Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

12086568 .. 12087908

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0090800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAAAACGTCAAATTGAACTATAGTGACCCATTGTCAACTTTCGGCTATGGCAATTCTTTGTTGCTATTGGTTAGTCGTAAAATTGCTGGAAGGTTCAAGGACTACTACATTTTGCAGGCAGACATTACTCCTCATGTGCATGGCATATTGGTCAACTGGTTAATTGAAGTCAAAGAGTTGATTAGCATCTCAGCTGAGTCATACACTAGAGACCAGGTGCTTGGAATGGAGAGGCTCATTCTTAAAAAGTTGAATTTTCGTCTTAACACACCTACTCCATATGTCTTTATGTTGAGATTTCTTAAGGCTGCTCAGTCAGATACAAAGGAAGAAGACAATGAAGATGAGTTGATTGCCATGTTGGGCATGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

125

Amino Acids

14.47

Weight (kDa)

6.09

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	57 - 90	6.3e-06	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	256
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	19, 100, 170, 256
AhdI	GACNNNNNGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	298
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	22
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	218
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse1I	ACTGG	1 cut(s)	164
Bse8I	GATNNNNATC	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	218
BseJI	GATNNNNATC	1 cut(s)	188
BseMII	CTCAG	3 cut(s)	189, 207, 329
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	190, 206, 328
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	164
Bst2UI	CCWGG	1 cut(s)	218
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	193, 198, 315
BstMAI	GTCTC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	216
CviAII	CATG	4 cut(s)	137, 143, 361, 370
CviJI	RGCY	4 cut(s)	48, 197, 238, 311
CviKI_1	RGCY	4 cut(s)	48, 197, 238, 311
DdeI	CTNAG	3 cut(s)	193, 198, 315
DriI	GACNNNNNGTC	1 cut(s)	34
Eam1105I	GACNNNNNGTC	1 cut(s)	34
Eco31I	GGTCTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	4 cut(s)	140, 146, 364, 373
FatI	CATG	4 cut(s)	136, 142, 360, 369
FauNDI	CATATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	140, 146, 364, 373
HincII	GTYRAC	2 cut(s)	39, 157
HindII	GTYRAC	2 cut(s)	39, 157
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	39, 157
Hpy188I	TCNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	39, 157
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	3 cut(s)	4, 118, 142
HpyF3I	CTNAG	3 cut(s)	193, 198, 315
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	140, 146, 364, 373
LpnPI	CCDG	5 cut(s)	75, 104, 145, 203, 230
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	216
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	344, 347, 356
MluCI	AATT	5 cut(s)	14, 55, 84, 165, 256
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	144, 228
MseI	TTAA	4 cut(s)	164, 246, 267, 306
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	283
NlaIII	CATG	4 cut(s)	140, 146, 364, 373
NmuCI	GTSAC	1 cut(s)	26
NspI	RCATGY	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	164, 246, 267, 306
SatI	GCNGC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	12, 98, 199, 222, 277
SexAI	ACCWGGT	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	14, 55, 84, 165, 256
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	12
TasI	AATT	5 cut(s)	14, 55, 84, 165, 256
Tru1I	TTAA	4 cut(s)	164, 246, 267, 306
Tru9I	TTAA	4 cut(s)	164, 246, 267, 306
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	357
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.