Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Reverse (-)

2222977 .. 2226620

Gene Structure 3644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01880.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCTTCGTCGAAGCTAATGTCGTCGTCGTCGACATCACAAAACTCGGATCTCTCCCGACGCCCTTCCACTTTCTCCTCCGCTACAGAGCCCAAGCCCACCACCACCACACCACACCCGTCTTCCTCCTCTGCGCACCCCCAAAACCTAAACAACTACCAGAACAGCATCGTTAACACGACGCCCTCGCTTCCAATCGGCTCCATGACCGCCGACGGCCTCCTCTACGACCCCACCCCCATGACCGACGCCACCCTCCTCGACACCCAAATAACCCTACTCGACGCCGCTGCAAATGTTAATGGACCATCAGCGCCGCCGCCCAAGACCGTCGACGAAGTTTGGCGGGAAATTGTGTCCGGCGAGAGTCGGAAGGAGTTTAAAGCGGAGGTTCCGGATGAGATGATGACACTGGAGGACTTTTTGGCTCGGGCCGGGGCCGTGGAAGAGAACGACATTAAGGATTTTCCGCTTGCGCCACCGCCGGAGATGGAGAGATTGAGCAGCGGAGTGTTTTCCTTCGATCAGATCCCGCTCAGCCCGTTCGGGTCGATTGATAAGGTCGAAGGGTCGATAGTTGGGTTTGGAAATGGGGTGGACCCTGCTGGGAGTGGAGGTAGGTTGGGGAGGGGGAAGAGAGGGCGCGCCGTCATGGAGCCGATGGATAAGGTGGCGCAGCAGAGACAGAAAAGAATGATCAAGAACCGGGAATCCGCGGCCAGGTCCAGAGAGAGAAAGCAGGCTTACCAAGTTGAATTGGAGTCATTGGCGGTCAGGTTAGAGGAGGAAAAAGAGCAGCTTTTGAAAGAACAGGCCGAGAGGACTCGGGCAAGACTTAAGCAGCTAATGGAAAACATCATTCCGGTTGTGGAGAAGCGAAGACCACCTCGTGTGCTCCGAAGAGTTCACTCATTGCAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

308

Amino Acids

33.89

Weight (kDa)

6.89

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	135
AccBSI	CCGCTC	1 cut(s)	535
AccI	GTMKAC	2 cut(s)	32, 333
AccII	CGCG	2 cut(s)	645, 716
AccIII	TCCGGA	1 cut(s)	394
AclWI	GGATC	2 cut(s)	57, 523
AcoI	YGGCCR	1 cut(s)	717
AcyI	GRCGYC	4 cut(s)	61, 182, 249, 285
AdeI	CACNNNGTG	1 cut(s)	890
AfiI	CCNNNNNNNGG	1 cut(s)	720
AflII	CTTAAG	1 cut(s)	836
AgsI	TTSAA	2 cut(s)	755, 805
AjnI	CCWGG	1 cut(s)	719
AloI	GAACNNNNNNTCC	2 cut(s)	695, 727
AluBI	AGCT	3 cut(s)	16, 799, 844
AluI	AGCT	3 cut(s)	16, 799, 844
Alw21I	GWGCWC	1 cut(s)	897
Alw26I	GTCTC	1 cut(s)	676
AlwI	GGATC	2 cut(s)	57, 523
Ama87I	CYCGRG	2 cut(s)	429, 825
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	5 cut(s)	217, 432, 438, 717, 813
ApeKI	GCWGC	5 cut(s)	290, 504, 676, 796, 841
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AscI	GGCGCGCC	1 cut(s)	643
AspLEI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
AspS9I	GGNCC	5 cut(s)	305, 432, 438, 598, 723
AsuC2I	CCSGG	2 cut(s)	436, 707
AvaI	CYCGRG	2 cut(s)	429, 825
AvaII	GGWCC	3 cut(s)	305, 598, 723
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	888
BbsI	GAAGAC	2 cut(s)	114, 886
Bbv12I	GWGCWC	1 cut(s)	897
BbvI	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BccI	CCATC	3 cut(s)	316, 484, 655
BceAI	ACGGC	3 cut(s)	232, 425, 632
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	721
BclI	TGATCA	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	436, 707
BcoDI	GTCTC	1 cut(s)	676
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	836
BisI	GCNGC	9 cut(s)	288, 291, 317, 320, 505, 677, 717, 797, 842
BlpI	GCTNAGC	1 cut(s)	536
BlsI	GCNGC	9 cut(s)	289, 292, 318, 321, 506, 678, 718, 798, 843
Bme1390I	CCNGG	3 cut(s)	436, 707, 721
Bme18I	GGWCC	3 cut(s)	305, 598, 723
BmeT110I	CYCGRG	2 cut(s)	429, 825
BmgT120I	GGNCC	5 cut(s)	305, 432, 438, 598, 723
BmiI	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
BmrFI	CCNGG	3 cut(s)	436, 707, 721
BmsI	GCATC	1 cut(s)	177
BpiI	GAAGAC	2 cut(s)	114, 886
BpmI	CTGGAG	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	536
BpuMI	CCSGG	2 cut(s)	436, 707
BsaHI	GRCGYC	4 cut(s)	61, 182, 249, 285
BsaJI	CCNNGG	3 cut(s)	435, 441, 714
BsaWI	WCCGGW	2 cut(s)	394, 862
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	720
Bse1I	ACTGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	911
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	721
BseDI	CCNNGG	3 cut(s)	435, 441, 714
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	720
BseMI	GCAATG	1 cut(s)	911
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	1 cut(s)	417
BsePI	GCGCGC	1 cut(s)	643
BseRI	GAGGAG	5 cut(s)	67, 118, 212, 248, 797
BseXI	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	2 cut(s)	645, 716
BshFI	GGCC	5 cut(s)	219, 434, 440, 719, 815
BsiHKAI	GWGCWC	1 cut(s)	897
BsiHKCI	CYCGRG	2 cut(s)	429, 825
BsiSI	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
BslI	CCNNNNNNNGG	1 cut(s)	720
BsmAI	GTCTC	1 cut(s)	676
BsnI	GGCC	5 cut(s)	219, 434, 440, 719, 815
BsoBI	CYCGRG	2 cut(s)	429, 825
Bsp1286I	GDGCHC	2 cut(s)	93, 897
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	49, 523, 528, 696
Bsp1720I	GCTNAGC	1 cut(s)	536
BspANI	GGCC	5 cut(s)	219, 434, 440, 719, 815
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	2 cut(s)	645, 716
BspLI	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
BspPI	GGATC	2 cut(s)	57, 523
BspTI	CTTAAG	1 cut(s)	836
BsrBI	CCGCTC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	911
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	3 cut(s)	435, 441, 714
BssHII	GCGCGC	1 cut(s)	643
BssMI	GATC	4 cut(s)	49, 523, 528, 696
BssNI	GRCGYC	4 cut(s)	61, 182, 249, 285
BssSI	CACGAG	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	3 cut(s)	441, 629, 895
BstACI	GRCGYC	4 cut(s)	61, 182, 249, 285
BstAFI	CTTAAG	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	474, 645, 741
BstDEI	CTNAG	1 cut(s)	536
BstDSI	CCRYGG	2 cut(s)	441, 714
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	2 cut(s)	645, 716
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
BstKTI	GATC	4 cut(s)	52, 526, 531, 699
BstMAI	GTCTC	1 cut(s)	676
BstMBI	GATC	4 cut(s)	49, 523, 528, 696
BstNI	CCWGG	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	434, 705, 719
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	2 cut(s)	645, 716
BstV1I	GCAGC	5 cut(s)	277, 516, 688, 808, 853
BstV2I	GAAGAC	2 cut(s)	114, 886
BstX2I	RGATCY	2 cut(s)	49, 528
BstYI	RGATCY	2 cut(s)	49, 528
BsuRI	GGCC	5 cut(s)	219, 434, 440, 719, 815
BtgI	CCRYGG	2 cut(s)	441, 714
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	923
BtsIMutI	CAGTG	2 cut(s)	410, 923
Cac8I	GCNNGC	3 cut(s)	474, 645, 741
CfoI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
Cfr13I	GGNCC	5 cut(s)	305, 432, 438, 598, 723
Cfr42I	CCGCGG	1 cut(s)	717
CseI	GACGC	4 cut(s)	69, 190, 257, 293
CviAII	CATG	3 cut(s)	205, 241, 652
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	4 cut(s)	51, 525, 530, 698
DpnII	GATC	4 cut(s)	49, 523, 528, 696
DraI	TTTAAA	1 cut(s)	382
DraIII	CACNNNGTG	1 cut(s)	890
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	3 cut(s)	441, 629, 895
EarI	CTCTTC	3 cut(s)	441, 629, 895
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	305, 598, 723
Eco88I	CYCGRG	2 cut(s)	429, 825
EcoRII	CCWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	3 cut(s)	208, 244, 655
FaiI	YATR	3 cut(s)	206, 242, 653
FalI	AAGNNNNNCTT	2 cut(s)	783, 815
FatI	CATG	3 cut(s)	204, 240, 651
FauI	CCCGC	2 cut(s)	339, 540
FbaI	TGATCA	1 cut(s)	696
FblI	GTMKAC	2 cut(s)	32, 333
Fnu4HI	GCNGC	9 cut(s)	288, 291, 317, 320, 505, 677, 717, 797, 842
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	9 cut(s)	288, 291, 317, 320, 505, 677, 717, 797, 842
FspI	TGCGCA	1 cut(s)	135
GlaI	GCGC	6 cut(s)	135, 315, 477, 644, 646, 675
GluI	GCNGC	9 cut(s)	288, 291, 317, 320, 505, 677, 717, 797, 842
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	434
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	5 cut(s)	219, 434, 440, 719, 815
HapII	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
HgaI	GACGC	4 cut(s)	69, 190, 257, 293
HhaI	GCGC	6 cut(s)	136, 316, 478, 645, 647, 676
Hin1I	GRCGYC	4 cut(s)	61, 182, 249, 285
Hin1II	CATG	3 cut(s)	208, 244, 655
Hin6I	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
HinP1I	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
HincII	GTYRAC	3 cut(s)	33, 175, 334
HindII	GTYRAC	3 cut(s)	33, 175, 334
HinfI	GANTC	4 cut(s)	367, 710, 761, 823
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
Hpy166II	GTNNAC	5 cut(s)	33, 175, 334, 598, 907
Hpy188I	TCNGA	4 cut(s)	49, 372, 528, 899
Hpy188III	TCNNGA	4 cut(s)	57, 395, 700, 726
Hpy8I	GTNNAC	5 cut(s)	33, 175, 334, 598, 907
HpyAV	CCTTC	4 cut(s)	75, 367, 529, 560
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	293, 916
HpyF3I	CTNAG	1 cut(s)	536
Hsp92I	GRCGYC	4 cut(s)	61, 182, 249, 285
Hsp92II	CATG	3 cut(s)	208, 244, 655
HspAI	GCGC	6 cut(s)	134, 314, 476, 643, 645, 674
Kpn2I	TCCGGA	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	696
KspAI	GTTAAC	1 cut(s)	175
KspI	CCGCGG	1 cut(s)	717
Kzo9I	GATC	4 cut(s)	49, 523, 528, 696
LmnI	GCTCC	3 cut(s)	206, 655, 900
Lsp1109I	GCAGC	5 cut(s)	277, 516, 688, 808, 853
LweI	GCATC	1 cut(s)	177
MalI	GATC	4 cut(s)	51, 525, 530, 698
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	4 cut(s)	49, 523, 528, 696
MboII	GAAGA	5 cut(s)	114, 458, 646, 891, 912
MflI	RGATCY	2 cut(s)	49, 528
MhlI	GDGCHC	2 cut(s)	93, 897
MluCI	AATT	2 cut(s)	351, 755
MlyI	GAGTC	3 cut(s)	376, 770, 817
MmeI	TCCRAC	1 cut(s)	350
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	5 cut(s)	174, 300, 381, 459, 837
MslI	CAYNNNNRTG	2 cut(s)	239, 916
MspA1I	CMGCKG	3 cut(s)	290, 507, 716
MspCI	CTTAAG	1 cut(s)	836
MspI	CCGG	6 cut(s)	360, 395, 435, 485, 706, 863
MspR9I	CCNGG	3 cut(s)	436, 707, 721
MvaI	CCWGG	1 cut(s)	721
MvnI	CGCG	2 cut(s)	645, 716
NciI	CCSGG	2 cut(s)	436, 707
NdeII	GATC	4 cut(s)	49, 523, 528, 696
NlaIII	CATG	3 cut(s)	208, 244, 655
NlaIV	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
NmeAIII	GCCGAG	1 cut(s)	841
NsbI	TGCGCA	1 cut(s)	135
PalAI	GGCGCGCC	1 cut(s)	643
PauI	GCGCGC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 895
PfeI	GAWTC	1 cut(s)	710
PkrI	GCNGC	9 cut(s)	289, 292, 318, 321, 506, 678, 718, 798, 843
PleI	GAGTC	3 cut(s)	375, 769, 817
PpsI	GAGTC	3 cut(s)	375, 769, 817
Psp6I	CCWGG	1 cut(s)	719
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	5 cut(s)	202, 393, 439, 600, 657
PspPI	GGNCC	5 cut(s)	305, 432, 438, 598, 723
PsuI	RGATCY	2 cut(s)	49, 528
PteI	GCGCGC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	239, 916
SacII	CCGCGG	1 cut(s)	717
SalI	GTCGAC	2 cut(s)	31, 332
SaqAI	TTAA	5 cut(s)	174, 300, 381, 459, 837
SatI	GCNGC	9 cut(s)	288, 291, 317, 320, 505, 677, 717, 797, 842
Sau3AI	GATC	4 cut(s)	49, 523, 528, 696
Sau96I	GGNCC	5 cut(s)	305, 432, 438, 598, 723
SchI	GAGTC	3 cut(s)	376, 770, 817
ScrFI	CCNGG	3 cut(s)	436, 707, 721
SduI	GDGCHC	2 cut(s)	93, 897
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	717
SgrBI	CCGCGG	1 cut(s)	717
SgrDI	CGTCGACG	1 cut(s)	332
SgsI	GGCGCGCC	1 cut(s)	643
SinI	GGWCC	3 cut(s)	305, 598, 723
SmiMI	CAYNNNNRTG	2 cut(s)	239, 916
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	2 cut(s)	351, 755
StyD4I	CCNGG	3 cut(s)	434, 705, 719
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	9 cut(s)	11, 32, 261, 282, 333, 522, 551, 564, 572
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	351, 755
TauI	GCSGC	4 cut(s)	290, 319, 322, 719
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	5 cut(s)	174, 300, 381, 459, 837
Tru9I	TTAA	5 cut(s)	174, 300, 381, 459, 837
TscAI	CASTG	2 cut(s)	417, 923
TseI	GCWGC	5 cut(s)	290, 504, 676, 796, 841
TspRI	CASTG	2 cut(s)	417, 923
Vha464I	CTTAAG	1 cut(s)	836
VpaK11BI	GGWCC	3 cut(s)	305, 598, 723
XmiI	GTMKAC	2 cut(s)	32, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.