Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002312.1

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

253887 .. 255321

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002312.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgaatcagatattgatactattgttcatcctcttgctcactaagactgaggctgcttggaattccagacatgttgaaattatcaatgatttggatccaaaaacagatcttaccattcactgcaagtctaaggatgacgatctgggagtccatttgcttcgctttcaagagtccttttggatcaatttcaaactgaaaattctcggaggatccctggccatatcggcagtaaggctatcaaccttcttctcgagcttagcggcggtagtccagaagggtcgcagaagagctatctcagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

100

Amino Acids

11.29

Weight (kDa)

9.65

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	260, 263
AclWI	GGATC	5 cut(s)	89, 102, 188, 204, 217
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	61, 198
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	77, 167, 190
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	3 cut(s)	255, 290, 299
AluI	AGCT	3 cut(s)	255, 290, 299
AlwI	GGATC	5 cut(s)	89, 102, 188, 204, 217
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	61, 198
AvaI	CYCGRG	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	8, 41
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	2 cut(s)	94, 209
BbvI	GCAGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	54, 261
BlpI	GCTNAGC	1 cut(s)	256
BlsI	GCNGC	2 cut(s)	55, 262
Bme1390I	CCNGG	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	96, 211
BmrFI	CCNGG	1 cut(s)	215
Bpu1102I	GCTNAGC	1 cut(s)	256
BsaBI	GATNNNNATC	2 cut(s)	93, 138
BsaJI	CCNNGG	1 cut(s)	213
Bse8I	GATNNNNATC	2 cut(s)	93, 138
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	27, 139
BseJI	GATNNNNATC	2 cut(s)	93, 138
BseMII	CTCAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	250
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	250
Bsp143I	GATC	5 cut(s)	94, 106, 139, 180, 209
Bsp1720I	GCTNAGC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	260, 263
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	96, 211
BspPI	GGATC	5 cut(s)	89, 102, 188, 204, 217
BspQI	GCTCTTC	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	94, 106, 139, 180, 209
Bst2UI	CCWGG	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	280
BstDEI	CTNAG	5 cut(s)	42, 48, 129, 256, 295
BstF5I	GGATG	2 cut(s)	27, 139
BstKTI	GATC	5 cut(s)	97, 109, 142, 183, 212
BstMBI	GATC	5 cut(s)	94, 106, 139, 180, 209
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 296
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	3 cut(s)	94, 106, 209
BstYI	RGATCY	3 cut(s)	94, 106, 209
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	27, 139
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	53, 218, 235, 255, 290, 299
CviKI_1	RGCY	6 cut(s)	53, 218, 235, 255, 290, 299
DdeI	CTNAG	5 cut(s)	42, 48, 129, 256, 295
DpnI	GATC	5 cut(s)	96, 108, 141, 182, 211
DpnII	GATC	5 cut(s)	94, 106, 139, 180, 209
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco88I	CYCGRG	1 cut(s)	250
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	74
FaiI	YATR	2 cut(s)	72, 221
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	54, 261
FokI	GGATG	2 cut(s)	14, 146
Fsp4HI	GCNGC	2 cut(s)	54, 261
GluI	GCNGC	2 cut(s)	54, 261
HaeIII	GGCC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	3 cut(s)	4, 147, 170
Hpy188I	TCNGA	2 cut(s)	9, 206
Hpy188III	TCNNGA	4 cut(s)	66, 167, 250, 271
HpyAV	CCTTC	2 cut(s)	253, 268
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 296
HpyF3I	CTNAG	5 cut(s)	42, 48, 129, 256, 295
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	5 cut(s)	94, 106, 139, 180, 209
LguI	GCTCTTC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	79, 128, 200, 227, 284
Lsp1109I	GCAGC	1 cut(s)	40
MalI	GATC	5 cut(s)	96, 108, 141, 182, 211
MboI	GATC	5 cut(s)	94, 106, 139, 180, 209
MboII	GAAGA	2 cut(s)	238, 297
MflI	RGATCY	3 cut(s)	94, 106, 209
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	4 cut(s)	61, 78, 184, 198
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	156, 179
MnlI	CCTC	3 cut(s)	41, 43, 200
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	1 cut(s)	301
Msp20I	TGGCCA	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	224, 296
NdeII	GATC	5 cut(s)	94, 106, 139, 180, 209
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	2 cut(s)	96, 211
NspI	RCATGY	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	250
PciI	ACATGT	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	55, 262
PleI	GAGTC	2 cut(s)	155, 178
PpsI	GAGTC	2 cut(s)	155, 178
PscI	ACATGT	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	96, 211
PsuI	RGATCY	3 cut(s)	94, 106, 209
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	2 cut(s)	54, 261
Sau3AI	GATC	5 cut(s)	94, 106, 139, 180, 209
SchI	GAGTC	2 cut(s)	156, 179
ScrFI	CCNGG	1 cut(s)	215
SetI	ASST	4 cut(s)	245, 257, 292, 301
Sfr274I	CTCGAG	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	250
SmoI	CTYRAG	1 cut(s)	250
Sse9I	AATT	4 cut(s)	61, 78, 184, 198
SsiI	CCGC	2 cut(s)	260, 263
StyD4I	CCNGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	251
TasI	AATT	4 cut(s)	61, 78, 184, 198
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	16, 17
TspRI	CASTG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	61, 198
XceI	RCATGY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.