RLG00000001893
BZIP Family

G-box-binding factor 4-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
22619019 .. 22621843
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001893

Sequence Viewer

Length: 816 bp
ATGGCGTCGTCGAAGTTAGTATCAGTCTCCACGCCCAATTCGGATCTGCCACGCGACTCCTCTATATGTTCTCTCTCCACTCTCATCGCCGACGTCGACAAGCACAACCACTCCATCACCATGGACGACCTCCTCAAGAACATCTACAACGACCAACCCTCGGCCTCTCCGCCGCCGCCTCCGTCCATGGACGGAGGAGCCTCCGCCTCGGCCGCCGCGCCGGGGAGGACGGTGGAGGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGGCGGAGGAGGAGCTGACGGAGAGGACGAGGCCGCGGAGAGGGAGGCGGATCAGGTGCGGGCGGAGATGACGTTGGAGGATTTTCTGACCAGGGCTGGGGCCGTGAGGGAGGAGGACGTCGGCGTGGGACCCGGGGCGGTGGTTCCGATCGGGTACGGGCAGTTCCAGGTGCAGCCTCCTCCGCCGCCTCAGCCTCAAGGTCAATTGGTGTACGCAAACAACAACAATGGAGCAACGAGTGGAGGTGGGAGAGGAACGAAGAGGAGAGCTGTGCAGGAGGCGCCGCTTGATAAGGCGACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAATCCGCTGCCAGGTCAAGGGAACGCAAGCAGGCTTACACAGTGGAGCTAGAATCTCTGGTGACGCAACTGGAGGAGGAAAATGCACGCCTCATGAGGGAAGAGGCTGAGCTGAAGAAGGAGAGGTATAAGAAGCTCATGGAGAACCTCATTCCTGTTGTGGAGAAGAGGAGACCTGCACGTGTTCTTCGGAGAGTGCAATCTGTGCACTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

272

Amino Acids

29.5

Weight (kDa)

6.06

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 189 - 249 1.7e-14 bZIP transcription factor
bZIP_2 PF07716 190 - 241 4.1e-11 Basic region leucine zipper
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 96, 387
Acc36I ACCTGC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 547
AccI GTMKAC 1 cut(s) 96
AccII CGCG 3 cut(s) 54, 218, 302
AclWI GGATC 2 cut(s) 51, 324
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 734
AcvI CACGTG 1 cut(s) 782
AcyI GRCGYC 4 cut(s) 5, 93, 384, 548
AfaI GTAC 2 cut(s) 422, 479
AfiI CCNNNNNNNGG 7 cut(s) 160, 222, 306, 363, 612, 618, 697
AflIII ACRYGT 1 cut(s) 781
AjnI CCWGG 3 cut(s) 356, 432, 611
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 281, 536, 649, 712, 736
AluI AGCT 5 cut(s) 281, 536, 649, 712, 736
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 2 cut(s) 31, 766
Alw44I GTGCAC 1 cut(s) 806
AlwI GGATC 2 cut(s) 51, 324
Ama87I CYCGRG 1 cut(s) 398
AoxI GGCC 4 cut(s) 162, 210, 297, 366
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 3 cut(s) 439, 568, 608
AspLEI GCGC 2 cut(s) 220, 550
AspS9I GGNCC 2 cut(s) 366, 395
AsuC2I CCSGG 3 cut(s) 222, 399, 400
AsuHPI GGTGA 2 cut(s) 109, 673
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 810
BanI GGYRCC 1 cut(s) 547
BbrPI CACGTG 1 cut(s) 782
Bbv12I GWGCWC 1 cut(s) 810
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 451, 580, 595
BccI CCATC 1 cut(s) 122
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 3 cut(s) 358, 434, 613
BclI TGATCA 1 cut(s) 588
BcnI CCSGG 3 cut(s) 222, 399, 400
BcoDI GTCTC 2 cut(s) 31, 766
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 551
BfuAI ACCTGC 1 cut(s) 784
BlpI GCTNAGC 1 cut(s) 708
Bme1390I CCNGG 6 cut(s) 222, 358, 399, 400, 434, 613
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 366, 395
BmiI GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 549
BmrFI CCNGG 6 cut(s) 222, 358, 399, 400, 434, 613
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 119, 447
BpuMI CCSGG 3 cut(s) 222, 399, 400
BsaAI YACGTR 1 cut(s) 782
BsaHI GRCGYC 4 cut(s) 5, 93, 384, 548
BsaI GGTCTC 1 cut(s) 766
BsaJI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 323, 353
Bsc4I CCNNNNNNNGG 7 cut(s) 160, 222, 306, 363, 612, 618, 697
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 675, 815
BseBI CCWGG 3 cut(s) 358, 434, 613
BseDI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BseGI GGATG 1 cut(s) 591
BseLI CCNNNNNNNGG 7 cut(s) 160, 222, 306, 363, 612, 618, 697
BseMII CTCAG 2 cut(s) 470, 699
BseNI ACTGG 2 cut(s) 675, 815
BseSI GKGCMC 1 cut(s) 810
BseX3I CGGCCG 1 cut(s) 210
BseXI GCAGC 3 cut(s) 451, 580, 595
BseYI CCCAGC 1 cut(s) 362
BsgI GTGCAG 3 cut(s) 458, 560, 762
Bsh1236I CGCG 3 cut(s) 54, 218, 302
Bsh1285I CGRYCG 2 cut(s) 213, 417
BshFI GGCC 4 cut(s) 164, 212, 299, 368
BshNI GGYRCC 1 cut(s) 547
BsiEI CGRYCG 2 cut(s) 213, 417
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 3 cut(s) 221, 261, 399
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 7 cut(s) 160, 222, 306, 363, 612, 618, 697
BsmAI GTCTC 2 cut(s) 31, 766
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 4 cut(s) 164, 212, 299, 368
Bso31I GGTCTC 1 cut(s) 766
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 5 cut(s) 43, 252, 316, 414, 588
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp19I CCATGG 2 cut(s) 120, 186
BspANI GGCC 4 cut(s) 164, 212, 299, 368
BspCNI CTCAG 2 cut(s) 469, 700
BspFNI CGCG 3 cut(s) 54, 218, 302
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 549
BspMI ACCTGC 1 cut(s) 784
BspPI GGATC 2 cut(s) 51, 324
BspT107I GGYRCC 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 766
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 675, 815
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 9 cut(s) 120, 159, 186, 207, 221, 300, 357, 398, 399
BssMI GATC 5 cut(s) 43, 252, 316, 414, 588
BssNI GRCGYC 4 cut(s) 5, 93, 384, 548
BssT1I CCWWGG 2 cut(s) 120, 186
Bst2UI CCWGG 3 cut(s) 358, 434, 613
Bst4CI ACNGT 2 cut(s) 232, 643
Bst6I CTCTTC 3 cut(s) 521, 696, 761
BstACI GRCGYC 4 cut(s) 5, 93, 384, 548
BstAPI GCANNNNNTGC 1 cut(s) 805
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 5 cut(s) 262, 327, 629, 633, 688
BstDEI CTNAG 2 cut(s) 456, 708
BstDSI CCRYGG 3 cut(s) 120, 186, 300
BstF5I GGATG 1 cut(s) 591
BstFNI CGCG 3 cut(s) 54, 218, 302
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 2 cut(s) 220, 550
BstKTI GATC 5 cut(s) 46, 255, 319, 417, 591
BstMAI GTCTC 2 cut(s) 31, 766
BstMBI GATC 5 cut(s) 43, 252, 316, 414, 588
BstMCI CGRYCG 2 cut(s) 213, 417
BstMWI GCNNNNNNNGC 6 cut(s) 212, 448, 457, 547, 574, 805
BstNI CCWGG 3 cut(s) 358, 434, 613
BstSCI CCNGG 6 cut(s) 220, 356, 397, 398, 432, 611
BstSLI GKGCMC 1 cut(s) 810
BstUI CGCG 3 cut(s) 54, 218, 302
BstV1I GCAGC 3 cut(s) 451, 580, 595
BstX2I RGATCY 1 cut(s) 43
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 210
BsuRI GGCC 4 cut(s) 164, 212, 299, 368
BtgI CCRYGG 3 cut(s) 120, 186, 300
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 648, 808
BveI ACCTGC 1 cut(s) 784
Cac8I GCNNGC 5 cut(s) 262, 327, 629, 633, 688
CciI TCATGA 1 cut(s) 693
CfoI GCGC 2 cut(s) 220, 550
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 366, 395
Cfr42I CCGCGG 1 cut(s) 303
Cfr9I CCCGGG 1 cut(s) 398
CseI GACGC 2 cut(s) 574, 673
Csp6I GTAC 2 cut(s) 421, 478
CviAII CATG 4 cut(s) 121, 187, 694, 739
CviQI GTAC 2 cut(s) 421, 478
DdeI CTNAG 2 cut(s) 456, 708
DinI GGCGCC 1 cut(s) 549
DpnI GATC 5 cut(s) 45, 254, 318, 416, 590
DpnII GATC 5 cut(s) 43, 252, 316, 414, 588
EaeI YGGCCR 1 cut(s) 210
EagI CGGCCG 1 cut(s) 210
Eam1104I CTCTTC 3 cut(s) 521, 696, 761
EarI CTCTTC 3 cut(s) 521, 696, 761
EciI GGCGGA 7 cut(s) 159, 193, 279, 285, 329, 344, 438
EclXI CGGCCG 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 120, 186
Eco31I GGTCTC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 395
Eco52I CGGCCG 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 734
Eco72I CACGTG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 356, 432, 611
EcoT14I CCWWGG 2 cut(s) 120, 186
EgeI GGCGCC 1 cut(s) 549
EheI GGCGCC 1 cut(s) 549
ErhI CCWWGG 2 cut(s) 120, 186
FaeI CATG 4 cut(s) 124, 190, 697, 742
FaiI YATR 7 cut(s) 65, 67, 122, 188, 695, 729, 740
FaqI GGGAC 1 cut(s) 408
FatI CATG 4 cut(s) 120, 186, 693, 738
FauI CCCGC 1 cut(s) 318
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 96
FokI GGATG 1 cut(s) 598
FspBI CTAG 1 cut(s) 650
GlaI GCGC 2 cut(s) 219, 549
GsaI CCCAGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 692
HaeII RGCGCY 1 cut(s) 551
HaeIII GGCC 4 cut(s) 164, 212, 299, 368
HapII CCGG 3 cut(s) 221, 261, 399
HgaI GACGC 2 cut(s) 574, 673
HhaI GCGC 2 cut(s) 220, 550
Hin1I GRCGYC 4 cut(s) 5, 93, 384, 548
Hin1II CATG 4 cut(s) 124, 190, 697, 742
Hin6I GCGC 2 cut(s) 218, 548
HinP1I GCGC 2 cut(s) 218, 548
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 3 cut(s) 56, 602, 653
HpaII CCGG 3 cut(s) 221, 261, 399
HphI GGTGA 2 cut(s) 109, 673
Hpy166II GTNNAC 3 cut(s) 97, 478, 808
Hpy188I TCNGA 4 cut(s) 43, 354, 414, 792
Hpy188III TCNNGA 4 cut(s) 136, 244, 592, 694
Hpy8I GTNNAC 3 cut(s) 97, 478, 808
Hpy99I CGWCG 7 cut(s) 10, 13, 95, 98, 260, 389, 568
HpyAV CCTTC 2 cut(s) 241, 712
HpyCH4III ACNGT 2 cut(s) 232, 643
HpyCH4IV ACGT 4 cut(s) 93, 338, 384, 781
HpyCH4V TGCA 6 cut(s) 439, 541, 686, 779, 799, 808
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 448, 457, 547, 574, 805
HpyF3I CTNAG 2 cut(s) 456, 708
HpySE526I ACGT 4 cut(s) 93, 338, 384, 781
Hsp92I GRCGYC 4 cut(s) 5, 93, 384, 548
Hsp92II CATG 4 cut(s) 124, 190, 697, 742
HspAI GCGC 2 cut(s) 218, 548
KasI GGCGCC 1 cut(s) 547
KflI GGGWCCC 1 cut(s) 395
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Ksp22I TGATCA 1 cut(s) 588
KspI CCGCGG 1 cut(s) 303
Kzo9I GATC 5 cut(s) 43, 252, 316, 414, 588
LmnI GCTCC 4 cut(s) 197, 278, 497, 646
Lsp1109I GCAGC 3 cut(s) 451, 580, 595
MaeI CTAG 1 cut(s) 650
MaeII ACGT 4 cut(s) 93, 338, 384, 781
MaeIII GTNAC 1 cut(s) 661
MalI GATC 5 cut(s) 45, 254, 318, 416, 590
MboI GATC 5 cut(s) 43, 252, 316, 414, 588
MboII GAAGA 5 cut(s) 538, 713, 727, 778, 779
MfeI CAATTG 1 cut(s) 470
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 2 cut(s) 37, 470
Mly113I GGCGCC 1 cut(s) 548
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 321
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 119
MspA1I CMGCKG 2 cut(s) 302, 608
MspI CCGG 3 cut(s) 221, 261, 399
MspR9I CCNGG 6 cut(s) 222, 358, 399, 400, 434, 613
MunI CAATTG 1 cut(s) 470
MvaI CCWGG 3 cut(s) 358, 434, 613
MvnI CGCG 3 cut(s) 54, 218, 302
MwoI GCNNNNNNNGC 6 cut(s) 212, 448, 457, 547, 574, 805
NaeI GCCGGC 1 cut(s) 262
NarI GGCGCC 1 cut(s) 548
NciI CCSGG 3 cut(s) 222, 399, 400
NcoI CCATGG 2 cut(s) 120, 186
NdeII GATC 5 cut(s) 43, 252, 316, 414, 588
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 124, 190, 697, 742
NlaIV GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 549
NmeAIII GCCGAG 2 cut(s) 140, 188
NmuCI GTSAC 1 cut(s) 661
PagI TCATGA 1 cut(s) 693
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 291
PdiI GCCGGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 602, 653
Ple19I CGATCG 1 cut(s) 417
PleI GAGTC 1 cut(s) 50
PluTI GGCGCC 1 cut(s) 551
PmaCI CACGTG 1 cut(s) 782
PmlI CACGTG 1 cut(s) 782
PpsI GAGTC 1 cut(s) 50
Ppu21I YACGTR 1 cut(s) 782
PpuMI RGGWCCY 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 395
Psp6I CCWGG 3 cut(s) 356, 432, 611
PspCI CACGTG 1 cut(s) 782
PspFI CCCAGC 1 cut(s) 362
PspGI CCWGG 3 cut(s) 356, 432, 611
PspN4I GGNNCC 6 cut(s) 199, 367, 396, 397, 411, 549
PspPI GGNCC 2 cut(s) 366, 395
PspPPI RGGWCCY 1 cut(s) 395
PsrI GAACNNNNNNTAC 2 cut(s) 413, 445
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 417
RsaI GTAC 2 cut(s) 422, 479
RsaNI GTAC 2 cut(s) 421, 478
RseI CAYNNNNRTG 1 cut(s) 119
SacII CCGCGG 1 cut(s) 303
SalI GTCGAC 1 cut(s) 95
Sau3AI GATC 5 cut(s) 43, 252, 316, 414, 588
Sau96I GGNCC 2 cut(s) 366, 395
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 6 cut(s) 222, 358, 399, 400, 434, 613
SduI GDGCHC 1 cut(s) 810
SfoI GGCGCC 1 cut(s) 549
Sfr303I CCGCGG 1 cut(s) 303
SgrAI CRCCGGYG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 303
SinI GGWCC 1 cut(s) 395
SmaI CCCGGG 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 134, 462
SmoI CTYRAG 2 cut(s) 134, 462
Sse9I AATT 2 cut(s) 37, 470
SspDI GGCGCC 1 cut(s) 547
SspMI CTAG 1 cut(s) 650
StyD4I CCNGG 6 cut(s) 220, 356, 397, 398, 432, 611
StyI CCWWGG 2 cut(s) 120, 186
TaaI ACNGT 2 cut(s) 232, 643
TaiI ACGT 4 cut(s) 96, 341, 387, 784
TaqI TCGA 2 cut(s) 11, 96
TasI AATT 2 cut(s) 37, 470
TauI GCSGC 7 cut(s) 175, 178, 215, 218, 302, 454, 553
TfiI GAWTC 2 cut(s) 602, 653
TscAI CASTG 2 cut(s) 648, 815
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 3 cut(s) 439, 568, 608
Tsp45I GTSAC 1 cut(s) 661
TspGWI ACGGA 3 cut(s) 171, 207, 300
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 2 cut(s) 648, 815
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 395
XmaI CCCGGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 650
ZraI GACGTC 2 cut(s) 94, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.