Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001805

Physical Location & Seq

Genomic Coordinates Forward (+)

12084715 .. 12085292

Gene Structure 578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGGAAGCAACAAAGACGCCGGGAGTAGTGCTAACATACTTTGCAGGCGGAGCAAACCACAAGGCTTGGGATAAACAGAAGAAGAAGTTCACTTTGAATGTTCATGTGCCCATGCAAAGATCAAGGCTTGTTGGTAATGGTACCAATTGGACACCTGAGGATAAGTATATTAACTTCGGATCTTCTGCATCTGCTTTTGCTTCTTCAGCTGGTGTTGGTGGATCCATTAAGGAGATTGAAACCCTTCCACTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTACTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTCCGGATCTGTTGACTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009787 GO:0009789 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901421 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905959 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

138

Amino Acids

14.57

Weight (kDa)

6.28

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03970 AT5G44080
fragaria_vesca	FvH4_2g13640 FvH4_2g13640 FvH4_2g13640 FvH4_5g30210 FvH4_5g30210 FvH4_5g30210
malus_domestica	MD05G1027000.v1.1 MD08G1224700.v1.1 MD10G1026300.v1.1 MD15G1417900.v1.1
prunus_persica	Prupe.1G562000_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1 Prupe.8G031500_v2.0.a1
pyrus_communis	pycom05g01880 pycom08g19580 pycom10g01780 pycom13g04250
rosa_chinensis	RchiOBHm_Chr6g0275281 RchiOBHm_Chr7g0224461
rosa_laevigata	RLG00000001893 RLG00000013476
rosa_multiflora	Rmu_sc0003894.1_g000002 Rmu_sc0022303.1_g000003
rosa_roxburghii	Rroxscaffold_3G00234720 Rroxscaffold_7G00193440
rosa_rugosa	Rorug06G0090600 Rorug06G0090600 Rorug06G0090700 Rorug06G0090800 Rorug07G0223400 Rorug07G0223500 Rorug07G0223600
rosa_samantha	Rh6AG204300 Rh6BG207200 Rh6CG209700 Rh6DG200100 Rh7AG379800 Rh7BG359700 Rh7CG399300 Rh7DG369200
rosa_wichuraiana	Rw6G017740 Rw7G031190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	3 cut(s)	51, 315, 345
AclWI	GGATC	4 cut(s)	190, 219, 232, 406
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	100, 242
AluBI	AGCT	2 cut(s)	212, 379
AluI	AGCT	2 cut(s)	212, 379
Alw21I	GWGCWC	1 cut(s)	381
AlwI	GGATC	4 cut(s)	190, 219, 232, 406
Ama87I	CYCGRG	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	395
Asp700I	GAANNNNTTC	2 cut(s)	89, 246
Asp718I	GGTACC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	24
BisI	GCNGC	2 cut(s)	316, 346
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	2 cut(s)	317, 347
Bme1390I	CCNGG	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	145, 226
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	2 cut(s)	332, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	150, 394
BseRI	GAGGAG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	340
BsiSI	CCGG	3 cut(s)	23, 333, 396
BslI	CCNNNNNNNGG	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	114, 381
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	4 cut(s)	122, 182, 224, 398
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	3 cut(s)	51, 315, 345
BspCNI	CTCAG	2 cut(s)	151, 393
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	145, 226
BspPI	GGATC	4 cut(s)	190, 219, 232, 406
BspT107I	GGYRCC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	122, 182, 224, 398
BssNI	GRCGYC	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	255, 356
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	159, 380
BstKTI	GATC	4 cut(s)	125, 185, 227, 401
BstMBI	GATC	4 cut(s)	122, 182, 224, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 209, 321, 345
BstSCI	CCNGG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	114
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	3 cut(s)	182, 224, 398
BstYI	RGATCY	3 cut(s)	182, 224, 398
Bsu36I	CCTNAGG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	49
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	144
CspCI	CAANNNNNGTGG	2 cut(s)	50, 85
CviAII	CATG	5 cut(s)	107, 115, 262, 266, 289
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	2 cut(s)	159, 380
DpnI	GATC	4 cut(s)	124, 184, 226, 400
DpnII	GATC	4 cut(s)	122, 182, 224, 398
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	192
Eco81I	CCTNAGG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	381
FaeI	CATG	5 cut(s)	110, 118, 265, 269, 292
FaiI	YATR	8 cut(s)	40, 108, 116, 171, 263, 267, 290, 321
FatI	CATG	5 cut(s)	106, 114, 261, 265, 288
Fnu4HI	GCNGC	2 cut(s)	316, 346
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	2 cut(s)	316, 346
GluI	GCNGC	2 cut(s)	316, 346
HapII	CCGG	3 cut(s)	23, 333, 396
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	110, 118, 265, 269, 292
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HpaII	CCGG	3 cut(s)	23, 333, 396
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	2 cut(s)	93, 406
Hpy188I	TCNGA	2 cut(s)	182, 304
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	2 cut(s)	93, 406
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	255, 356
HpyCH4V	TGCA	4 cut(s)	47, 118, 191, 265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 209, 321, 345
HpyF3I	CTNAG	2 cut(s)	159, 380
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	5 cut(s)	110, 118, 265, 269, 292
Kpn2I	TCCGGA	1 cut(s)	395
KpnI	GGTACC	1 cut(s)	147
Kzo9I	GATC	4 cut(s)	122, 182, 224, 398
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	6 cut(s)	33, 36, 171, 198, 346, 409
LweI	GCATC	1 cut(s)	200
MalI	GATC	4 cut(s)	124, 184, 226, 400
MboI	GATC	4 cut(s)	122, 182, 224, 398
MboII	GAAGA	5 cut(s)	94, 97, 177, 198, 304
MfeI	CAATTG	1 cut(s)	148
MflI	RGATCY	3 cut(s)	182, 224, 398
MhlI	GDGCHC	2 cut(s)	114, 381
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	6 cut(s)	154, 265, 298, 302, 395, 403
Mph1103I	ATGCAT	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	2 cut(s)	89, 246
MseI	TTAA	3 cut(s)	174, 231, 415
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	3 cut(s)	23, 333, 396
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	4 cut(s)	53, 209, 321, 345
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	122, 182, 224, 398
NlaIII	CATG	5 cut(s)	110, 118, 265, 269, 292
NlaIV	GGNNCC	2 cut(s)	145, 226
NsiI	ATGCAT	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	89, 246
PkrI	GCNGC	2 cut(s)	317, 347
Psp124BI	GAGCTC	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	145, 226
PsuI	RGATCY	3 cut(s)	182, 224, 398
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	174, 231, 415
SatI	GCNGC	2 cut(s)	316, 346
Sau3AI	GATC	4 cut(s)	122, 182, 224, 398
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	114, 381
SetI	ASST	4 cut(s)	160, 214, 313, 381
SfaNI	GCATC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	3 cut(s)	51, 315, 345
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	2 cut(s)	255, 356
TasI	AATT	1 cut(s)	148
TauI	GCSGC	2 cut(s)	318, 348
Tru1I	TTAA	3 cut(s)	174, 231, 415
Tru9I	TTAA	3 cut(s)	174, 231, 415
TscAI	CASTG	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	95, 305
TspRI	CASTG	1 cut(s)	258
XmnI	GAANNNNTTC	2 cut(s)	89, 246
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.