Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

39040463 .. 39046608

Gene Structure 6146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGTCGTCGAAGCTGATCTCGTCGTCGTCAAATTCCCGCAACTCCGATCTCTCCCGACGCCCCTCCTCCAATTCCACAAAACCCAAACCACCCTCCTCCTCCTCCTCCGCCGCCGCCGCCAACCAAACCCTAAACACCACCACCGCCGGCGGCGGCTACATTAATCCCACGCCGGTCCAGCTCGGCTCGATGGCCGTCGACGGCCTCTTCTACAACAGCCTTACCACCTCGGAGCTCGAAGCGCAAATAAACCTGATCGACACCGCCGGCTTGGAAATCAACTCCGCCGCCAGCGTCAGCTCGTCGGCGCCGCCGCCGCCGAGGCCGAAGACTGTCGACGAGGTCTGGCAGGAGATTGTGTCCGGCGTGAGCCGGAAGGAGTGTAAAGAAGAGGTCCCCGATGAGTTGATGACTCTCGAGGACTTTCTGGCTCGGGCCGGCGCGGTGGAAGATAACGACATTAAGGATTTACACCTTGTGCCGCCGCCGCCGGAGACGGAGAGGTTGAGCGGAGGACTGAGCGGAGGGATGTTTGGGTTCGATCAGATCGCACTGAGCCCGTTCCAGTCGATTGAGAAGATTGAAAAGGGTGAGGGATCCATAGTTGGATTCGGAAATGGTGCTGAGGTGGCGGCGAGTGGAGGGGGGAGGGGGAGAGGGAAGAGAGCCAGGGCTGTTTTGGAGCCAATGGATAAGGCTGCACAGCAGAGGCAGAGGAGGATGATCAAGAATCGGGAGTCCGCGGCACGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCGATGGCGGTTAGATTAGAGGAGGAGAACGAGCGGCTTTTGAAAGAGAAGGTAATGAAAAATGCAGTTGCTCTTCAATTGTGTTATTTTGATATGTTCTCGTCTTGTACTTGTGAAATGTGCTTTCTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

308

Amino Acids

33.22

Weight (kDa)

5.42

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	235 - 280	2.7e-11	bZIP transcription factor
bZIP_2	PF07716	235 - 280	3.1e-09	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccBSI	CCGCTC	3 cut(s)	513, 525, 826
AccI	GTMKAC	2 cut(s)	201, 339
AccII	CGCG	2 cut(s)	446, 746
AclWI	GGATC	2 cut(s)	594, 607
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	34
AcyI	GRCGYC	3 cut(s)	5, 61, 311
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	1 cut(s)	901
AfiI	CCNNNNNNNGG	2 cut(s)	750, 762
AgsI	TTSAA	4 cut(s)	587, 785, 835, 869
AjnI	CCWGG	1 cut(s)	671
AluBI	AGCT	4 cut(s)	16, 184, 238, 303
AluI	AGCT	4 cut(s)	16, 184, 238, 303
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	594, 607
Ama87I	CYCGRG	2 cut(s)	419, 435
AoxI	GGCC	4 cut(s)	195, 205, 326, 438
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	247, 313, 446
AspS9I	GGNCC	4 cut(s)	178, 397, 438, 753
AsuHPI	GGTGA	1 cut(s)	605
AvaI	CYCGRG	2 cut(s)	419, 435
AvaII	GGWCC	3 cut(s)	178, 397, 753
BamHI	GGATCC	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	240, 563
BarI	GAAGNNNNNNTAC	2 cut(s)	758, 790
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	2 cut(s)	187, 790
BceAI	ACGGC	2 cut(s)	182, 220
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	1 cut(s)	491
BfoI	RGCGCY	1 cut(s)	314
BglI	GCCNNNNNGGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	3 cut(s)	178, 397, 753
BmeT110I	CYCGRG	2 cut(s)	419, 435
BmgT120I	GGNCC	4 cut(s)	178, 397, 438, 753
BmiI	GGNNCC	4 cut(s)	312, 399, 601, 687
BmrFI	CCNGG	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	338
Bpu10I	CCTNAGC	1 cut(s)	627
BsaHI	GRCGYC	3 cut(s)	5, 61, 311
BsaJI	CCNNGG	4 cut(s)	231, 323, 672, 744
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	750, 762
Bse118I	RCCGGY	4 cut(s)	149, 175, 269, 440
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	4 cut(s)	231, 323, 672, 744
BseGI	GGATG	2 cut(s)	537, 729
BseLI	CCNNNNNNNGG	2 cut(s)	750, 762
BseMII	CTCAG	3 cut(s)	512, 548, 618
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	8 cut(s)	58, 88, 91, 94, 97, 733, 827, 830
BseXI	GCAGC	1 cut(s)	688
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	446, 746
BshFI	GGCC	4 cut(s)	197, 207, 328, 440
BshNI	GGYRCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	419, 435
BsiSI	CCGG	7 cut(s)	150, 176, 270, 366, 376, 441, 494
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	750, 762
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	4 cut(s)	197, 207, 328, 440
BsoBI	CYCGRG	2 cut(s)	419, 435
Bsp1286I	GDGCHC	2 cut(s)	240, 563
Bsp143I	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
BspANI	GGCC	4 cut(s)	197, 207, 328, 440
BspCNI	CTCAG	3 cut(s)	513, 549, 619
BspFNI	CGCG	2 cut(s)	446, 746
BspLI	GGNNCC	4 cut(s)	312, 399, 601, 687
BspPI	GGATC	2 cut(s)	594, 607
BspQI	GCTCTTC	1 cut(s)	870
BspT107I	GGYRCC	1 cut(s)	310
BsrBI	CCGCTC	3 cut(s)	513, 525, 826
BsrFI	RCCGGY	4 cut(s)	149, 175, 269, 440
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	4 cut(s)	149, 175, 269, 440
BssECI	CCNNGG	4 cut(s)	231, 323, 672, 744
BssMI	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
BssNI	GRCGYC	3 cut(s)	5, 61, 311
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	2 cut(s)	337, 753
Bst6I	CTCTTC	4 cut(s)	215, 387, 659, 870
BstACI	GRCGYC	3 cut(s)	5, 61, 311
BstC8I	GCNNGC	5 cut(s)	151, 271, 295, 442, 771
BstDEI	CTNAG	3 cut(s)	521, 557, 627
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	537, 729
BstFNI	CGCG	2 cut(s)	446, 746
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	3 cut(s)	247, 313, 446
BstKTI	GATC	7 cut(s)	21, 52, 261, 547, 552, 602, 729
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
BstMWI	GCNNNNNNNGC	7 cut(s)	119, 181, 244, 319, 325, 490, 632
BstNI	CCWGG	1 cut(s)	673
BstSCI	CCNGG	1 cut(s)	671
BstUI	CGCG	2 cut(s)	446, 746
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	197, 207, 328, 440
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	537, 729
BtsIMutI	CAGTG	1 cut(s)	554
Cac8I	GCNNGC	5 cut(s)	151, 271, 295, 442, 771
CfoI	GCGC	3 cut(s)	247, 313, 446
Cfr10I	RCCGGY	4 cut(s)	149, 175, 269, 440
Cfr13I	GGNCC	4 cut(s)	178, 397, 438, 753
Cfr42I	CCGCGG	1 cut(s)	747
CseI	GACGC	2 cut(s)	69, 286
Csp6I	GTAC	1 cut(s)	900
CviQI	GTAC	1 cut(s)	900
DdeI	CTNAG	3 cut(s)	521, 557, 627
DinI	GGCGCC	1 cut(s)	312
DpnI	GATC	7 cut(s)	20, 51, 260, 546, 551, 601, 728
DpnII	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
DraIII	CACNNNGTG	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	4 cut(s)	215, 387, 659, 870
EarI	CTCTTC	4 cut(s)	215, 387, 659, 870
EciI	GGCGGA	2 cut(s)	100, 277
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	2 cut(s)	240, 563
Eco47I	GGWCC	3 cut(s)	178, 397, 753
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	2 cut(s)	419, 435
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	671
EcoT38I	GRGCYC	2 cut(s)	240, 563
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	491
FaiI	YATR	2 cut(s)	605, 887
FaqI	GGGAC	1 cut(s)	383
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	726
FblI	GTMKAC	2 cut(s)	201, 339
FokI	GGATG	2 cut(s)	544, 736
FriOI	GRGCYC	2 cut(s)	240, 563
GlaI	GCGC	3 cut(s)	246, 312, 445
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	197, 207, 328, 440
HapII	CCGG	7 cut(s)	150, 176, 270, 366, 376, 441, 494
HgaI	GACGC	2 cut(s)	69, 286
HhaI	GCGC	3 cut(s)	247, 313, 446
Hin1I	GRCGYC	3 cut(s)	5, 61, 311
Hin6I	GCGC	3 cut(s)	245, 311, 444
HinP1I	GCGC	3 cut(s)	245, 311, 444
HincII	GTYRAC	2 cut(s)	202, 340
HindII	GTYRAC	2 cut(s)	202, 340
HinfI	GANTC	5 cut(s)	415, 612, 733, 740, 791
HpaII	CCGG	7 cut(s)	150, 176, 270, 366, 376, 441, 494
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	2 cut(s)	202, 340
Hpy188I	TCNGA	4 cut(s)	49, 235, 549, 617
Hpy188III	TCNNGA	5 cut(s)	57, 419, 730, 737, 756
Hpy8I	GTNNAC	2 cut(s)	202, 340
Hpy99I	CGWCG	9 cut(s)	10, 13, 28, 31, 63, 203, 206, 310, 344
HpyAV	CCTTC	2 cut(s)	373, 835
HpyCH4III	ACNGT	2 cut(s)	337, 753
HpyCH4V	TGCA	2 cut(s)	704, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	119, 181, 244, 319, 325, 490, 632
HpyF3I	CTNAG	3 cut(s)	521, 557, 627
Hsp92I	GRCGYC	3 cut(s)	5, 61, 311
HspAI	GCGC	3 cut(s)	245, 311, 444
KasI	GGCGCC	1 cut(s)	310
KroI	GCCGGC	3 cut(s)	149, 269, 440
KroNI	GCCGGC	3 cut(s)	151, 271, 442
Ksp22I	TGATCA	1 cut(s)	726
KspI	CCGCGG	1 cut(s)	747
Kzo9I	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
LguI	GCTCTTC	1 cut(s)	870
LmnI	GCTCC	2 cut(s)	235, 685
Lsp1109I	GCAGC	1 cut(s)	688
MalI	GATC	7 cut(s)	20, 51, 260, 546, 551, 601, 728
MbiI	CCGCTC	3 cut(s)	513, 525, 826
MboI	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
MboII	GAAGA	7 cut(s)	202, 343, 404, 464, 592, 676, 857
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	2 cut(s)	240, 563
MluCI	AATT	4 cut(s)	34, 73, 785, 869
Mly113I	GGCGCC	1 cut(s)	311
MlyI	GAGTC	3 cut(s)	409, 749, 800
MmeI	TCCRAC	1 cut(s)	589
MreI	CGCCGGCG	1 cut(s)	149
MroNI	GCCGGC	3 cut(s)	149, 269, 440
MseI	TTAA	2 cut(s)	165, 465
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	7 cut(s)	150, 176, 270, 366, 376, 441, 494
MspR9I	CCNGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	673
MvnI	CGCG	2 cut(s)	446, 746
MwoI	GCNNNNNNNGC	7 cut(s)	119, 181, 244, 319, 325, 490, 632
NaeI	GCCGGC	3 cut(s)	151, 271, 442
NarI	GGCGCC	1 cut(s)	311
NdeII	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
NgoMIV	GCCGGC	3 cut(s)	149, 269, 440
NlaIV	GGNNCC	4 cut(s)	312, 399, 601, 687
NmeAIII	GCCGAG	2 cut(s)	165, 348
PaeR7I	CTCGAG	1 cut(s)	419
PciSI	GCTCTTC	1 cut(s)	870
PdiI	GCCGGC	3 cut(s)	151, 271, 442
PfeI	GAWTC	2 cut(s)	612, 733
PflFI	GACNNNGTC	1 cut(s)	344
PleI	GAGTC	3 cut(s)	409, 748, 799
PluTI	GGCGCC	1 cut(s)	314
PpsI	GAGTC	3 cut(s)	409, 748, 799
PpuMI	RGGWCCY	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	4 cut(s)	312, 399, 601, 687
PspPI	GGNCC	4 cut(s)	178, 397, 438, 753
PspPPI	RGGWCCY	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	599
PsyI	GACNNNGTC	1 cut(s)	344
RsaI	GTAC	1 cut(s)	901
RsaNI	GTAC	1 cut(s)	900
SacI	GAGCTC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	747
SalI	GTCGAC	2 cut(s)	200, 338
SapI	GCTCTTC	1 cut(s)	870
SaqAI	TTAA	2 cut(s)	165, 465
Sau3AI	GATC	7 cut(s)	18, 49, 258, 544, 549, 599, 726
Sau96I	GGNCC	4 cut(s)	178, 397, 438, 753
SchI	GAGTC	3 cut(s)	409, 749, 800
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	240, 563
SfoI	GGCGCC	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	419
Sfr303I	CCGCGG	1 cut(s)	747
SgrAI	CRCCGGYG	1 cut(s)	149
SgrBI	CCGCGG	1 cut(s)	747
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	3 cut(s)	178, 397, 753
SlaI	CTCGAG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	34, 73, 785, 869
SspDI	GGCGCC	1 cut(s)	310
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	337, 753
TasI	AATT	4 cut(s)	34, 73, 785, 869
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	2 cut(s)	612, 733
Tru1I	TTAA	2 cut(s)	165, 465
Tru9I	TTAA	2 cut(s)	165, 465
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	1 cut(s)	863
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	561
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	178, 397, 753
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	1 cut(s)	34
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XhoI	CTCGAG	1 cut(s)	419
XmiI	GTMKAC	2 cut(s)	201, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.