Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

4471355 .. 4471762

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G062900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGCAAACGATAATATTGTTGGTTTTTGCACTCAGTATCACCACCATCTGTGAGGCTTATTCTTTTTTTGTTTCAACGGACGTAAAAATTATCAACGCTTTGGGCCCACAGACGGATCTGAACGTTCATTGTAGATCTAAGAATGATGATATAGGGTTGCACAATCTCCACCATGAAGACAACTTCCAGTTTCATTTCAGACCAAACTATTGGAGGAGCACCAAATTCTACTGCAGCTTCAAATGGTCCGACCAATTTCATTGGTTTGACATTTTCATACACAACAGGGACGATTGCAAGCATTGTACATGGATGATCAAATCCGGAGGGCCATGCAGGTACAATGATGAAACTGAAAGTTTCGACAAATGCTACCTTTGGAACGACAAGGGAGACTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

136

Amino Acids

16.12

Weight (kDa)

6.2

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	326
AclI	AACGTT	1 cut(s)	126
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	2 cut(s)	310, 344
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	78, 244
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	126
Aor13HI	TCCGGA	1 cut(s)	326
AoxI	GGCC	2 cut(s)	106, 332
ApaI	GGGCCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	227
AspS9I	GGNCC	4 cut(s)	106, 107, 249, 332
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	249
BccI	CCATC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	4 cut(s)	106, 107, 249, 332
BmiI	GGNNCC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	190
BseAI	TCCGGA	1 cut(s)	326
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	249
BshFI	GGCC	2 cut(s)	108, 334
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	108, 334
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	110, 224
Bsp13I	TCCGGA	1 cut(s)	326
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	118, 137, 318
BspANI	GGCC	2 cut(s)	108, 334
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	239
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	118, 137, 318
BstAUI	TGTACA	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	35, 141
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	3 cut(s)	121, 140, 321
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	118, 137, 318
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	249
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	118, 137
BstXI	CCANNNNNNTGG	1 cut(s)	213
BstYI	RGATCY	2 cut(s)	118, 137
BsuRI	GGCC	2 cut(s)	108, 334
BtsCI	GGATG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	302
Cfr13I	GGNCC	4 cut(s)	106, 107, 249, 332
Csp6I	GTAC	2 cut(s)	309, 343
CviAII	CATG	3 cut(s)	176, 312, 336
CviJI	RGCY	4 cut(s)	59, 108, 240, 334
CviKI_1	RGCY	4 cut(s)	59, 108, 240, 334
CviQI	GTAC	2 cut(s)	309, 343
DdeI	CTNAG	2 cut(s)	35, 141
DpnI	GATC	3 cut(s)	120, 139, 320
DpnII	GATC	3 cut(s)	118, 137, 318
Eco24I	GRGCYC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	3 cut(s)	179, 315, 339
FaiI	YATR	5 cut(s)	155, 177, 281, 313, 337
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	175, 311, 335
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	108, 334
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	3 cut(s)	179, 315, 339
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	123, 203, 253
Hpy188III	TCNNGA	1 cut(s)	327
HpyCH4IV	ACGT	2 cut(s)	84, 126
HpyCH4V	TGCA	5 cut(s)	32, 163, 237, 300, 339
HpyF3I	CTNAG	2 cut(s)	35, 141
HpySE526I	ACGT	2 cut(s)	84, 126
Hsp92II	CATG	3 cut(s)	179, 315, 339
Kpn2I	TCCGGA	1 cut(s)	326
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	118, 137, 318
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	4 cut(s)	203, 274, 325, 340
Lsp1109I	GCAGC	1 cut(s)	249
MaeII	ACGT	2 cut(s)	84, 126
MalI	GATC	3 cut(s)	120, 139, 320
MboI	GATC	3 cut(s)	118, 137, 318
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	2 cut(s)	118, 137
MhlI	GDGCHC	2 cut(s)	110, 224
MluCI	AATT	4 cut(s)	90, 227, 257, 403
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	49, 210, 323
MroI	TCCGGA	1 cut(s)	326
MspI	CCGG	1 cut(s)	327
NdeII	GATC	3 cut(s)	118, 137, 318
NlaIII	CATG	3 cut(s)	179, 315, 339
NlaIV	GGNNCC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	108
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	4 cut(s)	106, 107, 249, 332
PstI	CTGCAG	1 cut(s)	239
PsuI	RGATCY	2 cut(s)	118, 137
RsaI	GTAC	2 cut(s)	310, 344
RsaNI	GTAC	2 cut(s)	309, 343
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	118, 137, 318
Sau96I	GGNCC	4 cut(s)	106, 107, 249, 332
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	110, 224
SetI	ASST	5 cut(s)	87, 129, 242, 344, 381
SfcI	CTRYAG	1 cut(s)	235
SgeI	CNNG	9 cut(s)	188, 202, 301, 313, 324, 339, 348, 352, 403
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	4 cut(s)	90, 227, 257, 403
SspI	AATATT	1 cut(s)	18
TaiI	ACGT	2 cut(s)	87, 129
TaqI	TCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	90, 227, 257, 403
TatI	WGTACW	1 cut(s)	308
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	7 cut(s)	17, 119, 185, 192, 251, 268, 366
TspGWI	ACGGA	2 cut(s)	95, 131
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.