Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

4287325 .. 4291919

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1027000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTTCGTCGAAGCTAATGTCGTCGTCGTCGAGATCACAAAACTCGGATCTCTCCCGACGCCCTTCCAGTTTCTCCTCCGCTACAAAGCCCAAGCCCACCACCACCACACCACACCCGTCTTCCTCCTCTGCGCACCCCCAAACCCTAAGCAACTACCAGAACAGCATCGTTAACACGACGCCCTCGCTTCCAATCGGCTCCATGACCGCGGACGGCCTCCTCTACGACCCCACCTCCATGACGGACGCCACCCTCCTCGACACCCAAATAACCCTACTCGACGCCGCTGCAGATGTTAATGGATCATCAGCGCCGCCGCCCAAGACCGTCGACGAAGTTTGGCGGGAAATTGTGTCCGGCGAGAGTCGGAAGGAGTGTAAAGCGGAGGTTCCGGATGAGATGATGACACTGGAGGACTTTTTGGCTCGGGCCGGGGCCGTGGAAGAGAACGACATTAAGGATTTTCCGCTTGCGCCACCGCCGGAGATGGAGAGATTGAGCAGCGGAGTGTTTTCCTTCGATCAGATCCCGCTCAGCCCGTTCGGGTCGATTGATAAGGTCGAAGGGTCGATAGTTGGGTTTGGAAATGGGGCGGACCCTGCTGGGAGTGGAGGTGGGGTGGGGAGGGGGAAGAGAGGGCGCGCCGTTATGGAGCCGATGGATAAGGCGGCGCAGCAGAGACAGAAAAGAATGATCAAGAACCGGGAATCCGCGGCCAGGTCCAGAGAGAGAAAGCAGGCTTACCAAGTTGAATTGGAGTCATTGGCGGTCAGGTTAGAGGAGGAAAACGAGCAGCTTTTGAAAGAACAGGCGGATAGGACTCAGGCAAGACTTAAGCAGCTAATGGAAAACGTCATTCCGGTTGTGGAGAAGCGAAGACCACCTCGTGTGCTCCGAAGAGTTTGCTCATTGCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

308

Amino Acids

33.56

Weight (kDa)

6.26

Isoelectric Point (pI)

50.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_1	PF00170	225 - 271	3.4e-12	bZIP transcription factor
bZIP_2	PF07716	225 - 274	8.9e-10	Basic region leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	3 cut(s)	212, 645, 716
AccIII	TCCGGA	1 cut(s)	394
AclWI	GGATC	3 cut(s)	57, 313, 523
AcoI	YGGCCR	1 cut(s)	717
AcyI	GRCGYC	4 cut(s)	61, 182, 249, 285
AdeI	CACNNNGTG	1 cut(s)	890
AfiI	CCNNNNNNNGG	1 cut(s)	720
AflII	CTTAAG	1 cut(s)	836
AgsI	TTSAA	2 cut(s)	755, 805
AjnI	CCWGG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	695, 727
AluBI	AGCT	3 cut(s)	16, 799, 844
AluI	AGCT	3 cut(s)	16, 799, 844
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	3 cut(s)	57, 313, 523
Ama87I	CYCGRG	1 cut(s)	429
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	4 cut(s)	217, 432, 438, 717
ApeKI	GCWGC	5 cut(s)	290, 504, 676, 796, 841
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AscI	GGCGCGCC	1 cut(s)	643
AspLEI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
AspS9I	GGNCC	4 cut(s)	432, 438, 598, 723
AsuC2I	CCSGG	2 cut(s)	436, 707
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	598, 723
BauI	CACGAG	1 cut(s)	888
BbsI	GAAGAC	2 cut(s)	114, 886
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BccI	CCATC	2 cut(s)	484, 655
BceAI	ACGGC	3 cut(s)	232, 425, 632
BcgI	CGANNNNNNTGC	4 cut(s)	272, 306, 888, 922
BciT130I	CCWGG	1 cut(s)	721
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	436, 707
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	836
BlpI	GCTNAGC	1 cut(s)	536
Bme1390I	CCNGG	3 cut(s)	436, 707, 721
Bme18I	GGWCC	2 cut(s)	598, 723
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	4 cut(s)	432, 438, 598, 723
BmiI	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
BmrFI	CCNGG	3 cut(s)	436, 707, 721
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	114, 886
BpmI	CTGGAG	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	436, 707
BsaHI	GRCGYC	4 cut(s)	61, 182, 249, 285
BsaJI	CCNNGG	4 cut(s)	210, 435, 441, 714
BsaWI	WCCGGW	2 cut(s)	394, 862
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 601, 606, 631, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse1I	ACTGG	2 cut(s)	69, 417
Bse3DI	GCAATG	1 cut(s)	911
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	721
BseDI	CCNNGG	4 cut(s)	210, 435, 441, 714
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	2 cut(s)	550, 839
BseNI	ACTGG	2 cut(s)	69, 417
BsePI	GCGCGC	1 cut(s)	643
BseRI	GAGGAG	5 cut(s)	67, 118, 212, 248, 797
BseXI	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	3 cut(s)	212, 645, 716
BshFI	GGCC	4 cut(s)	219, 434, 440, 719
BsiHKAI	GWGCWC	1 cut(s)	897
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	676
BsnI	GGCC	4 cut(s)	219, 434, 440, 719
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	897
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
Bsp1720I	GCTNAGC	1 cut(s)	536
BspANI	GGCC	4 cut(s)	219, 434, 440, 719
BspCNI	CTCAG	2 cut(s)	549, 838
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	3 cut(s)	212, 645, 716
BspLI	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
BspMAI	CTGCAG	1 cut(s)	295
BspPI	GGATC	3 cut(s)	57, 313, 523
BspTI	CTTAAG	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	2 cut(s)	69, 417
BssECI	CCNNGG	4 cut(s)	210, 435, 441, 714
BssHII	GCGCGC	1 cut(s)	643
BssMI	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
BssNI	GRCGYC	4 cut(s)	61, 182, 249, 285
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	3 cut(s)	441, 629, 895
BstACI	GRCGYC	4 cut(s)	61, 182, 249, 285
BstAFI	CTTAAG	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	474, 645, 741
BstDEI	CTNAG	3 cut(s)	149, 536, 825
BstDSI	CCRYGG	3 cut(s)	210, 441, 714
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	3 cut(s)	212, 645, 716
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
BstKTI	GATC	6 cut(s)	38, 52, 308, 526, 531, 699
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	434, 705, 719
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	3 cut(s)	212, 645, 716
BstV1I	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BstV2I	GAAGAC	2 cut(s)	114, 886
BstX2I	RGATCY	2 cut(s)	49, 528
BstYI	RGATCY	2 cut(s)	49, 528
BsuRI	GGCC	4 cut(s)	219, 434, 440, 719
BtgI	CCRYGG	3 cut(s)	210, 441, 714
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	2 cut(s)	410, 923
Cac8I	GCNNGC	3 cut(s)	474, 645, 741
CfoI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
Cfr13I	GGNCC	4 cut(s)	432, 438, 598, 723
Cfr42I	CCGCGG	2 cut(s)	213, 717
CseI	GACGC	4 cut(s)	69, 190, 257, 293
CviAII	CATG	2 cut(s)	205, 241
DdeI	CTNAG	3 cut(s)	149, 536, 825
DpnI	GATC	6 cut(s)	37, 51, 307, 525, 530, 698
DpnII	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
DraIII	CACNNNGTG	1 cut(s)	890
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	3 cut(s)	441, 629, 895
EarI	CTCTTC	3 cut(s)	441, 629, 895
EciI	GGCGGA	2 cut(s)	611, 830
Eco47I	GGWCC	2 cut(s)	598, 723
Eco88I	CYCGRG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	719
FaeI	CATG	2 cut(s)	208, 244
FaiI	YATR	3 cut(s)	206, 242, 653
FatI	CATG	2 cut(s)	204, 240
FauI	CCCGC	2 cut(s)	339, 540
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	1 cut(s)	333
FokI	GGATG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	6 cut(s)	135, 315, 477, 644, 646, 675
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	4 cut(s)	219, 434, 440, 719
HapII	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
HgaI	GACGC	4 cut(s)	69, 190, 257, 293
HhaI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
Hin1I	GRCGYC	4 cut(s)	61, 182, 249, 285
Hin1II	CATG	2 cut(s)	208, 244
Hin6I	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
HinP1I	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
HincII	GTYRAC	2 cut(s)	175, 334
HindII	GTYRAC	2 cut(s)	175, 334
HinfI	GANTC	4 cut(s)	367, 710, 761, 823
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
Hpy166II	GTNNAC	2 cut(s)	175, 334
Hpy188I	TCNGA	4 cut(s)	49, 372, 528, 899
Hpy188III	TCNNGA	5 cut(s)	33, 57, 395, 700, 726
Hpy8I	GTNNAC	2 cut(s)	175, 334
Hpy99I	CGWCG	9 cut(s)	13, 28, 31, 34, 63, 184, 287, 335, 338
HpyAV	CCTTC	4 cut(s)	75, 367, 529, 560
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	2 cut(s)	293, 916
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	3 cut(s)	149, 536, 825
HpySE526I	ACGT	1 cut(s)	855
Hsp92I	GRCGYC	4 cut(s)	61, 182, 249, 285
Hsp92II	CATG	2 cut(s)	208, 244
HspAI	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
Kpn2I	TCCGGA	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	175
KspI	CCGCGG	2 cut(s)	213, 717
Kzo9I	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
LmnI	GCTCC	3 cut(s)	206, 655, 900
Lsp1109I	GCAGC	5 cut(s)	277, 516, 688, 808, 853
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	855
MalI	GATC	6 cut(s)	37, 51, 307, 525, 530, 698
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
MboII	GAAGA	5 cut(s)	114, 458, 646, 891, 912
MflI	RGATCY	2 cut(s)	49, 528
MhlI	GDGCHC	1 cut(s)	897
MluCI	AATT	2 cut(s)	351, 755
MlyI	GAGTC	3 cut(s)	376, 770, 817
MmeI	TCCRAC	1 cut(s)	350
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	4 cut(s)	174, 300, 459, 837
MslI	CAYNNNNRTG	2 cut(s)	239, 916
MspA1I	CMGCKG	4 cut(s)	212, 290, 507, 716
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
MspR9I	CCNGG	3 cut(s)	436, 707, 721
MvaI	CCWGG	1 cut(s)	721
MvnI	CGCG	3 cut(s)	212, 645, 716
MwoI	GCNNNNNNNGC	1 cut(s)	602
NciI	CCSGG	2 cut(s)	436, 707
NdeII	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
NlaIII	CATG	2 cut(s)	208, 244
NlaIV	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
NsbI	TGCGCA	1 cut(s)	135
PalAI	GGCGCGCC	1 cut(s)	643
PauI	GCGCGC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 895
PfeI	GAWTC	1 cut(s)	710
PleI	GAGTC	3 cut(s)	375, 769, 817
PpsI	GAGTC	3 cut(s)	375, 769, 817
Psp6I	CCWGG	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
PspPI	GGNCC	4 cut(s)	432, 438, 598, 723
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	49, 528
PteI	GCGCGC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	239, 916
SacII	CCGCGG	2 cut(s)	213, 717
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	174, 300, 459, 837
Sau3AI	GATC	6 cut(s)	35, 49, 305, 523, 528, 696
Sau96I	GGNCC	4 cut(s)	432, 438, 598, 723
SchI	GAGTC	3 cut(s)	376, 770, 817
ScrFI	CCNGG	3 cut(s)	436, 707, 721
SduI	GDGCHC	1 cut(s)	897
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	291
Sfr303I	CCGCGG	2 cut(s)	213, 717
SgrBI	CCGCGG	2 cut(s)	213, 717
SgrDI	CGTCGACG	1 cut(s)	332
SgsI	GGCGCGCC	1 cut(s)	643
SinI	GGWCC	2 cut(s)	598, 723
SmiMI	CAYNNNNRTG	2 cut(s)	239, 916
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	2 cut(s)	351, 755
StyD4I	CCNGG	3 cut(s)	434, 705, 719
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	9 cut(s)	11, 32, 261, 282, 333, 522, 551, 564, 572
TasI	AATT	2 cut(s)	351, 755
TauI	GCSGC	5 cut(s)	290, 319, 322, 674, 719
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	4 cut(s)	174, 300, 459, 837
Tru9I	TTAA	4 cut(s)	174, 300, 459, 837
TscAI	CASTG	2 cut(s)	417, 923
TseI	GCWGC	5 cut(s)	290, 504, 676, 796, 841
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	417, 923
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	2 cut(s)	598, 723
XmiI	GTMKAC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.