Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

4455694 .. 4456089

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G062500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGACAAATTAATCATTTTGTTACTGATTTTTGCACTCATTAGTACCATTTGTGAGGGTAAATTTTGGGGTATAACGCATGTTAAAATTATCAATGGTTTGGAACCACCGGCAGATGTTACCGTTCATTGTAAATCCAAAGACGATGATCTTGGTGCTCGTCAACTTCAGTACAATGCTAGCTTTCAGTTTCAGTTTAGGCCCAACTTTTGGGGAAGTACACAATTCTACTGCAGCTTTGTGTGGCCAAAACAAATTCAATGGTTCGACATTTTCAAACACAGCAGGGATGATTGCAAGTTTTGTACGTGGATTGTCAAAACTGGAGGTCCATGTATGTACAATTATACCTCTGAGAGCTTTGATCAATGTCATCCCTGGAACAAGAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

132

Amino Acids

15.41

Weight (kDa)

8.16

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	210
AcoI	YGGCCR	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	62, 255, 390
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	5 cut(s)	46, 173, 220, 307, 341
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	260, 277
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	3 cut(s)	183, 237, 360
AluI	AGCT	3 cut(s)	183, 237, 360
Alw21I	GWGCWC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	200, 245
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	3 cut(s)	62, 255, 390
AseI	ATTAAT	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	201, 329
AsuNHI	GCTAGC	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	1 cut(s)	180
BfmI	CTRYAG	1 cut(s)	232
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	201, 329
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	379
BmtI	GCTAGC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	345
BsaAI	YACGTR	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	2 cut(s)	295, 373
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	246
BshFI	GGCC	2 cut(s)	202, 247
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	210
BsnI	GGCC	2 cut(s)	202, 247
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	148, 364
BspANI	GGCC	2 cut(s)	202, 247
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	236
BspOI	GCTAGC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	2 cut(s)	148, 364
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	124
BstAUI	TGTACA	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	295, 373
BstKTI	GATC	2 cut(s)	151, 367
BstMBI	GATC	2 cut(s)	148, 364
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	202, 247
BtsCI	GGATG	2 cut(s)	295, 373
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	201, 329
Csp6I	GTAC	5 cut(s)	45, 172, 219, 306, 340
CviAII	CATG	2 cut(s)	80, 333
CviJI	RGCY	5 cut(s)	183, 202, 237, 247, 360
CviKI_1	RGCY	5 cut(s)	183, 202, 237, 247, 360
CviQI	GTAC	5 cut(s)	45, 172, 219, 306, 340
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	150, 366
DpnII	GATC	2 cut(s)	148, 364
EaeI	YGGCCR	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	2 cut(s)	83, 336
FaiI	YATR	5 cut(s)	74, 81, 334, 338, 348
FatI	CATG	2 cut(s)	79, 332
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	2 cut(s)	302, 360
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	202, 247
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	2 cut(s)	83, 336
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	164, 221
Hpy188I	TCNGA	1 cut(s)	355
Hpy8I	GTNNAC	2 cut(s)	164, 221
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	3 cut(s)	35, 234, 297
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	83, 336
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	148, 364
LpnPI	CCDG	5 cut(s)	123, 271, 309, 364, 391
Lsp1109I	GCAGC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	2 cut(s)	21, 118
MalI	GATC	2 cut(s)	150, 366
MboI	GATC	2 cut(s)	148, 364
MhlI	GDGCHC	1 cut(s)	160
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	7 cut(s)	8, 62, 87, 224, 255, 343, 390
MluNI	TGGCCA	1 cut(s)	247
MnlI	CCTC	3 cut(s)	49, 320, 361
Mox20I	TGGCCA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	247
MseI	TTAA	2 cut(s)	11, 84
Msp20I	TGGCCA	1 cut(s)	247
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	148, 364
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	2 cut(s)	83, 336
NlaIV	GGNNCC	1 cut(s)	105
NspI	RCATGY	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	309
PshBI	ATTAAT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	2 cut(s)	201, 329
PstI	CTGCAG	1 cut(s)	236
RsaI	GTAC	5 cut(s)	46, 173, 220, 307, 341
RsaNI	GTAC	5 cut(s)	45, 172, 219, 306, 340
SaqAI	TTAA	2 cut(s)	11, 84
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	148, 364
Sau96I	GGNCC	2 cut(s)	201, 329
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	185, 239, 311, 331, 353, 362
SfcI	CTRYAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	329
Sse9I	AATT	7 cut(s)	8, 62, 87, 224, 255, 343, 390
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	267
TasI	AATT	7 cut(s)	8, 62, 87, 224, 255, 343, 390
TatI	WGTACW	3 cut(s)	171, 218, 339
Tru1I	TTAA	2 cut(s)	11, 84
Tru9I	TTAA	2 cut(s)	11, 84
TseI	GCWGC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	329
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	3 cut(s)	62, 255, 390
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.