Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

34928395 .. 34934376

Gene Structure 5982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCGTCGACGGCCTCTTCTACAACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGTCTGCGCCGCCGCCGCCGCCGAGGCCGAAGACGGTCGACGAGGTCTGGCAGGAGATTGTGTCCGGCGAGAGCCGGAAGGAGTGTAAAGAAGAGGGCCCCGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAGGATAACGACATTAAGGATTTACACCATGTGCCGCCGGAGACGGAGAGGTTGAGCGGAGGGATGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCCGTCGATTGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGATTCGGAAATGGTGCTGAGGTGGCGGCGAGTGGTGGAGCAAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCGCAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCGGCGGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCGATGGCGGTTAGATTAGAGGAGGAGAACGAGCGGCTTTTGAAAGAAAAGGCTGAGAGGACCGAGGAAAGACTTAAGCAGCTCATGGAAAATATTATTCCGGTTGTGGAGAAGAGAAGACCATCACGTGTCCTCCGCAGAGTTCGCTCACTGCAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

249

Amino Acids

27.89

Weight (kDa)

5.57

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	167 - 224	1.8e-11	bZIP transcription factor
bZIP_2	PF07716	167 - 215	3.5e-08	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	501
AccBSI	CCGCTC	2 cut(s)	321, 622
AccI	GTMKAC	2 cut(s)	9, 153
AccII	CGCG	1 cut(s)	260
AclWI	GGATC	2 cut(s)	390, 403
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	295
AfiI	CCNNNNNNNGG	1 cut(s)	558
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	715
AgsI	TTSAA	3 cut(s)	383, 581, 631
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	3 cut(s)	49, 114, 670
AluI	AGCT	3 cut(s)	49, 114, 670
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	390, 403
Ama87I	CYCGRG	2 cut(s)	233, 249
AoxI	GGCC	5 cut(s)	3, 13, 140, 211, 252
ApaI	GGGCCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	497, 502, 667
AspLEI	GCGC	4 cut(s)	58, 124, 260, 502
AspS9I	GGNCC	5 cut(s)	211, 212, 252, 549, 648
AvaI	CYCGRG	2 cut(s)	233, 249
AvaII	GGWCC	2 cut(s)	549, 648
BaeGI	GKGCMC	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	395
BanII	GRGCYC	3 cut(s)	51, 215, 359
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BbrPI	CACGTG	1 cut(s)	716
BbsI	GAAGAC	2 cut(s)	152, 712
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	3 cut(s)	484, 514, 679
BccI	CCATC	2 cut(s)	586, 718
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	469
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	662
BglI	GCCNNNNNGGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	2 cut(s)	549, 648
BmeT110I	CYCGRG	2 cut(s)	233, 249
BmgT120I	GGNCC	5 cut(s)	211, 212, 252, 549, 648
BmiI	GGNNCC	4 cut(s)	213, 214, 397, 483
BmrFI	CCNGG	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	152, 712
Bpu10I	CCTNAGC	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	716
BsaJI	CCNNGG	4 cut(s)	42, 137, 468, 651
BsaWI	WCCGGW	1 cut(s)	688
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 705, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse118I	RCCGGY	2 cut(s)	80, 254
Bse3DI	GCAATG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	4 cut(s)	42, 137, 468, 651
BseGI	GGATG	2 cut(s)	333, 525
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	749
BseMII	CTCAG	3 cut(s)	344, 414, 633
BseRI	GAGGAG	3 cut(s)	529, 623, 626
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	484, 514, 679
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	5 cut(s)	5, 15, 142, 213, 254
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	233, 249
BsiSI	CCGG	6 cut(s)	81, 180, 190, 255, 302, 689
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	5 cut(s)	5, 15, 142, 213, 254
BsoBI	CYCGRG	2 cut(s)	233, 249
Bsp120I	GGGCCC	1 cut(s)	211
Bsp1286I	GDGCHC	3 cut(s)	51, 215, 359
Bsp143I	GATC	5 cut(s)	69, 340, 345, 395, 522
BspANI	GGCC	5 cut(s)	5, 15, 142, 213, 254
BspCNI	CTCAG	3 cut(s)	345, 415, 634
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	4 cut(s)	213, 214, 397, 483
BspPI	GGATC	2 cut(s)	390, 403
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	2 cut(s)	321, 622
BsrDI	GCAATG	1 cut(s)	749
BsrFI	RCCGGY	2 cut(s)	80, 254
BssAI	RCCGGY	2 cut(s)	80, 254
BssECI	CCNNGG	4 cut(s)	42, 137, 468, 651
BssMI	GATC	5 cut(s)	69, 340, 345, 395, 522
Bst2UI	CCWGG	1 cut(s)	469
Bst4CI	ACNGT	2 cut(s)	151, 549
Bst6I	CTCTTC	4 cut(s)	23, 201, 455, 695
BstAFI	CTTAAG	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	716
BstC8I	GCNNGC	4 cut(s)	82, 106, 256, 567
BstDEI	CTNAG	3 cut(s)	353, 423, 642
BstF5I	GGATG	2 cut(s)	333, 525
BstFNI	CGCG	1 cut(s)	260
BstHHI	GCGC	4 cut(s)	58, 124, 260, 502
BstKTI	GATC	5 cut(s)	72, 343, 348, 398, 525
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	5 cut(s)	69, 340, 345, 395, 522
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	7 cut(s)	55, 130, 133, 139, 428, 508, 732
BstNI	CCWGG	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	3 cut(s)	484, 514, 679
BstV2I	GAAGAC	2 cut(s)	152, 712
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	5 cut(s)	5, 15, 142, 213, 254
BtsCI	GGATG	2 cut(s)	333, 525
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	2 cut(s)	350, 737
Cac8I	GCNNGC	4 cut(s)	82, 106, 256, 567
CfoI	GCGC	4 cut(s)	58, 124, 260, 502
Cfr10I	RCCGGY	2 cut(s)	80, 254
Cfr13I	GGNCC	5 cut(s)	211, 212, 252, 549, 648
CseI	GACGC	1 cut(s)	97
CviAII	CATG	2 cut(s)	293, 673
DdeI	CTNAG	3 cut(s)	353, 423, 642
DpnI	GATC	5 cut(s)	71, 342, 347, 397, 524
DpnII	GATC	5 cut(s)	69, 340, 345, 395, 522
DraIII	CACNNNGTG	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	23, 201, 455, 695
EarI	CTCTTC	4 cut(s)	23, 201, 455, 695
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	49
Eco24I	GRGCYC	3 cut(s)	51, 215, 359
Eco47I	GGWCC	2 cut(s)	549, 648
Eco53kI	GAGCTC	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	716
Eco88I	CYCGRG	2 cut(s)	233, 249
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	211, 212
EcoRII	CCWGG	1 cut(s)	467
EcoT38I	GRGCYC	3 cut(s)	51, 215, 359
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	2 cut(s)	296, 676
FaiI	YATR	3 cut(s)	294, 401, 674
FatI	CATG	2 cut(s)	292, 672
FbaI	TGATCA	1 cut(s)	522
FblI	GTMKAC	2 cut(s)	9, 153
FokI	GGATG	2 cut(s)	340, 532
FriOI	GRGCYC	3 cut(s)	51, 215, 359
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	4 cut(s)	57, 123, 259, 501
HaeIII	GGCC	5 cut(s)	5, 15, 142, 213, 254
HapII	CCGG	6 cut(s)	81, 180, 190, 255, 302, 689
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	4 cut(s)	58, 124, 260, 502
Hin1II	CATG	2 cut(s)	296, 676
Hin6I	GCGC	4 cut(s)	56, 122, 258, 500
HinP1I	GCGC	4 cut(s)	56, 122, 258, 500
HincII	GTYRAC	2 cut(s)	10, 154
HindII	GTYRAC	2 cut(s)	10, 154
HinfI	GANTC	5 cut(s)	229, 408, 529, 536, 587
HpaII	CCGG	6 cut(s)	81, 180, 190, 255, 302, 689
Hpy166II	GTNNAC	2 cut(s)	10, 154
Hpy188I	TCNGA	3 cut(s)	46, 345, 413
Hpy188III	TCNNGA	4 cut(s)	233, 526, 533, 552
Hpy8I	GTNNAC	2 cut(s)	10, 154
Hpy99I	CGWCG	4 cut(s)	11, 14, 158, 370
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	2 cut(s)	151, 549
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	1 cut(s)	742
HpyF10VI	GCNNNNNNNGC	7 cut(s)	55, 130, 133, 139, 428, 508, 732
HpyF3I	CTNAG	3 cut(s)	353, 423, 642
HpySE526I	ACGT	1 cut(s)	715
Hsp92II	CATG	2 cut(s)	296, 676
HspAI	GCGC	4 cut(s)	56, 122, 258, 500
KroI	GCCGGC	2 cut(s)	80, 254
KroNI	GCCGGC	2 cut(s)	82, 256
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	5 cut(s)	69, 340, 345, 395, 522
LmnI	GCTCC	3 cut(s)	46, 443, 481
Lsp1109I	GCAGC	3 cut(s)	484, 514, 679
MaeII	ACGT	1 cut(s)	715
MalI	GATC	5 cut(s)	71, 342, 347, 397, 524
MbiI	CCGCTC	2 cut(s)	321, 622
MboI	GATC	5 cut(s)	69, 340, 345, 395, 522
MboII	GAAGA	7 cut(s)	10, 157, 218, 388, 472, 712, 717
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	51, 215, 359
MluCI	AATT	1 cut(s)	581
MlyI	GAGTC	3 cut(s)	223, 545, 596
MmeI	TCCRAC	1 cut(s)	385
MroNI	GCCGGC	2 cut(s)	80, 254
MseI	TTAA	2 cut(s)	279, 663
MslI	CAYNNNNRTG	1 cut(s)	742
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	6 cut(s)	81, 180, 190, 255, 302, 689
MspR9I	CCNGG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	469
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	7 cut(s)	55, 130, 133, 139, 428, 508, 732
NaeI	GCCGGC	2 cut(s)	82, 256
NdeII	GATC	5 cut(s)	69, 340, 345, 395, 522
NgoMIV	GCCGGC	2 cut(s)	80, 254
NlaIII	CATG	2 cut(s)	296, 676
NlaIV	GGNNCC	4 cut(s)	213, 214, 397, 483
NmeAIII	GCCGAG	1 cut(s)	162
NsbI	TGCGCA	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	233
PdiI	GCCGGC	2 cut(s)	82, 256
PfeI	GAWTC	2 cut(s)	408, 529
PflFI	GACNNNGTC	1 cut(s)	158
PleI	GAGTC	3 cut(s)	223, 544, 595
PmaCI	CACGTG	1 cut(s)	716
PmlI	CACGTG	1 cut(s)	716
PpsI	GAGTC	3 cut(s)	223, 544, 595
Ppu21I	YACGTR	1 cut(s)	716
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	467
PspCI	CACGTG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	4 cut(s)	213, 214, 397, 483
PspOMI	GGGCCC	1 cut(s)	211
PspPI	GGNCC	5 cut(s)	211, 212, 252, 549, 648
PsuI	RGATCY	1 cut(s)	395
PsyI	GACNNNGTC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	742
SacI	GAGCTC	1 cut(s)	51
SalI	GTCGAC	2 cut(s)	8, 152
SaqAI	TTAA	2 cut(s)	279, 663
Sau3AI	GATC	5 cut(s)	69, 340, 345, 395, 522
Sau96I	GGNCC	5 cut(s)	211, 212, 252, 549, 648
SchI	GAGTC	3 cut(s)	223, 545, 596
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	3 cut(s)	51, 215, 359
Sfr274I	CTCGAG	1 cut(s)	233
SgrDI	CGTCGACG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	549, 648
SlaI	CTCGAG	1 cut(s)	233
SmiMI	CAYNNNNRTG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	233, 662
SmoI	CTYRAG	2 cut(s)	233, 662
Sse9I	AATT	1 cut(s)	581
SspI	AATATT	1 cut(s)	682
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	151, 549
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	8 cut(s)	9, 51, 72, 153, 234, 339, 368, 590
TaqII	GACCGA	1 cut(s)	665
TasI	AATT	1 cut(s)	581
TauI	GCSGC	9 cut(s)	104, 127, 130, 133, 136, 301, 434, 545, 625
TfiI	GAWTC	2 cut(s)	408, 529
Tru1I	TTAA	2 cut(s)	279, 663
Tru9I	TTAA	2 cut(s)	279, 663
TscAI	CASTG	2 cut(s)	357, 744
TseI	GCWGC	3 cut(s)	497, 502, 667
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	357, 744
Tth111I	GACNNNGTC	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	549, 648
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XhoI	CTCGAG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	9, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.