AT1G04645

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001549
Physical Location & Seq
Reverse (-)
1293770 .. 1294263
494 bp
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UTR
Exon/CDS
Intron
AT1G04645.1

Sequence Viewer

Length: 387 bp
ATGGAAAAAGTTTCTATTGTTTGCTTCTTCTTCTTTCTTTTATTTGGTTCGGGTTATGGGGGCCTCCCACCGTTCTGGCGCGCTACGGTTGTCACGATGACAAACTTGATTGGCGGTCCACCTCTTACCATACATTGCAAATCCAAGCAAGACGATCTAGGAATTCACGTGGTGCCTTTCAAGCAAGAGTACCACTTCAAGTTTCAACCAAATCTTTGGAAATCAACATTGTTCTTTTGCAGTTTCCAATGGGACAGTCAATTCAAGTCGTTTGATATATATGATGCTCAGAGAGATCAAGGTATATGTGATGACTGTCAGTGGGAAATAAAACCTGATGGTCCATGCAGGCTCGGTAAAAAGGCGAAATGTTTTCCTTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

128

Amino Acids

14.9

Weight (kDa)

8.47

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 32 - 127 3.5e-29 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccII CGCG 1 cut(s) 81
AciI CCGC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 4 cut(s) 181, 199, 206, 265
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 81, 83
AspS9I GGNCC 3 cut(s) 61, 116, 341
AvaII GGWCC 2 cut(s) 116, 341
BanI GGYRCC 1 cut(s) 172
BbrPI CACGTG 1 cut(s) 169
BccI CCATC 1 cut(s) 332
BfaI CTAG 1 cut(s) 158
Bme18I GGWCC 2 cut(s) 116, 341
BmgT120I GGNCC 3 cut(s) 61, 116, 341
BmiI GGNNCC 2 cut(s) 62, 174
BmsI GCATC 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 302
BsePI GCGCGC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 172
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 154, 295
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 62, 174
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 377
BssHII GCGCGC 1 cut(s) 79
BssMI GATC 2 cut(s) 154, 295
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 72, 88, 257, 317
BstBAI YACGTR 1 cut(s) 169
BstC8I GCNNGC 2 cut(s) 81, 350
BstDEI CTNAG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 81
BstHHI GCGC 2 cut(s) 81, 83
BstKTI GATC 2 cut(s) 157, 298
BstMBI GATC 2 cut(s) 154, 295
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstUI CGCG 1 cut(s) 81
BstXI CCANNNNNNTGG 2 cut(s) 75, 216
BsuRI GGCC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 81, 350
CfoI GCGC 2 cut(s) 81, 83
Cfr13I GGNCC 3 cut(s) 61, 116, 341
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 345
CviJI RGCY 2 cut(s) 63, 352
CviKI_1 RGCY 2 cut(s) 63, 352
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 156, 297
DpnII GATC 2 cut(s) 154, 295
DraIII CACNNNGTG 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 116, 341
Eco72I CACGTG 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 1 cut(s) 348
FaiI YATR 8 cut(s) 57, 131, 278, 280, 282, 305, 307, 346
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 344
FspBI CTAG 1 cut(s) 158
GlaI GCGC 2 cut(s) 80, 82
HaeIII GGCC 1 cut(s) 63
HhaI GCGC 2 cut(s) 81, 83
Hin1II CATG 1 cut(s) 348
Hin6I GCGC 2 cut(s) 79, 81
HinP1I GCGC 2 cut(s) 79, 81
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 119
HpyCH4III ACNGT 4 cut(s) 72, 88, 257, 317
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 3 cut(s) 138, 240, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 288
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 348
HspAI GCGC 2 cut(s) 79, 81
Kzo9I GATC 2 cut(s) 154, 295
LpnPI CCDG 3 cut(s) 61, 334, 348
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 91
MalI GATC 2 cut(s) 156, 297
MboI GATC 2 cut(s) 154, 295
MboII GAAGA 2 cut(s) 19, 22
MluCI AATT 2 cut(s) 162, 260
MnlI CCTC 2 cut(s) 74, 132
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 2 cut(s) 154, 295
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 2 cut(s) 62, 174
NmuCI GTSAC 1 cut(s) 91
PauI GCGCGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 169
PmlI CACGTG 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 169
PspCI CACGTG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 62, 174
PspPI GGNCC 3 cut(s) 61, 116, 341
PteI GCGCGC 1 cut(s) 79
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 154, 295
Sau96I GGNCC 3 cut(s) 61, 116, 341
SetI ASST 4 cut(s) 124, 171, 304, 337
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 2 cut(s) 116, 341
Sse9I AATT 2 cut(s) 162, 260
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 158
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 4 cut(s) 72, 88, 257, 317
TaiI ACGT 1 cut(s) 171
TasI AATT 2 cut(s) 162, 260
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspRI CASTG 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 116, 341
XapI RAATTY 1 cut(s) 162
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.