Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

45902440 .. 45906595

Gene Structure 4156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G562000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATGGCGTCTTCGAAGATGGTGGTGTCAACGACGAATTCGGATCTGCCGCACAGAGAGTCGTCTATATGTTCGCTCTCCACTCTCATGGCCGACGACGACGACCAAAACGACGAGCAGCAATCCATGACCATGGACGACATCCTCAAGAACATCTACACCACCACCACGACCACCACCACAAACGACATGGACGACAACAATCATCATCATGCGGAGCCCAGGACCGTGGACGAGGTCTGGAAGGAGATCGTCGCCGGCGGAGTGGGAGTGGAGGAGGCGGCGGCGGAGGGCGAGGGCGGTGGGGATCAGGTGCGGGCAGCTGCACCGGAGGAGATGACGTTGGAGGACTTTCTCACCAGGGCTGGGGCGGTGAGGGAAGATGACGTCACCGTTGGTGCCGCTGGGGTTCCGATTGGGTACGGGCAGTTCCAGGTGCAGCCGCCGCCGGCTCCTGCTCAAGGGCAGGTGGTGTACGGAAACGGGACGACGACGAGTACGAGTGGAGGCGGCGGGGGAGGAGGTGGAGGAGGGAGAGCTGGGAAGAGGAGAGCTGTGCAGGAAGCTCCGCTTGATAAGGCCACGCAGCAGAAGCAGAGGAGGATGATCAAGAACAGAGAGTCCGCTGCCAGGTCCAGGGAACGCAAGCAGGCTTACACGGTTGAGCTAGAATCTCTGGTAACGCAGCTAGAGGAGGAAAATGCGCGGCTAGTGAGAGAAGAGGCCGAGCAAAAGAAGGAGAGGTTTAAGCGGCTCATGGAGAACCTCATTCCTATTGTAGAGCAGCGGAGACCACCACGTGTTCTTCGGAGAGTGCATTCAGTGCACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

278

Amino Acids

30.31

Weight (kDa)

5.23

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	398
AccII	CGCG	1 cut(s)	706
AclWI	GGATC	2 cut(s)	51, 315
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	37
AcvI	CACGTG	1 cut(s)	800
AcyI	GRCGYC	2 cut(s)	8, 387
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	3 cut(s)	422, 476, 499
AfiI	CCNNNNNNNGG	4 cut(s)	366, 461, 630, 636
AflIII	ACRYGT	1 cut(s)	799
AjnI	CCWGG	5 cut(s)	221, 359, 432, 629, 635
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	323, 539, 554, 566, 667, 688
AluI	AGCT	6 cut(s)	323, 539, 554, 566, 667, 688
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	1 cut(s)	784
Alw44I	GTGCAC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	51, 315
AoxI	GGCC	3 cut(s)	90, 579, 723
ApaLI	GTGCAC	1 cut(s)	824
ApeKI	GCWGC	8 cut(s)	118, 320, 323, 439, 586, 626, 685, 784
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	2 cut(s)	225, 633
AsuHPI	GGTGA	3 cut(s)	349, 382, 385
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	225, 633
BaeGI	GKGCMC	1 cut(s)	828
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	222
BbrPI	CACGTG	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	8 cut(s)	130, 310, 332, 451, 598, 613, 697, 796
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	5 cut(s)	223, 361, 434, 631, 637
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	3 cut(s)	668, 689, 710
BfuAI	ACCTGC	1 cut(s)	457
Bme1390I	CCNGG	5 cut(s)	223, 361, 434, 631, 637
Bme18I	GGWCC	2 cut(s)	225, 633
BmgT120I	GGNCC	2 cut(s)	225, 633
BmiI	GGNNCC	4 cut(s)	219, 400, 411, 453
BmrFI	CCNGG	5 cut(s)	223, 361, 434, 631, 637
BpiI	GAAGAC	1 cut(s)	3
Bpu14I	TTCGAA	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	131, 444
BsaAI	YACGTR	1 cut(s)	800
BsaHI	GRCGYC	2 cut(s)	8, 387
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	5 cut(s)	132, 221, 228, 360, 636
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 285, 326, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	366, 461, 630, 636
Bse118I	RCCGGY	2 cut(s)	257, 448
Bse1I	ACTGG	1 cut(s)	833
BseBI	CCWGG	5 cut(s)	223, 361, 434, 631, 637
BseDI	CCNNGG	5 cut(s)	132, 221, 228, 360, 636
BseGI	GGATG	2 cut(s)	141, 609
BseLI	CCNNNNNNNGG	4 cut(s)	366, 461, 630, 636
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	7 cut(s)	290, 347, 534, 543, 562, 613, 707
BseSI	GKGCMC	1 cut(s)	828
BseXI	GCAGC	8 cut(s)	130, 310, 332, 451, 598, 613, 697, 796
BseYI	CCCAGC	3 cut(s)	365, 404, 539
BsgI	GTGCAG	3 cut(s)	309, 458, 578
Bsh1236I	CGCG	1 cut(s)	706
BshFI	GGCC	3 cut(s)	92, 581, 725
BshNI	GGYRCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	828
BsiSI	CCGG	3 cut(s)	258, 329, 449
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	4 cut(s)	366, 461, 630, 636
BsmAI	GTCTC	1 cut(s)	784
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	3 cut(s)	92, 581, 725
Bso31I	GGTCTC	1 cut(s)	784
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	222, 828
Bsp143I	GATC	4 cut(s)	43, 249, 307, 606
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	3 cut(s)	92, 581, 725
BspFNI	CGCG	1 cut(s)	706
BspLI	GGNNCC	4 cut(s)	219, 400, 411, 453
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	51, 315
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	784
BsrFI	RCCGGY	2 cut(s)	257, 448
BsrI	ACTGG	1 cut(s)	833
BssAI	RCCGGY	2 cut(s)	257, 448
BssECI	CCNNGG	5 cut(s)	132, 221, 228, 360, 636
BssMI	GATC	4 cut(s)	43, 249, 307, 606
BssNI	GRCGYC	2 cut(s)	8, 387
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	5 cut(s)	223, 361, 434, 631, 637
Bst4CI	ACNGT	3 cut(s)	229, 394, 661
Bst6I	CTCTTC	2 cut(s)	539, 714
BstACI	GRCGYC	2 cut(s)	8, 387
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	800
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	5 cut(s)	259, 318, 450, 647, 651
BstDSI	CCRYGG	2 cut(s)	132, 228
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	2 cut(s)	141, 609
BstFNI	CGCG	1 cut(s)	706
BstHHI	GCGC	1 cut(s)	706
BstKTI	GATC	4 cut(s)	46, 252, 310, 609
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	4 cut(s)	43, 249, 307, 606
BstMWI	GCNNNNNNNGC	3 cut(s)	445, 592, 823
BstNI	CCWGG	5 cut(s)	223, 361, 434, 631, 637
BstSCI	CCNGG	5 cut(s)	221, 359, 432, 629, 635
BstSLI	GKGCMC	1 cut(s)	828
BstUI	CGCG	1 cut(s)	706
BstV1I	GCAGC	8 cut(s)	130, 310, 332, 451, 598, 613, 697, 796
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	3 cut(s)	88, 133, 229
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	92, 581, 725
BtgI	CCRYGG	2 cut(s)	132, 228
BtsCI	GGATG	2 cut(s)	141, 609
BtsIMutI	CAGTG	2 cut(s)	826, 828
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	5 cut(s)	259, 318, 450, 647, 651
CfoI	GCGC	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	257, 448
Cfr13I	GGNCC	2 cut(s)	225, 633
Csp6I	GTAC	3 cut(s)	421, 475, 498
CviAII	CATG	6 cut(s)	88, 127, 133, 190, 212, 757
CviQI	GTAC	3 cut(s)	421, 475, 498
DpnI	GATC	4 cut(s)	45, 251, 309, 608
DpnII	GATC	4 cut(s)	43, 249, 307, 606
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	539, 714
EarI	CTCTTC	2 cut(s)	539, 714
EciI	GGCGGA	2 cut(s)	276, 302
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	784
Eco47I	GGWCC	2 cut(s)	225, 633
Eco72I	CACGTG	1 cut(s)	800
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	5 cut(s)	221, 359, 432, 629, 635
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	6 cut(s)	91, 130, 136, 193, 215, 760
FaiI	YATR	8 cut(s)	68, 70, 89, 128, 134, 191, 213, 758
FalI	AAGNNNNNCTT	2 cut(s)	555, 587
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	6 cut(s)	87, 126, 132, 189, 211, 756
FauI	CCCGC	2 cut(s)	309, 506
FbaI	TGATCA	1 cut(s)	606
FokI	GGATG	2 cut(s)	128, 616
FriOI	GRGCYC	1 cut(s)	222
FspBI	CTAG	3 cut(s)	668, 689, 710
GlaI	GCGC	1 cut(s)	705
GsaI	CCCAGC	3 cut(s)	369, 408, 543
HaeIII	GGCC	3 cut(s)	92, 581, 725
HapII	CCGG	3 cut(s)	258, 329, 449
HhaI	GCGC	1 cut(s)	706
Hin1I	GRCGYC	2 cut(s)	8, 387
Hin1II	CATG	6 cut(s)	91, 130, 136, 193, 215, 760
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	3 cut(s)	59, 620, 671
HpaII	CCGG	3 cut(s)	258, 329, 449
HphI	GGTGA	3 cut(s)	349, 382, 385
Hpy166II	GTNNAC	4 cut(s)	30, 232, 475, 826
Hpy188I	TCNGA	3 cut(s)	43, 414, 810
Hpy188III	TCNNGA	3 cut(s)	148, 241, 610
Hpy8I	GTNNAC	4 cut(s)	30, 232, 475, 826
Hpy99I	CGWCG	8 cut(s)	37, 98, 101, 104, 116, 257, 493, 496
HpyAV	CCTTC	2 cut(s)	238, 730
HpyCH4III	ACNGT	3 cut(s)	229, 394, 661
HpyCH4IV	ACGT	3 cut(s)	341, 387, 799
HpyCH4V	TGCA	5 cut(s)	326, 439, 559, 817, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	445, 592, 823
HpySE526I	ACGT	3 cut(s)	341, 387, 799
Hsp92I	GRCGYC	2 cut(s)	8, 387
Hsp92II	CATG	6 cut(s)	91, 130, 136, 193, 215, 760
HspAI	GCGC	1 cut(s)	704
KroI	GCCGGC	2 cut(s)	257, 448
KroNI	GCCGGC	2 cut(s)	259, 450
Ksp22I	TGATCA	1 cut(s)	606
Kzo9I	GATC	4 cut(s)	43, 249, 307, 606
LmnI	GCTCC	3 cut(s)	217, 457, 571
Lsp1109I	GCAGC	8 cut(s)	130, 310, 332, 451, 598, 613, 697, 796
MaeI	CTAG	3 cut(s)	668, 689, 710
MaeII	ACGT	3 cut(s)	341, 387, 799
MaeIII	GTNAC	2 cut(s)	388, 679
MalI	GATC	4 cut(s)	45, 251, 309, 608
MboI	GATC	4 cut(s)	43, 249, 307, 606
MboII	GAAGA	6 cut(s)	3, 28, 392, 556, 731, 797
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	2 cut(s)	222, 828
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	68, 629
MmeI	TCCRAC	1 cut(s)	324
MreI	CGCCGGCG	1 cut(s)	257
MroNI	GCCGGC	2 cut(s)	257, 448
MseI	TTAA	1 cut(s)	747
MslI	CAYNNNNRTG	3 cut(s)	86, 131, 210
MspA1I	CMGCKG	4 cut(s)	323, 404, 626, 787
MspI	CCGG	3 cut(s)	258, 329, 449
MspR9I	CCNGG	5 cut(s)	223, 361, 434, 631, 637
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	5 cut(s)	223, 361, 434, 631, 637
MvnI	CGCG	1 cut(s)	706
MwoI	GCNNNNNNNGC	3 cut(s)	445, 592, 823
NaeI	GCCGGC	2 cut(s)	259, 450
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	43, 249, 307, 606
NgoMIV	GCCGGC	2 cut(s)	257, 448
NlaIII	CATG	6 cut(s)	91, 130, 136, 193, 215, 760
NlaIV	GGNNCC	4 cut(s)	219, 400, 411, 453
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	3 cut(s)	108, 192, 497
PctI	GAATGC	1 cut(s)	817
PdiI	GCCGGC	2 cut(s)	259, 450
PfeI	GAWTC	1 cut(s)	671
PflFI	GACNNNGTC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	67, 628
PmaCI	CACGTG	1 cut(s)	800
PmlI	CACGTG	1 cut(s)	800
PpsI	GAGTC	2 cut(s)	67, 628
Ppu21I	YACGTR	1 cut(s)	800
Psp6I	CCWGG	5 cut(s)	221, 359, 432, 629, 635
PspCI	CACGTG	1 cut(s)	800
PspFI	CCCAGC	3 cut(s)	365, 404, 539
PspGI	CCWGG	5 cut(s)	221, 359, 432, 629, 635
PspN4I	GGNNCC	4 cut(s)	219, 400, 411, 453
PspPI	GGNCC	2 cut(s)	225, 633
PsrI	GAACNNNNNNTAC	2 cut(s)	413, 445
PsuI	RGATCY	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	3 cut(s)	422, 476, 499
RsaNI	GTAC	3 cut(s)	421, 475, 498
RseI	CAYNNNNRTG	3 cut(s)	86, 131, 210
SaqAI	TTAA	1 cut(s)	747
Sau3AI	GATC	4 cut(s)	43, 249, 307, 606
Sau96I	GGNCC	2 cut(s)	225, 633
SchI	GAGTC	2 cut(s)	68, 629
ScrFI	CCNGG	5 cut(s)	223, 361, 434, 631, 637
SduI	GDGCHC	2 cut(s)	222, 828
SfuI	TTCGAA	1 cut(s)	14
SgrAI	CRCCGGYG	1 cut(s)	257
SinI	GGWCC	2 cut(s)	225, 633
SmiMI	CAYNNNNRTG	3 cut(s)	86, 131, 210
SmlI	CTYRAG	2 cut(s)	146, 459
SmoI	CTYRAG	2 cut(s)	146, 459
Sse9I	AATT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	668, 689, 710
StyD4I	CCNGG	5 cut(s)	221, 359, 432, 629, 635
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	3 cut(s)	229, 394, 661
TaiI	ACGT	3 cut(s)	344, 390, 802
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	37
TauI	GCSGC	9 cut(s)	52, 284, 287, 404, 445, 448, 513, 709, 754
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	1 cut(s)	747
Tru9I	TTAA	1 cut(s)	747
TscAI	CASTG	2 cut(s)	828, 833
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	8 cut(s)	118, 320, 323, 439, 586, 626, 685, 784
Tsp45I	GTSAC	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	2 cut(s)	828, 833
Tth111I	GACNNNGTC	1 cut(s)	236
VneI	GTGCAC	1 cut(s)	824
VpaK11BI	GGWCC	2 cut(s)	225, 633
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	3 cut(s)	668, 689, 710
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.