Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

2496782 .. 2497207

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCTTGCTTACCAGAAAGGCAACATTGTTGCTAATGGTGTTGGTGTTAACGTTCATATGTGAAGCTAAAATTACTGTTAGCATCAGTAACTTTTTGGCAGAGGAATATGAAGACGAAGTCAAGTTGGACCTCACTGTTCACTGTAAGTCCAAGGATGACGATCTCGGTCCCCATGTCCTCTCCTTCCTCGAAGGGTATGAGTTTCGGTTCAACCCCAACATTTGGCGGACAACGCTGTTTCACTGCACTATGGCATGGCCCTCTCATTTTCACCATTTCGTGATCTACGATCAATCAAGGGATGGAGGTTGTATACTAAACGACTCTCAGTGTATTTGGCGTGTAATAGAATCCGGTCCATGCAAATTAGAAACCTTGCCCAATAGGACAGAGATATGGGATTCTTATCCATGGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

141

Amino Acids

16.46

Weight (kDa)

5.24

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	27 - 129	1.3e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	316
AciI	CCGC	1 cut(s)	229
AclI	AACGTT	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AoxI	GGCC	2 cut(s)	3, 260
AspS9I	GGNCC	4 cut(s)	130, 170, 261, 359
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	3 cut(s)	130, 170, 359
BbsI	GAAGAC	1 cut(s)	120
BccI	CCATC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	424
Bme18I	GGWCC	3 cut(s)	130, 170, 359
BmgT120I	GGNCC	4 cut(s)	130, 170, 261, 359
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	120
BsaBI	GATNNNNATC	2 cut(s)	162, 408
BsaJI	CCNNGG	2 cut(s)	153, 413
BsaWI	WCCGGW	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse8I	GATNNNNATC	2 cut(s)	162, 408
BseDI	CCNNGG	2 cut(s)	153, 413
BseGI	GGATG	2 cut(s)	163, 310
BseJI	GATNNNNATC	2 cut(s)	162, 408
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	5, 262
BsiSI	CCGG	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	2 cut(s)	5, 262
Bsp143I	GATC	3 cut(s)	163, 285, 292
Bsp19I	CCATGG	1 cut(s)	413
BspACI	CCGC	1 cut(s)	229
BspANI	GGCC	2 cut(s)	5, 262
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	153, 413
BssMI	GATC	3 cut(s)	163, 285, 292
BssNAI	GTATAC	1 cut(s)	317
BssT1I	CCWWGG	2 cut(s)	153, 413
Bst1107I	GTATAC	1 cut(s)	317
Bst4CI	ACNGT	3 cut(s)	79, 139, 146
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	163, 310
BstKTI	GATC	3 cut(s)	166, 288, 295
BstMBI	GATC	3 cut(s)	163, 285, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	120
BstZ17I	GTATAC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	5, 262
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	163, 310
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	4 cut(s)	135, 142, 244, 338
Cfr13I	GGNCC	4 cut(s)	130, 170, 261, 359
CviAII	CATG	4 cut(s)	176, 258, 363, 414
CviJI	RGCY	3 cut(s)	5, 68, 262
CviKI_1	RGCY	3 cut(s)	5, 68, 262
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	165, 287, 294
DpnII	GATC	3 cut(s)	163, 285, 292
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	153, 413
Eco47I	GGWCC	3 cut(s)	130, 170, 359
EcoT14I	CCWWGG	2 cut(s)	153, 413
ErhI	CCWWGG	2 cut(s)	153, 413
FaeI	CATG	4 cut(s)	179, 261, 366, 417
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	4 cut(s)	175, 257, 362, 413
FauNDI	CATATG	1 cut(s)	59
FblI	GTMKAC	1 cut(s)	316
FokI	GGATG	2 cut(s)	170, 317
FspBI	CTAG	1 cut(s)	424
HaeIII	GGCC	2 cut(s)	5, 262
HapII	CCGG	1 cut(s)	357
Hin1II	CATG	4 cut(s)	179, 261, 366, 417
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	326, 353, 404
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	357
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	3 cut(s)	51, 142, 317
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	3 cut(s)	51, 142, 317
HpyAV	CCTTC	2 cut(s)	188, 196
HpyCH4III	ACNGT	3 cut(s)	79, 139, 146
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	249, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	179, 261, 366, 417
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	163, 285, 292
LpnPI	CCDG	2 cut(s)	28, 370
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	3 cut(s)	165, 287, 294
MboI	GATC	3 cut(s)	163, 285, 292
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	2 cut(s)	72, 368
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	6 cut(s)	97, 143, 191, 200, 274, 302
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	59
NdeII	GATC	3 cut(s)	163, 285, 292
NlaIII	CATG	4 cut(s)	179, 261, 366, 417
NlaIV	GGNNCC	1 cut(s)	172
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	353, 404
PflFI	GACNNNGTC	1 cut(s)	119
PflMI	CCANNNNNTGG	1 cut(s)	225
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp1406I	AACGTT	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	4 cut(s)	130, 170, 261, 359
PsyI	GACNNNGTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	163, 285, 292
Sau96I	GGNCC	4 cut(s)	130, 170, 261, 359
SchI	GAGTC	1 cut(s)	320
SetI	ASST	5 cut(s)	56, 70, 135, 313, 380
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	3 cut(s)	130, 170, 359
Sse9I	AATT	2 cut(s)	72, 368
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	424
StyI	CCWWGG	2 cut(s)	153, 413
TaaI	ACNGT	3 cut(s)	79, 139, 146
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	72, 368
TfiI	GAWTC	2 cut(s)	353, 404
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	4 cut(s)	142, 149, 251, 338
TspDTI	ATGAA	2 cut(s)	46, 126
TspRI	CASTG	4 cut(s)	142, 149, 251, 338
Tth111I	GACNNNGTC	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	3 cut(s)	130, 170, 359
XmiI	GTMKAC	1 cut(s)	316
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.