNNGA 5 cut(s) 28, 136, 244, 595, 697
Hpy8I GTNNAC 2 cut(s) 97, 478
Hpy99I CGWCG 9 cut(s) 10, 13, 34, 95, 98, 218, 260, 389, 571
HpyAV CCTTC 2 cut(s) 241, 715
HpyCH4III ACNGT 2 cut(s) 232, 646
HpyCH4IV ACGT 4 cut(s) 93, 338, 384, 784
HpyCH4V TGCA 6 cut(s) 439, 544, 689, 782, 802, 811
HpyF10VI GCNNNNNNNGC 7 cut(s) 445, 448, 451, 457, 550, 577, 808
HpyF3I CTNAG 3 cut(s) 22, 456, 711
HpySE526I ACGT 4 cut(s) 93, 338, 384, 784
Hsp92I GRCGYC 4 cut(s) 5, 93, 384, 551
Hsp92II CATG 4 cut(s) 124, 190, 745, 811
HspAI GCGC 2 cut(s) 218, 551
KasI GGCGCC 1 cut(s) 550
KflI GGGWCCC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 591
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 5 cut(s) 43, 252, 316, 414, 591
LmnI GCTCC 3 cut(s) 197, 278, 649
Lsp1109I GCAGC 5 cut(s) 451, 454, 583, 598, 682
MaeI CTAG 1 cut(s) 653
MaeII ACGT 4 cut(s) 93, 338, 384, 784
MaeIII GTNAC 1 cut(s) 664
MalI GATC 5 cut(s) 45, 254, 318, 416, 593
MboI GATC 5 cut(s) 43, 252, 316, 414, 591
MboII GAAGA 5 cut(s) 541, 716, 730, 781, 782
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 1 cut(s) 43
MluCI AATT 2 cut(s) 37, 470
Mly113I GGCGCC 1 cut(s) 551
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 321
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 3 cut(s) 302, 611, 673
MspI CCGG 3 cut(s) 221, 261, 399
MspR9I CCNGG 6 cut(s) 222, 358, 399, 400, 434, 616
MunI CAATTG 1 cut(s) 470
MvaI CCWGG 3 cut(s) 358, 434, 616
MvnI CGCG 3 cut(s) 54, 218, 302
MwoI GCNNNNNNNGC 7 cut(s) 445, 448, 451, 457, 550, 577, 808
NaeI GCCGGC 1 cut(s) 262
NarI GGCGCC 1 cut(s) 551
NciI CCSGG 3 cut(s) 222, 399, 400
NcoI CCATGG 2 cut(s) 120, 186
NdeII GATC 5 cut(s) 43, 252, 316, 414, 591
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 124, 190, 745, 811
NlaIV GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 552
NmeAIII GCCGAG 2 cut(s) 140, 188
NmuCI GTSAC 1 cut(s) 664
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 291
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 605, 656
PflMI CCANNNNNTGG 1 cut(s) 813
Ple19I CGATCG 1 cut(s) 417
PleI GAGTC 1 cut(s) 50
PluTI GGCGCC 1 cut(s) 554
PmaCI CACGTG 1 cut(s) 785
PmlI CACGTG 1 cut(s) 785
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 785
PpuMI RGGWCCY 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 356, 432, 614
PspCI CACGTG 1 cut(s) 785
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 356, 432, 614
PspN4I GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 552
PspPI GGNCC 2 cut(s) 366, 395
PspPPI RGGWCCY 1 cut(s) 395
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 417
PvuII CAGCTG 1 cut(s) 673
RsaI GTAC 2 cut(s) 422, 479
RsaNI GTAC 2 cut(s) 421, 478
RseI CAYNNNNRTG 1 cut(s) 119
SacII CCGCGG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 95
Sau3AI GATC 5 cut(s) 43, 252, 316, 414, 591
Sau96I GGNCC 2 cut(s) 366, 395
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 6 cut(s) 222, 358, 399, 400, 434, 616
SfoI GGCGCC 1 cut(s) 552
Sfr303I CCGCGG 1 cut(s) 303
SgrAI CRCCGGYG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 1 cut(s) 395
SmaI CCCGGG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 134, 462
SmoI CTYRAG 2 cut(s) 134, 462
Sse9I AATT 2 cut(s) 37, 470
SspDI GGCGCC 1 cut(s) 550
SspMI CTAG 1 cut(s) 653
StyD4I CCNGG 6 cut(s) 220, 356, 397, 398, 432, 614
StyI CCWWGG 2 cut(s) 120, 186
TaaI ACNGT 2 cut(s) 232, 646
TaiI ACGT 4 cut(s) 96, 341, 387, 787
TaqI TCGA 3 cut(s) 11, 29, 96
TasI AATT 2 cut(s) 37, 470
TauI GCSGC 7 cut(s) 175, 178, 302, 448, 451, 454, 556
TfiI GAWTC 2 cut(s) 605, 656
TscAI CASTG 2 cut(s) 651, 818
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 5 cut(s) 439, 442, 571, 611, 670
Tsp45I GTSAC 1 cut(s) 664
TspGWI ACGGA 3 cut(s) 171, 207, 300
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 2 cut(s) 651, 818
Van91I CCANNNNNTGG 1 cut(s) 813
VpaK11BI GGWCC 1 cut(s) 395
XmaI CCCGGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 653
ZraI GACGTC 2 cut(s) 94, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.