Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

68330615 .. 68331022

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG529900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCGCATTGTTTTCAAGACGTATTGTTCTTTTGAAAACGGTGTTGTTGTTAATGTTCCTAACCATGTTGAAAGCCAAAACACATGTTCGCATCATTAACAATTTACCGGACTACATGCAACTAAACATCCATTGTCAATCAGGGGACAATGATCTTGGCTTCTATGAACTCTCCAACCTCAGCTCTTTCGAATTTAGTTTCAACCCAAACTGGTTTGGGACGACTCGATTTTTTTGCTTCATGGCATGGCTCTCCAATGGTCACTATTTTGATATCTACGTGTACCGGAGAGATGGTACGTGTATATGGACAGAACACACATGTAAGTGGCACGTAACACCAAATGGTCCATGTAAGGAATTTAGCAATGGCACATCCCGGTGTTTTCCCTGGAATAATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

135

Amino Acids

15.9

Weight (kDa)

8.58

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	29 - 132	7.8e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	194, 362
AfaI	GTAC	2 cut(s)	287, 301
AflIII	ACRYGT	4 cut(s)	85, 282, 302, 323
AgsI	TTSAA	4 cut(s)	18, 37, 73, 205
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	186, 405
AluI	AGCT	2 cut(s)	186, 405
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	194, 362
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	350
BbvCI	CCTCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	382
BfaI	CTAG	1 cut(s)	406
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	382, 394
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmrFI	CCNGG	2 cut(s)	382, 394
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	382
BsaAI	YACGTR	3 cut(s)	283, 303, 337
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	2 cut(s)	109, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	129, 377
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	110, 289, 382
BslFI	GGGAC	2 cut(s)	161, 235
BsmFI	GGGAC	2 cut(s)	161, 235
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	195
BspT104I	TTCGAA	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	43
BstBAI	YACGTR	3 cut(s)	283, 303, 337
BstBI	TTCGAA	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	129, 377
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	3 cut(s)	89, 121, 327
BstSCI	CCNGG	2 cut(s)	380, 392
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	129, 377
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	286, 300
CviAII	CATG	7 cut(s)	67, 86, 118, 244, 249, 324, 354
CviJI	RGCY	6 cut(s)	5, 77, 162, 186, 253, 405
CviKI_1	RGCY	6 cut(s)	5, 77, 162, 186, 253, 405
CviQI	GTAC	2 cut(s)	286, 300
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	7 cut(s)	70, 89, 121, 247, 252, 327, 357
FaqI	GGGAC	2 cut(s)	161, 235
FatI	CATG	7 cut(s)	66, 85, 117, 243, 248, 323, 353
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	116, 364
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	406
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	110, 289, 382
Hin1II	CATG	7 cut(s)	70, 89, 121, 247, 252, 327, 357
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	110, 289, 382
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	4 cut(s)	22, 282, 302, 336
HpyCH4V	TGCA	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	4 cut(s)	22, 282, 302, 336
Hsp92II	CATG	7 cut(s)	70, 89, 121, 247, 252, 327, 357
Kzo9I	GATC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	123, 129, 199, 302, 379, 395
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	406
MaeII	ACGT	4 cut(s)	22, 282, 302, 336
MaeIII	GTNAC	2 cut(s)	263, 337
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MluCI	AATT	3 cut(s)	103, 194, 362
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	53, 99
MslI	CAYNNNNRTG	2 cut(s)	328, 382
MspI	CCGG	3 cut(s)	110, 289, 382
MspR9I	CCNGG	2 cut(s)	382, 394
MvaI	CCWGG	1 cut(s)	394
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	7 cut(s)	70, 89, 121, 247, 252, 327, 357
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	3 cut(s)	89, 121, 327
NspV	TTCGAA	1 cut(s)	192
PciI	ACATGT	2 cut(s)	85, 323
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Ppu21I	YACGTR	3 cut(s)	283, 303, 337
PscI	ACATGT	2 cut(s)	85, 323
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspPI	GGNCC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	287, 301
RsaNI	GTAC	2 cut(s)	286, 300
RseI	CAYNNNNRTG	2 cut(s)	328, 382
SaqAI	TTAA	2 cut(s)	53, 99
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	382, 394
SetI	ASST	7 cut(s)	25, 183, 188, 285, 305, 339, 407
SfaNI	GCATC	1 cut(s)	102
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	2 cut(s)	328, 382
Sse9I	AATT	3 cut(s)	103, 194, 362
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	380, 392
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	4 cut(s)	25, 285, 305, 339
TaqI	TCGA	2 cut(s)	192, 229
TasI	AATT	3 cut(s)	103, 194, 362
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	53, 99
Tru9I	TTAA	2 cut(s)	53, 99
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	183, 232
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	194, 362
XceI	RCATGY	3 cut(s)	89, 121, 327
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.