Rw6G017740
BZIP Family

G-box-binding factor 4-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
35096062 .. 35102104
6043 bp
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UTR
Exon/CDS
Intron
Rw6G017740.1

Sequence Viewer

Length: 957 bp
ATGGCGTCGTCGAAGCTGATCTCGTCGTCGTCAAACTCCCGCAACTGCGATCTCTCCCGACGCCCCTCTTCCAATTCCACAAAACCCAAACCACCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCCGCCAACCAAACCCTAAACACCGCCACCGCCGGCGGCGGCTACATTAATCCCACGCCGGTCCAGCTCGGCTCGATGGCCGTCGACGGCCTCTTCTACAACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGTCGGCGCCGCCGAGGCCGAGGACGGTCGACGAGGTCTGGCAGGAGATTGTGTCCGGCGTGAGCCGTAAGGAGTGTAAAGAAGAGGTCCCCGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAAGATAACGACATTAAGGATTTACACCTTGTGCCGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGGATGTTTGGGTTCGATCAGATCACACTGAGCCCGTTCCAGTCGATCGAGAAGATTGAAAAGGTTGAGGGATCCATAGTTGGATTCGGAAATGGTGCTGAGGTGGCGGCGAGTGGAGGAGGAAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCGGCGGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCGATGGCGGTTAGATTAGAAGAGGAGAACGAGCGGCTTTTGAAAGAGAAGGCTGAGAGGACCGAGGAAAGACTTAAGCAGCTCATGGAAAATATTATTCCTGTTGTGGAGAAGAGAAGACCATCACGTGTCCTCCGCAGAGTTCGTTCACTGCAATGGTAG

Protein Analysis

318

Amino Acids

34.69

Weight (kDa)

8.48

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 236 - 293 2.8e-11 bZIP transcription factor
bZIP_2 PF07716 236 - 284 5.5e-08 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 319
AccBSI CCGCTC 3 cut(s) 516, 528, 829
AccI GTMKAC 2 cut(s) 207, 342
AccII CGCG 1 cut(s) 449
AclWI GGATC 2 cut(s) 597, 610
AcoI YGGCCR 1 cut(s) 201
AcvI CACGTG 1 cut(s) 923
AcyI GRCGYC 3 cut(s) 5, 61, 320
AdeI CACNNNGTG 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 765
AflII CTTAAG 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 922
AgsI TTSAA 3 cut(s) 590, 788, 838
AjnI CCWGG 1 cut(s) 674
AluBI AGCT 5 cut(s) 16, 190, 247, 312, 877
AluI AGCT 5 cut(s) 16, 190, 247, 312, 877
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 2 cut(s) 597, 610
Ama87I CYCGRG 2 cut(s) 422, 438
AoxI GGCC 4 cut(s) 201, 211, 329, 441
ApeKI GCWGC 2 cut(s) 704, 874
AseI ATTAAT 1 cut(s) 171
AspLEI GCGC 3 cut(s) 256, 322, 449
AspS9I GGNCC 5 cut(s) 184, 400, 441, 756, 855
AvaI CYCGRG 2 cut(s) 422, 438
AvaII GGWCC 4 cut(s) 184, 400, 756, 855
BamHI GGATCC 1 cut(s) 602
BanI GGYRCC 1 cut(s) 319
BanII GRGCYC 2 cut(s) 249, 566
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BbrPI CACGTG 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 919
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 691, 886
BccI CCATC 3 cut(s) 193, 793, 925
BceAI ACGGC 3 cut(s) 188, 226, 363
BciT130I CCWGG 1 cut(s) 676
BclI TGATCA 1 cut(s) 729
BcoDI GTCTC 1 cut(s) 494
BfoI RGCGCY 1 cut(s) 323
BfrI CTTAAG 1 cut(s) 869
BglI GCCNNNNNGGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 676
Bme18I GGWCC 4 cut(s) 184, 400, 756, 855
BmeT110I CYCGRG 2 cut(s) 422, 438
BmgT120I GGNCC 5 cut(s) 184, 400, 441, 756, 855
BmiI GGNNCC 4 cut(s) 321, 402, 604, 690
BmrFI CCNGG 1 cut(s) 676
BpiI GAAGAC 1 cut(s) 919
Bpu10I CCTNAGC 1 cut(s) 630
BsaAI YACGTR 1 cut(s) 923
BsaHI GRCGYC 3 cut(s) 5, 61, 320
BsaJI CCNNGG 5 cut(s) 240, 326, 332, 675, 858
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 912, 942
Bsc4I CCNNNNNNNGG 1 cut(s) 765
Bse118I RCCGGY 4 cut(s) 155, 181, 278, 443
Bse1I ACTGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 956
BseBI CCWGG 1 cut(s) 676
BseDI CCNNGG 5 cut(s) 240, 326, 332, 675, 858
BseGI GGATG 2 cut(s) 540, 732
BseLI CCNNNNNNNGG 1 cut(s) 765
BseMI GCAATG 1 cut(s) 956
BseMII CTCAG 4 cut(s) 515, 551, 621, 840
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 7 cut(s) 88, 91, 94, 97, 663, 736, 833
BseXI GCAGC 2 cut(s) 691, 886
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 449
Bsh1285I CGRYCG 2 cut(s) 342, 579
BshFI GGCC 4 cut(s) 203, 213, 331, 443
BshNI GGYRCC 1 cut(s) 319
BsiEI CGRYCG 2 cut(s) 342, 579
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 2 cut(s) 422, 438
BsiSI CCGG 6 cut(s) 156, 182, 279, 369, 444, 497
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 1 cut(s) 765
BsmAI GTCTC 1 cut(s) 494
BsmBI CGTCTC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 386
BsnI GGCC 4 cut(s) 203, 213, 331, 443
BsoBI CYCGRG 2 cut(s) 422, 438
Bsp1286I GDGCHC 2 cut(s) 249, 566
Bsp143I GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
BspANI GGCC 4 cut(s) 203, 213, 331, 443
BspCNI CTCAG 4 cut(s) 516, 552, 622, 841
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 4 cut(s) 321, 402, 604, 690
BspPI GGATC 2 cut(s) 597, 610
BspT107I GGYRCC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 869
BsrBI CCGCTC 3 cut(s) 516, 528, 829
BsrDI GCAATG 1 cut(s) 956
BsrFI RCCGGY 4 cut(s) 155, 181, 278, 443
BsrI ACTGG 1 cut(s) 571
BssAI RCCGGY 4 cut(s) 155, 181, 278, 443
BssECI CCNNGG 5 cut(s) 240, 326, 332, 675, 858
BssMI GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
BssNI GRCGYC 3 cut(s) 5, 61, 320
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 2 cut(s) 340, 756
Bst6I CTCTTC 6 cut(s) 73, 221, 390, 662, 810, 902
BstACI GRCGYC 3 cut(s) 5, 61, 320
BstAFI CTTAAG 1 cut(s) 869
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 5 cut(s) 157, 280, 304, 445, 774
BstDEI CTNAG 4 cut(s) 524, 560, 630, 849
BstF5I GGATG 2 cut(s) 540, 732
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 3 cut(s) 256, 322, 449
BstKTI GATC 8 cut(s) 21, 52, 270, 550, 555, 579, 605, 732
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
BstMCI CGRYCG 2 cut(s) 342, 579
BstMWI GCNNNNNNNGC 8 cut(s) 119, 122, 125, 187, 253, 328, 493, 635
BstNI CCWGG 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 674
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 2 cut(s) 691, 886
BstV2I GAAGAC 1 cut(s) 919
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuRI GGCC 4 cut(s) 203, 213, 331, 443
BtsCI GGATG 2 cut(s) 540, 732
BtsI GCAGTG 1 cut(s) 944
BtsIMutI CAGTG 2 cut(s) 557, 944
Cac8I GCNNGC 5 cut(s) 157, 280, 304, 445, 774
CfoI GCGC 3 cut(s) 256, 322, 449
Cfr10I RCCGGY 4 cut(s) 155, 181, 278, 443
Cfr13I GGNCC 5 cut(s) 184, 400, 441, 756, 855
CseI GACGC 2 cut(s) 69, 295
CviAII CATG 1 cut(s) 880
DdeI CTNAG 4 cut(s) 524, 560, 630, 849
DinI GGCGCC 1 cut(s) 321
DpnI GATC 8 cut(s) 20, 51, 269, 549, 554, 578, 604, 731
DpnII GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
DraIII CACNNNGTG 1 cut(s) 484
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 6 cut(s) 73, 221, 390, 662, 810, 902
EarI CTCTTC 6 cut(s) 73, 221, 390, 662, 810, 902
EciI GGCGGA 2 cut(s) 100, 286
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 249, 566
Eco47I GGWCC 4 cut(s) 184, 400, 756, 855
Eco53kI GAGCTC 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 923
Eco88I CYCGRG 2 cut(s) 422, 438
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 674
EcoT38I GRGCYC 2 cut(s) 249, 566
EgeI GGCGCC 1 cut(s) 321
EheI GGCGCC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 494
FaeI CATG 1 cut(s) 883
FaiI YATR 2 cut(s) 608, 881
FaqI GGGAC 1 cut(s) 386
FatI CATG 1 cut(s) 879
FauI CCCGC 1 cut(s) 47
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 2 cut(s) 207, 342
FokI GGATG 2 cut(s) 547, 739
FriOI GRGCYC 2 cut(s) 249, 566
GlaI GCGC 3 cut(s) 255, 321, 448
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 4 cut(s) 203, 213, 331, 443
HapII CCGG 6 cut(s) 156, 182, 279, 369, 444, 497
HgaI GACGC 2 cut(s) 69, 295
HhaI GCGC 3 cut(s) 256, 322, 449
Hin1I GRCGYC 3 cut(s) 5, 61, 320
Hin1II CATG 1 cut(s) 883
Hin6I GCGC 3 cut(s) 254, 320, 447
HinP1I GCGC 3 cut(s) 254, 320, 447
HincII GTYRAC 2 cut(s) 208, 343
HindII GTYRAC 2 cut(s) 208, 343
HinfI GANTC 5 cut(s) 418, 615, 736, 743, 794
HpaII CCGG 6 cut(s) 156, 182, 279, 369, 444, 497
Hpy166II GTNNAC 3 cut(s) 208, 343, 944
Hpy188I TCNGA 3 cut(s) 244, 552, 620
Hpy188III TCNNGA 6 cut(s) 57, 422, 580, 733, 740, 759
Hpy8I GTNNAC 3 cut(s) 208, 343, 944
Hpy99I CGWCG 9 cut(s) 10, 13, 28, 31, 63, 209, 212, 319, 347
HpyAV CCTTC 2 cut(s) 648, 838
HpyCH4III ACNGT 2 cut(s) 340, 756
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 2 cut(s) 707, 949
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 122, 125, 187, 253, 328, 493, 635
HpyF3I CTNAG 4 cut(s) 524, 560, 630, 849
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 3 cut(s) 5, 61, 320
Hsp92II CATG 1 cut(s) 883
HspAI GCGC 3 cut(s) 254, 320, 447
KasI GGCGCC 1 cut(s) 319
KroI GCCGGC 3 cut(s) 155, 278, 443
KroNI GCCGGC 3 cut(s) 157, 280, 445
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
LmnI GCTCC 2 cut(s) 244, 688
Lsp1109I GCAGC 2 cut(s) 691, 886
MaeII ACGT 1 cut(s) 922
MalI GATC 8 cut(s) 20, 51, 269, 549, 554, 578, 604, 731
MbiI CCGCTC 3 cut(s) 516, 528, 829
MboI GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
MboII GAAGA 9 cut(s) 60, 208, 407, 467, 595, 679, 827, 919, 924
MflI RGATCY 1 cut(s) 602
MhlI GDGCHC 2 cut(s) 249, 566
MluCI AATT 2 cut(s) 73, 788
Mly113I GGCGCC 1 cut(s) 320
MlyI GAGTC 3 cut(s) 412, 752, 803
MmeI TCCRAC 1 cut(s) 592
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 3 cut(s) 155, 278, 443
MseI TTAA 3 cut(s) 171, 468, 870
MslI CAYNNNNRTG 1 cut(s) 949
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 6 cut(s) 156, 182, 279, 369, 444, 497
MspR9I CCNGG 1 cut(s) 676
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 8 cut(s) 119, 122, 125, 187, 253, 328, 493, 635
NaeI GCCGGC 3 cut(s) 157, 280, 445
NarI GGCGCC 1 cut(s) 320
NdeII GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
NgoMIV GCCGGC 3 cut(s) 155, 278, 443
NlaIII CATG 1 cut(s) 883
NlaIV GGNNCC 4 cut(s) 321, 402, 604, 690
NmeAIII GCCGAG 3 cut(s) 171, 351, 357
PaeR7I CTCGAG 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PdiI GCCGGC 3 cut(s) 157, 280, 445
PfeI GAWTC 2 cut(s) 615, 736
PflFI GACNNNGTC 1 cut(s) 347
Ple19I CGATCG 1 cut(s) 579
PleI GAGTC 3 cut(s) 412, 751, 802
PluTI GGCGCC 1 cut(s) 323
PmaCI CACGTG 1 cut(s) 923
PmlI CACGTG 1 cut(s) 923
PpsI GAGTC 3 cut(s) 412, 751, 802
Ppu21I YACGTR 1 cut(s) 923
PpuMI RGGWCCY 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 674
PspCI CACGTG 1 cut(s) 923
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 4 cut(s) 321, 402, 604, 690
PspPI GGNCC 5 cut(s) 184, 400, 441, 756, 855
PspPPI RGGWCCY 1 cut(s) 400
PsuI RGATCY 1 cut(s) 602
PsyI GACNNNGTC 1 cut(s) 347
PvuI CGATCG 1 cut(s) 579
RseI CAYNNNNRTG 1 cut(s) 949
SacI GAGCTC 1 cut(s) 249
SalI GTCGAC 2 cut(s) 206, 341
SaqAI TTAA 3 cut(s) 171, 468, 870
Sau3AI GATC 8 cut(s) 18, 49, 267, 547, 552, 576, 602, 729
Sau96I GGNCC 5 cut(s) 184, 400, 441, 756, 855
SchI GAGTC 3 cut(s) 412, 752, 803
ScrFI CCNGG 1 cut(s) 676
SduI GDGCHC 2 cut(s) 249, 566
SfoI GGCGCC 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 422
SgrAI CRCCGGYG 1 cut(s) 155
SgrDI CGTCGACG 1 cut(s) 206
SinI GGWCC 4 cut(s) 184, 400, 756, 855
SlaI CTCGAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 949
SmlI CTYRAG 2 cut(s) 422, 869
SmoI CTYRAG 2 cut(s) 422, 869
Sse9I AATT 2 cut(s) 73, 788
SspDI GGCGCC 1 cut(s) 319
SspI AATATT 1 cut(s) 889
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 674
TaaI ACNGT 2 cut(s) 340, 756
TaiI ACGT 1 cut(s) 925
TaqII GACCGA 1 cut(s) 872
TasI AATT 2 cut(s) 73, 788
TfiI GAWTC 2 cut(s) 615, 736
Tru1I TTAA 3 cut(s) 171, 468, 870
Tru9I TTAA 3 cut(s) 171, 468, 870
TscAI CASTG 2 cut(s) 564, 951
TseI GCWGC 2 cut(s) 704, 874
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 2 cut(s) 564, 951
Tth111I GACNNNGTC 1 cut(s) 347
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 4 cut(s) 184, 400, 756, 855
VspI ATTAAT 1 cut(s) 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 422
XmiI GTMKAC 2 cut(s) 207, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.