Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

22366471 .. 22366896

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1228400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATGAGCCATCTCAGAAGGTATCTCTTCCTGCAACAGCTCCAGCTCCTTGTCCTCCTCAGTGCTACGATTGAGGCCGGGGTTCGACCGAGGGCGCATGTACGTATCATCAACAATTTACGCCCTGACCTGAACCTCATAATTCATTGTAAATCCAAAAACGCAGATGTAGGCACCCATTTAATCTTGTACGAACAAAATTTCGAGGTCGACTTTACCCTCAACTTCTGGGGGACTACCCTATACTTTTGTAGTATGGCTTGGAAATATTCACTCGAGTATTTCTATATTTATATACAGGACAGGGATCAGAGACTATGTAAAGTGTACGTGTGGAGCATAAGGGCGACTGGGCTGTGTATGTTCAATTACAAGACTGGTAAGTATATCTGCTATGGATGGAATCCACCCTTGGCATTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

142

Amino Acids

16.79

Weight (kDa)

9.15

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	33 - 134	5.5e-24	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	199
AfaI	GTAC	3 cut(s)	102, 191, 329
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	2 cut(s)	367, 421
AjuI	GAANNNNNNNTTGG	1 cut(s)	395
AluBI	AGCT	2 cut(s)	40, 46
AluI	AGCT	2 cut(s)	40, 46
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	97
AsuC2I	CCSGG	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	173
BccI	CCATC	2 cut(s)	18, 393
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	2 cut(s)	104, 331
BsaJI	CCNNGG	3 cut(s)	78, 89, 411
Bse1I	ACTGG	2 cut(s)	355, 382
BseDI	CCNNGG	3 cut(s)	78, 89, 411
BseGI	GGATG	1 cut(s)	404
BseMII	CTCAG	2 cut(s)	28, 73
BseNI	ACTGG	2 cut(s)	355, 382
BseRI	GAGGAG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	307
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	27, 72
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	355, 382
BssECI	CCNNGG	3 cut(s)	78, 89, 411
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	32
BstBAI	YACGTR	2 cut(s)	104, 331
BstDEI	CTNAG	2 cut(s)	14, 59
BstF5I	GGATG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	307
BstMCI	CGRYCG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	77
BstSNI	TACGTA	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	97
Csp6I	GTAC	3 cut(s)	101, 190, 328
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	6 cut(s)	9, 40, 46, 77, 260, 355
CviKI_1	RGCY	6 cut(s)	9, 40, 46, 77, 260, 355
CviQI	GTAC	3 cut(s)	101, 190, 328
DdeI	CTNAG	2 cut(s)	14, 59
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco105I	TACGTA	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	101
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	97
FblI	GTMKAC	1 cut(s)	210
FokI	GGATG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	211, 328
Hpy188I	TCNGA	2 cut(s)	17, 312
Hpy8I	GTNNAC	2 cut(s)	211, 328
HpyAV	CCTTC	1 cut(s)	12
HpyCH4IV	ACGT	2 cut(s)	103, 330
HpyCH4V	TGCA	1 cut(s)	34
HpyF3I	CTNAG	2 cut(s)	14, 59
HpySE526I	ACGT	2 cut(s)	103, 330
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	3 cut(s)	45, 51, 336
MaeII	ACGT	2 cut(s)	103, 330
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	19
MluCI	AATT	5 cut(s)	115, 141, 199, 367, 421
MnlI	CCTC	7 cut(s)	65, 67, 68, 84, 146, 199, 230
MseI	TTAA	2 cut(s)	182, 424
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	403
Ppu21I	YACGTR	2 cut(s)	104, 331
PspN4I	GGNNCC	1 cut(s)	175
PspXI	VCTCGAGB	1 cut(s)	275
RsaI	GTAC	3 cut(s)	102, 191, 329
RsaNI	GTAC	3 cut(s)	101, 190, 328
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	182, 424
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	8 cut(s)	23, 42, 48, 106, 132, 138, 210, 333
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SnaBI	TACGTA	1 cut(s)	104
Sse9I	AATT	5 cut(s)	115, 141, 199, 367, 421
SspI	AATATT	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	411
TaiI	ACGT	2 cut(s)	106, 333
TaqI	TCGA	4 cut(s)	85, 204, 210, 276
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	5 cut(s)	115, 141, 199, 367, 421
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	182, 424
Tru9I	TTAA	2 cut(s)	182, 424
TscAI	CASTG	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	67
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	101
XhoI	CTCGAG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.