Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 6 - 193 | 4.5e-12 | Endonuclease/Exonuclease/phosphatase family |
| RVT_1 | PF00078 | 501 - 747 | 1.6e-25 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| zf-RVT | PF13966 | 1012 - 1103 | 3.6e-15 | zinc-binding in reverse transcriptase |
| RVT_3 | PF13456 | 1204 - 1326 | 6.6e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1557 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 459, 1362 |
| Acc36I | ACCTGC | 1 cut(s) | 3894 |
| AccB1I | GGYRCC | 2 cut(s) | 2030, 3320 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 794, 2817, 3593, 3964 |
| AccBSI | CCGCTC | 3 cut(s) | 568, 1034, 1973 |
| AccI | GTMKAC | 3 cut(s) | 2423, 2807, 3882 |
| AccII | CGCG | 1 cut(s) | 3891 |
| AccIII | TCCGGA | 1 cut(s) | 375 |
| AclWI | GGATC | 6 cut(s) | 867, 2286, 2349, 2819, 2832, 2956 |
| AcoI | YGGCCR | 3 cut(s) | 334, 1155, 3771 |
| AcsI | RAATTY | 5 cut(s) | 608, 783, 1452, 1468, 3518 |
| AcuI | CTGAAG | 2 cut(s) | 794, 1226 |
| AcyI | GRCGYC | 2 cut(s) | 712, 3121 |
| AdeI | CACNNNGTG | 1 cut(s) | 3251 |
| AfaI | GTAC | 7 cut(s) | 118, 583, 903, 1879, 2503, 3570, 3646 |
| AflII | CTTAAG | 1 cut(s) | 59 |
| AhdI | GACNNNNNGTC | 3 cut(s) | 1930, 3639, 3826 |
| AjnI | CCWGG | 8 cut(s) | 24, 47, 381, 596, 1351, 2229, 2902, 3816 |
| Alw21I | GWGCWC | 2 cut(s) | 2485, 3927 |
| Alw26I | GTCTC | 7 cut(s) | 101, 1001, 1267, 1370, 1917, 2205, 2754 |
| Alw44I | GTGCAC | 1 cut(s) | 2481 |
| AlwI | GGATC | 6 cut(s) | 867, 2286, 2349, 2819, 2832, 2956 |
| Ama87I | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| Aor13HI | TCCGGA | 1 cut(s) | 375 |
| ApaLI | GTGCAC | 1 cut(s) | 2481 |
| ApoI | RAATTY | 5 cut(s) | 608, 783, 1452, 1468, 3518 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 832, 864, 3608, 3640 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 935, 1311, 1595, 2937 |
| AspA2I | CCTAGG | 1 cut(s) | 1883 |
| AspLEI | GCGC | 5 cut(s) | 1351, 2105, 3891, 3893, 3970 |
| AsuC2I | CCSGG | 2 cut(s) | 406, 3544 |
| AsuHPI | GGTGA | 9 cut(s) | 446, 582, 1064, 1362, 1438, 1465, 2167, 2852, 3476 |
| AsuII | TTCGAA | 1 cut(s) | 1343 |
| AsuNHI | GCTAGC | 1 cut(s) | 1681 |
| AvaI | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| AvaII | GGWCC | 7 cut(s) | 45, 124, 373, 652, 676, 1355, 1825 |
| AvrII | CCTAGG | 1 cut(s) | 1883 |
| AxyI | CCTNAGG | 1 cut(s) | 2094 |
| BaeGI | GKGCMC | 4 cut(s) | 745, 910, 2035, 2485 |
| BalI | TGGCCA | 1 cut(s) | 3773 |
| BamHI | GGATCC | 1 cut(s) | 2824 |
| BanI | GGYRCC | 2 cut(s) | 2030, 3320 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4045, 4077 |
| BauI | CACGAG | 4 cut(s) | 621, 1257, 3285, 3918 |
| BbsI | GAAGAC | 1 cut(s) | 88 |
| Bbv12I | GWGCWC | 2 cut(s) | 2485, 3927 |
| BbvCI | CCTCAGC | 1 cut(s) | 101 |
| BceAI | ACGGC | 3 cut(s) | 129, 1112, 1170 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 464, 498 |
| BciT130I | CCWGG | 8 cut(s) | 26, 49, 383, 598, 1353, 2231, 2904, 3818 |
| BclI | TGATCA | 3 cut(s) | 627, 949, 3628 |
| BcnI | CCSGG | 2 cut(s) | 406, 3544 |
| BcoDI | GTCTC | 7 cut(s) | 101, 1001, 1267, 1370, 1917, 2205, 2754 |
| BfaI | CTAG | 9 cut(s) | 1029, 1682, 1884, 1995, 2714, 3063, 3729, 3936, 4035 |
| BfmI | CTRYAG | 3 cut(s) | 1297, 2162, 3354 |
| BfoI | RGCGCY | 1 cut(s) | 1352 |
| BfrI | CTTAAG | 1 cut(s) | 59 |
| BfuAI | ACCTGC | 1 cut(s) | 3894 |
| BlnI | CCTAGG | 1 cut(s) | 1883 |
| BlpI | GCTNAGC | 2 cut(s) | 2709, 3978 |
| Bme18I | GGWCC | 7 cut(s) | 45, 124, 373, 652, 676, 1355, 1825 |
| BmeRI | GACNNNNNGTC | 3 cut(s) | 1930, 3639, 3826 |
| BmeT110I | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| BmrI | ACTGGG | 2 cut(s) | 636, 3767 |
| BmsI | GCATC | 9 cut(s) | 139, 256, 462, 907, 1094, 1323, 1345, 3904, 4048 |
| BmtI | GCTAGC | 1 cut(s) | 1685 |
| BmuI | ACTGGG | 2 cut(s) | 636, 3767 |
| BpiI | GAAGAC | 1 cut(s) | 88 |
| BpmI | CTGGAG | 3 cut(s) | 549, 911, 2886 |
| Bpu10I | CCTNAGC | 3 cut(s) | 101, 2406, 3138 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 2709, 3978 |
| Bpu14I | TTCGAA | 1 cut(s) | 1343 |
| BpuEI | CTTGAG | 3 cut(s) | 494, 944, 3911 |
| BpuMI | CCSGG | 2 cut(s) | 406, 3544 |
| BsaAI | YACGTR | 2 cut(s) | 543, 2018 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1053, 3783 |
| BsaHI | GRCGYC | 2 cut(s) | 712, 3121 |
| BsaI | GGTCTC | 2 cut(s) | 1370, 1917 |
| BsaJI | CCNNGG | 9 cut(s) | 25, 382, 405, 1152, 1883, 1984, 2230, 2828, 2984 |
| BsaWI | WCCGGW | 2 cut(s) | 375, 1357 |
| Bse118I | RCCGGY | 3 cut(s) | 332, 592, 2375 |
| Bse1I | ACTGG | 8 cut(s) | 313, 642, 715, 918, 1770, 3031, 3566, 3762 |
| Bse21I | CCTNAGG | 1 cut(s) | 2094 |
| Bse3DI | GCAATG | 1 cut(s) | 1552 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1053, 3783 |
| BseAI | TCCGGA | 1 cut(s) | 375 |
| BseBI | CCWGG | 8 cut(s) | 26, 49, 383, 598, 1353, 2231, 2904, 3818 |
| BseDI | CCNNGG | 9 cut(s) | 25, 382, 405, 1152, 1883, 1984, 2230, 2828, 2984 |
| BseJI | GATNNNNATC | 2 cut(s) | 1053, 3783 |
| BseMI | GCAATG | 1 cut(s) | 1552 |
| BseNI | ACTGG | 8 cut(s) | 313, 642, 715, 918, 1770, 3031, 3566, 3762 |
| BsePI | GCGCGC | 1 cut(s) | 3889 |
| BseRI | GAGGAG | 5 cut(s) | 651, 785, 1608, 3261, 3381 |
| BseSI | GKGCMC | 4 cut(s) | 745, 910, 2035, 2485 |
| BseX3I | CGGCCG | 1 cut(s) | 1155 |
| BseYI | CCCAGC | 2 cut(s) | 757, 3865 |
| BsgI | GTGCAG | 3 cut(s) | 1977, 3036, 3785 |
| Bsh1236I | CGCG | 1 cut(s) | 3891 |
| Bsh1285I | CGRYCG | 4 cut(s) | 181, 194, 650, 1158 |
| BshNI | GGYRCC | 2 cut(s) | 2030, 3320 |
| BsiEI | CGRYCG | 4 cut(s) | 181, 194, 650, 1158 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2485, 3927 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| BsiSI | CCGG | 7 cut(s) | 333, 376, 405, 593, 1358, 2376, 3544 |
| BsiWI | CGTACG | 1 cut(s) | 3644 |
| BslFI | GGGAC | 7 cut(s) | 853, 1409, 1504, 1918, 3279, 3476, 3694 |
| BsmAI | GTCTC | 7 cut(s) | 101, 1001, 1267, 1370, 1917, 2205, 2754 |
| BsmBI | CGTCTC | 1 cut(s) | 1001 |
| BsmFI | GGGAC | 7 cut(s) | 853, 1409, 1504, 1918, 3279, 3476, 3694 |
| BsmI | GAATGC | 1 cut(s) | 1282 |
| Bso31I | GGTCTC | 2 cut(s) | 1370, 1917 |
| BsoBI | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| Bsp119I | TTCGAA | 1 cut(s) | 1343 |
| Bsp1286I | GDGCHC | 5 cut(s) | 745, 910, 2035, 2485, 3927 |
| Bsp13I | TCCGGA | 1 cut(s) | 375 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 2709, 3978 |
| BspEI | TCCGGA | 1 cut(s) | 375 |
| BspFNI | CGCG | 1 cut(s) | 3891 |
| BspHI | TCATGA | 1 cut(s) | 2992 |
| BspMI | ACCTGC | 1 cut(s) | 3894 |
| BspOI | GCTAGC | 1 cut(s) | 1685 |
| BspPI | GGATC | 6 cut(s) | 867, 2286, 2349, 2819, 2832, 2956 |
| BspQI | GCTCTTC | 1 cut(s) | 927 |
| BspT104I | TTCGAA | 1 cut(s) | 1343 |
| BspT107I | GGYRCC | 2 cut(s) | 2030, 3320 |
| BspTI | CTTAAG | 1 cut(s) | 59 |
| BspTNI | GGTCTC | 2 cut(s) | 1370, 1917 |
| BsrBI | CCGCTC | 3 cut(s) | 568, 1034, 1973 |
| BsrDI | GCAATG | 1 cut(s) | 1552 |
| BsrFI | RCCGGY | 3 cut(s) | 332, 592, 2375 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BsrI | ACTGG | 8 cut(s) | 313, 642, 715, 918, 1770, 3031, 3566, 3762 |
| BssAI | RCCGGY | 3 cut(s) | 332, 592, 2375 |
| BssECI | CCNNGG | 9 cut(s) | 25, 382, 405, 1152, 1883, 1984, 2230, 2828, 2984 |
| BssHII | GCGCGC | 1 cut(s) | 3889 |
| BssNAI | GTATAC | 1 cut(s) | 2424 |
| BssNI | GRCGYC | 2 cut(s) | 712, 3121 |
| BssSI | CACGAG | 4 cut(s) | 621, 1257, 3285, 3918 |
| BssT1I | CCWWGG | 1 cut(s) | 1883 |
| Bst1107I | GTATAC | 1 cut(s) | 2424 |
| Bst2BI | CACGAG | 4 cut(s) | 621, 1257, 3285, 3918 |
| Bst2UI | CCWGG | 8 cut(s) | 26, 49, 383, 598, 1353, 2231, 2904, 3818 |
| Bst6I | CTCTTC | 5 cut(s) | 723, 877, 927, 2162, 2976 |
| BstACI | GRCGYC | 2 cut(s) | 712, 3121 |
| BstAFI | CTTAAG | 1 cut(s) | 59 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3914 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstBAI | YACGTR | 2 cut(s) | 543, 2018 |
| BstBI | TTCGAA | 1 cut(s) | 1343 |
| BstDSI | CCRYGG | 3 cut(s) | 1152, 1984, 2828 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 671 |
| BstFNI | CGCG | 1 cut(s) | 3891 |
| BstH2I | RGCGCY | 1 cut(s) | 1352 |
| BstHHI | GCGC | 5 cut(s) | 1351, 2105, 3891, 3893, 3970 |
| BstMAI | GTCTC | 7 cut(s) | 101, 1001, 1267, 1370, 1917, 2205, 2754 |
| BstMCI | CGRYCG | 4 cut(s) | 181, 194, 650, 1158 |
| BstNI | CCWGG | 8 cut(s) | 26, 49, 383, 598, 1353, 2231, 2904, 3818 |
| BstNSI | RCATGY | 3 cut(s) | 56, 1696, 3737 |
| BstSFI | CTRYAG | 3 cut(s) | 1297, 2162, 3354 |
| BstSLI | GKGCMC | 4 cut(s) | 745, 910, 2035, 2485 |
| BstSNI | TACGTA | 1 cut(s) | 2018 |
| BstUI | CGCG | 1 cut(s) | 3891 |
| BstV2I | GAAGAC | 1 cut(s) | 88 |
| BstX2I | RGATCY | 4 cut(s) | 2291, 2354, 2824, 2961 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1288, 2910, 3952 |
| BstYI | RGATCY | 4 cut(s) | 2291, 2354, 2824, 2961 |
| BstZ17I | GTATAC | 1 cut(s) | 2424 |
| BstZI | CGGCCG | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2094 |
| BtgI | CCRYGG | 3 cut(s) | 1152, 1984, 2828 |
| BtgZI | GCGATG | 1 cut(s) | 65 |
| BtsI | GCAGTG | 1 cut(s) | 3157 |
| BtsIMutI | CAGTG | 5 cut(s) | 112, 2191, 2417, 3157, 3351 |
| BveI | ACCTGC | 1 cut(s) | 3894 |
| CciI | TCATGA | 1 cut(s) | 2992 |
| CfoI | GCGC | 5 cut(s) | 1351, 2105, 3891, 3893, 3970 |
| Cfr10I | RCCGGY | 3 cut(s) | 332, 592, 2375 |
| CseI | GACGC | 4 cut(s) | 720, 1662, 3110, 3626 |
| Csp6I | GTAC | 7 cut(s) | 117, 582, 902, 1878, 2502, 3569, 3645 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1200, 1235, 2459, 2494 |
| CviQI | GTAC | 7 cut(s) | 117, 582, 902, 1878, 2502, 3569, 3645 |
| DraI | TTTAAA | 1 cut(s) | 2671 |
| DraIII | CACNNNGTG | 1 cut(s) | 3251 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 459, 1362 |
| DriI | GACNNNNNGTC | 3 cut(s) | 1930, 3639, 3826 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 459, 1362 |
| EaeI | YGGCCR | 3 cut(s) | 334, 1155, 3771 |
| EagI | CGGCCG | 1 cut(s) | 1155 |
| Eam1104I | CTCTTC | 5 cut(s) | 723, 877, 927, 2162, 2976 |
| Eam1105I | GACNNNNNGTC | 3 cut(s) | 1930, 3639, 3826 |
| EarI | CTCTTC | 5 cut(s) | 723, 877, 927, 2162, 2976 |
| EclXI | CGGCCG | 1 cut(s) | 1155 |
| Eco105I | TACGTA | 1 cut(s) | 2018 |
| Eco130I | CCWWGG | 1 cut(s) | 1883 |
| Eco147I | AGGCCT | 1 cut(s) | 1119 |
| Eco31I | GGTCTC | 2 cut(s) | 1370, 1917 |
| Eco32I | GATATC | 3 cut(s) | 603, 1129, 1744 |
| Eco47I | GGWCC | 7 cut(s) | 45, 124, 373, 652, 676, 1355, 1825 |
| Eco52I | CGGCCG | 1 cut(s) | 1155 |
| Eco57I | CTGAAG | 2 cut(s) | 794, 1226 |
| Eco81I | CCTNAGG | 1 cut(s) | 2094 |
| Eco88I | CYCGRG | 3 cut(s) | 2863, 2985, 3198 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 671 |
| EcoO109I | RGGNCCY | 3 cut(s) | 199, 1963, 2139 |
| EcoRI | GAATTC | 1 cut(s) | 783 |
| EcoRII | CCWGG | 8 cut(s) | 24, 47, 381, 596, 1351, 2229, 2902, 3816 |
| EcoRV | GATATC | 3 cut(s) | 603, 1129, 1744 |
| EcoT14I | CCWWGG | 1 cut(s) | 1883 |
| EcoT22I | ATGCAT | 2 cut(s) | 1338, 2526 |
| ErhI | CCWWGG | 1 cut(s) | 1883 |
| Esp3I | CGTCTC | 1 cut(s) | 1001 |
| FaqI | GGGAC | 7 cut(s) | 853, 1409, 1504, 1918, 3279, 3476, 3694 |
| FauI | CCCGC | 3 cut(s) | 2523, 2767, 2814 |
| FauNDI | CATATG | 1 cut(s) | 790 |
| FbaI | TGATCA | 3 cut(s) | 627, 949, 3628 |
| FblI | GTMKAC | 3 cut(s) | 2423, 2807, 3882 |
| FspBI | CTAG | 9 cut(s) | 1029, 1682, 1884, 1995, 2714, 3063, 3729, 3936, 4035 |
| GlaI | GCGC | 5 cut(s) | 1350, 2104, 3890, 3892, 3969 |
| GsaI | CCCAGC | 2 cut(s) | 761, 3869 |
| GsuI | CTGGAG | 3 cut(s) | 549, 911, 2886 |
| HaeII | RGCGCY | 1 cut(s) | 1352 |
| HapII | CCGG | 7 cut(s) | 333, 376, 405, 593, 1358, 2376, 3544 |
| HgaI | GACGC | 4 cut(s) | 720, 1662, 3110, 3626 |
| HhaI | GCGC | 5 cut(s) | 1351, 2105, 3891, 3893, 3970 |
| Hin1I | GRCGYC | 2 cut(s) | 712, 3121 |
| Hin6I | GCGC | 5 cut(s) | 1349, 2103, 3889, 3891, 3968 |
| HinP1I | GCGC | 5 cut(s) | 1349, 2103, 3889, 3891, 3968 |
| HincII | GTYRAC | 3 cut(s) | 1440, 2663, 3616 |
| HindII | GTYRAC | 3 cut(s) | 1440, 2663, 3616 |
| HindIII | AAGCTT | 1 cut(s) | 1752 |
| HpaI | GTTAAC | 1 cut(s) | 1440 |
| HpaII | CCGG | 7 cut(s) | 333, 376, 405, 593, 1358, 2376, 3544 |
| HphI | GGTGA | 9 cut(s) | 446, 582, 1064, 1362, 1438, 1465, 2167, 2852, 3476 |
| Hpy99I | CGWCG | 1 cut(s) | 714 |
| HpyAV | CCTTC | 5 cut(s) | 36, 149, 890, 1350, 3357 |
| HpyCH4IV | ACGT | 6 cut(s) | 340, 542, 1010, 2017, 2785, 3217 |
| HpySE526I | ACGT | 6 cut(s) | 340, 542, 1010, 2017, 2785, 3217 |
| Hsp92I | GRCGYC | 2 cut(s) | 712, 3121 |
| HspAI | GCGC | 5 cut(s) | 1349, 2103, 3889, 3891, 3968 |
| Kpn2I | TCCGGA | 1 cut(s) | 375 |
| Ksp22I | TGATCA | 3 cut(s) | 627, 949, 3628 |
| KspAI | GTTAAC | 1 cut(s) | 1440 |
| LguI | GCTCTTC | 1 cut(s) | 927 |
| LmnI | GCTCC | 7 cut(s) | 187, 286, 685, 799, 1208, 1297, 3862 |
| LweI | GCATC | 9 cut(s) | 139, 256, 462, 907, 1094, 1323, 1345, 3904, 4048 |
| MaeI | CTAG | 9 cut(s) | 1029, 1682, 1884, 1995, 2714, 3063, 3729, 3936, 4035 |
| MaeII | ACGT | 6 cut(s) | 340, 542, 1010, 2017, 2785, 3217 |
| MbiI | CCGCTC | 3 cut(s) | 568, 1034, 1973 |
| MfeI | CAATTG | 2 cut(s) | 1248, 3714 |
| MflI | RGATCY | 4 cut(s) | 2291, 2354, 2824, 2961 |
| MhlI | GDGCHC | 5 cut(s) | 745, 910, 2035, 2485, 3927 |
| MlsI | TGGCCA | 1 cut(s) | 3773 |
| MluNI | TGGCCA | 1 cut(s) | 3773 |
| MlyI | GAGTC | 7 cut(s) | 103, 475, 835, 1157, 2642, 2875, 3815 |
| MmeI | TCCRAC | 6 cut(s) | 630, 651, 1158, 2330, 2605, 3789 |
| Mox20I | TGGCCA | 1 cut(s) | 3773 |
| Mph1103I | ATGCAT | 2 cut(s) | 1338, 2526 |
| MroI | TCCGGA | 1 cut(s) | 375 |
| MroXI | GAANNNNTTC | 4 cut(s) | 935, 1311, 1595, 2937 |
| MscI | TGGCCA | 1 cut(s) | 3773 |
| Msp20I | TGGCCA | 1 cut(s) | 3773 |
| MspA1I | CMGCKG | 4 cut(s) | 691, 814, 3127, 3593 |
| MspCI | CTTAAG | 1 cut(s) | 59 |
| MspI | CCGG | 7 cut(s) | 333, 376, 405, 593, 1358, 2376, 3544 |
| MunI | CAATTG | 2 cut(s) | 1248, 3714 |
| Mva1269I | GAATGC | 1 cut(s) | 1282 |
| MvaI | CCWGG | 8 cut(s) | 26, 49, 383, 598, 1353, 2231, 2904, 3818 |
| MvnI | CGCG | 1 cut(s) | 3891 |
| NciI | CCSGG | 2 cut(s) | 406, 3544 |
| NdeI | CATATG | 1 cut(s) | 790 |
| NheI | GCTAGC | 1 cut(s) | 1681 |
| NmeAIII | GCCGAG | 2 cut(s) | 2783, 3763 |
| NmuCI | GTSAC | 4 cut(s) | 1894, 2786, 3251, 3287 |
| NsiI | ATGCAT | 2 cut(s) | 1338, 2526 |
| NspI | RCATGY | 3 cut(s) | 56, 1696, 3737 |
| NspV | TTCGAA | 1 cut(s) | 1343 |
| PaeI | GCATGC | 1 cut(s) | 56 |
| PaeR7I | CTCGAG | 1 cut(s) | 2863 |
| PagI | TCATGA | 1 cut(s) | 2992 |
| PauI | GCGCGC | 1 cut(s) | 3889 |
| PceI | AGGCCT | 1 cut(s) | 1119 |
| PciSI | GCTCTTC | 1 cut(s) | 927 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 187, 718, 1063 |
| PctI | GAATGC | 1 cut(s) | 1282 |
| PdmI | GAANNNNTTC | 4 cut(s) | 935, 1311, 1595, 2937 |
| PfeI | GAWTC | 9 cut(s) | 221, 551, 1788, 2272, 2452, 2945, 3073, 3100, 3313 |
| Pfl23II | CGTACG | 1 cut(s) | 3644 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 794, 2817, 3593, 3964 |
| Ple19I | CGATCG | 2 cut(s) | 181, 194 |
| PleI | GAGTC | 7 cut(s) | 103, 474, 835, 1156, 2642, 2874, 3814 |
| PpsI | GAGTC | 7 cut(s) | 103, 474, 835, 1156, 2642, 2874, 3814 |
| Ppu21I | YACGTR | 2 cut(s) | 543, 2018 |
| PsiI | TTATAA | 1 cut(s) | 1557 |
| Psp6I | CCWGG | 8 cut(s) | 24, 47, 381, 596, 1351, 2229, 2902, 3816 |
| PspFI | CCCAGC | 2 cut(s) | 757, 3865 |
| PspGI | CCWGG | 8 cut(s) | 24, 47, 381, 596, 1351, 2229, 2902, 3816 |
| PspLI | CGTACG | 1 cut(s) | 3644 |
| PspXI | VCTCGAGB | 1 cut(s) | 2863 |
| PsuI | RGATCY | 4 cut(s) | 2291, 2354, 2824, 2961 |
| PteI | GCGCGC | 1 cut(s) | 3889 |
| PvuI | CGATCG | 2 cut(s) | 181, 194 |
| PvuII | CAGCTG | 4 cut(s) | 691, 814, 3127, 3593 |
| RsaI | GTAC | 7 cut(s) | 118, 583, 903, 1879, 2503, 3570, 3646 |
| RsaNI | GTAC | 7 cut(s) | 117, 582, 902, 1878, 2502, 3569, 3645 |
| SapI | GCTCTTC | 1 cut(s) | 927 |
| SchI | GAGTC | 7 cut(s) | 103, 475, 835, 1157, 2642, 2875, 3815 |
| SduI | GDGCHC | 5 cut(s) | 745, 910, 2035, 2485, 3927 |
| SfaNI | GCATC | 9 cut(s) | 139, 256, 462, 907, 1094, 1323, 1345, 3904, 4048 |
| SfcI | CTRYAG | 3 cut(s) | 1297, 2162, 3354 |
| Sfr274I | CTCGAG | 1 cut(s) | 2863 |
| SfuI | TTCGAA | 1 cut(s) | 1343 |
| SinI | GGWCC | 7 cut(s) | 45, 124, 373, 652, 676, 1355, 1825 |
| SlaI | CTCGAG | 1 cut(s) | 2863 |
| SmlI | CTYRAG | 5 cut(s) | 59, 509, 959, 2863, 3926 |
| SmoI | CTYRAG | 5 cut(s) | 59, 509, 959, 2863, 3926 |
| SnaBI | TACGTA | 1 cut(s) | 2018 |
| SphI | GCATGC | 1 cut(s) | 56 |
| SseBI | AGGCCT | 1 cut(s) | 1119 |
| SspI | AATATT | 3 cut(s) | 7, 1391, 2128 |
| SspMI | CTAG | 9 cut(s) | 1029, 1682, 1884, 1995, 2714, 3063, 3729, 3936, 4035 |
| StuI | AGGCCT | 1 cut(s) | 1119 |
| StyI | CCWWGG | 1 cut(s) | 1883 |
| TaiI | ACGT | 6 cut(s) | 343, 545, 1013, 2020, 2788, 3220 |
| TaqII | GACCGA | 2 cut(s) | 636, 2648 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TauI | GCSGC | 1 cut(s) | 822 |
| TfiI | GAWTC | 9 cut(s) | 221, 551, 1788, 2272, 2452, 2945, 3073, 3100, 3313 |
| TscAI | CASTG | 5 cut(s) | 119, 2191, 2424, 3157, 3358 |
| TseFI | GTSAC | 4 cut(s) | 1894, 2786, 3251, 3287 |
| Tsp45I | GTSAC | 4 cut(s) | 1894, 2786, 3251, 3287 |
| TspGWI | ACGGA | 6 cut(s) | 710, 863, 2001, 2519, 2817, 4011 |
| TspRI | CASTG | 5 cut(s) | 119, 2191, 2424, 3157, 3358 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 794, 2817, 3593, 3964 |
| Vha464I | CTTAAG | 1 cut(s) | 59 |
| VneI | GTGCAC | 1 cut(s) | 2481 |
| VpaK11BI | GGWCC | 7 cut(s) | 45, 124, 373, 652, 676, 1355, 1825 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 671 |
| XapI | RAATTY | 5 cut(s) | 608, 783, 1452, 1468, 3518 |
| XbaI | TCTAGA | 1 cut(s) | 1028 |
| XceI | RCATGY | 3 cut(s) | 56, 1696, 3737 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2733, 3573 |
| XhoI | CTCGAG | 1 cut(s) | 2863 |
| XmaJI | CCTAGG | 1 cut(s) | 1883 |
| XmiI | GTMKAC | 3 cut(s) | 2423, 2807, 3882 |
| XmnI | GAANNNNTTC | 4 cut(s) | 935, 1311, 1595, 2937 |
| XspI | CTAG | 9 cut(s) | 1029, 1682, 1884, 1995, 2714, 3063, 3729, 3936, 4035 |
| Zsp2I | ATGCAT | 2 cut(s) | 1338, 2526 |