Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

41722378 .. 41722725

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG314500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCCGAAGCCAAAACACATGTTCGCATCACTAACGATTTACCAAACAACATGGACCTAACCGTTCATTGTAAATCCAGGGAAGACAACCTCGGCGCCCACGTACTCTCCTACCTCGACTCTTATGAATTTCGTTTCAATCCAAACATCGTGGGGTCAACTTTGTTTTACTGCTCTATGGCCTGGCCGTCACACACTCGCTATTTTAATATTTACAGTTTCAGAAGAGATGGCAGTTGTGAATGGAGCAAACATGTTTGTTTGTGGAGGGTAACACCAGAAGGTCCTTGCATAGTGAAGAACTTGAGTAATAACCAGACAGTTTGTTACAATTGGAAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

115

Amino Acids

13.52

Weight (kDa)

8.24

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	7 - 112	7.7e-28	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	105
AflIII	ACRYGT	2 cut(s)	19, 253
AgsI	TTSAA	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	77, 182
AoxI	GGCC	2 cut(s)	180, 185
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	55, 284
AvaII	GGWCC	2 cut(s)	55, 284
BanI	GGYRCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	79, 184
BfoI	RGCGCY	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	79, 184
Bme18I	GGWCC	2 cut(s)	55, 284
BmgT120I	GGNCC	2 cut(s)	55, 284
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	2 cut(s)	79, 184
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	325
BsaAI	YACGTR	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	78, 91
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
BseBI	CCWGG	2 cut(s)	79, 184
BseDI	CCNNGG	2 cut(s)	78, 91
BshFI	GGCC	2 cut(s)	182, 187
BshNI	GGYRCC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	182, 187
BspANI	GGCC	2 cut(s)	182, 187
BspLI	GGNNCC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	78, 91
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	79, 184
Bst4CI	ACNGT	3 cut(s)	64, 218, 322
Bst6I	CTCTTC	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	103
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	79, 184
BstNSI	RCATGY	2 cut(s)	23, 257
BstSCI	CCNGG	2 cut(s)	77, 182
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	182, 187
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	55, 284
Csp6I	GTAC	1 cut(s)	104
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	3 cut(s)	20, 52, 254
CviJI	RGCY	3 cut(s)	11, 182, 187
CviKI_1	RGCY	3 cut(s)	11, 182, 187
CviQI	GTAC	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	55, 284
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	77, 182
EgeI	GGCGCC	1 cut(s)	97
EheI	GGCGCC	1 cut(s)	97
FaeI	CATG	3 cut(s)	23, 55, 257
FaiI	YATR	6 cut(s)	21, 53, 126, 179, 255, 293
FatI	CATG	3 cut(s)	19, 51, 253
GlaI	GCGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	182, 187
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	3 cut(s)	23, 55, 257
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	7, 224
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	64, 218, 322
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	23, 55, 257
HspAI	GCGC	1 cut(s)	96
KasI	GGCGCC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	6 cut(s)	64, 91, 169, 196, 291, 329
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	189, 271, 326
MboII	GAAGA	3 cut(s)	95, 237, 310
MfeI	CAATTG	1 cut(s)	331
MluCI	AATT	2 cut(s)	128, 331
Mly113I	GGCGCC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	3 cut(s)	101, 125, 261
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	79, 184
MunI	CAATTG	1 cut(s)	331
MvaI	CCWGG	2 cut(s)	79, 184
NarI	GGCGCC	1 cut(s)	96
NlaIII	CATG	3 cut(s)	23, 55, 257
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	2 cut(s)	23, 257
PciI	ACATGT	2 cut(s)	19, 253
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PleI	GAGTC	1 cut(s)	113
PluTI	GGCGCC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	113
Ppu21I	YACGTR	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	284
PscI	ACATGT	2 cut(s)	19, 253
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	77, 182
PspGI	CCWGG	2 cut(s)	77, 182
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	55, 284
PspPPI	RGGWCCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	207
Sau96I	GGNCC	2 cut(s)	55, 284
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	79, 184
SetI	ASST	5 cut(s)	60, 93, 105, 117, 286
SfaNI	GCATC	1 cut(s)	36
SfoI	GGCGCC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	55, 284
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	128, 331
SspDI	GGCGCC	1 cut(s)	95
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	77, 182
TaaI	ACNGT	3 cut(s)	64, 218, 322
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	128, 331
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	56, 141
VpaK11BI	GGWCC	2 cut(s)	55, 284
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	2 cut(s)	23, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.