Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

1471982 .. 1472413

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG015300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCCTTGCTTACCAGAAAGGCAACATTGTTGCTAATGGTGTTGGTGTTAACGTTCCTAGCCATATGTGAAGCTAAAATTACTGTTAGCATCAGTAACTTTTTGGCAGAGGAATATGAAGACGAAGCCAAGTTGGACCTAACTGTTCACTGTAAGTTCAAGGATGAGGATCTCGGCCCCCATGTCCTCTCCTTCCTCGAAGGGTATGAGTTTCGGTTCAACCCCAACATTTGGCGGACAACGCTGTTTCACTGCACTATGGCATGGCCCTCTCATTTTCACCATTTCGTGATCTACGATCAATCAAGGGATGGAGGTTGTATACTAAACGACTCTCAGTGTATTTGGCGTGTAATAGAATCCGGTCCATGCAAATTAGAAACCTTGCCCAATAGGACAGAGATATGGGATTCTTATCCATGGAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

143

Amino Acids

16.69

Weight (kDa)

5.26

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	29 - 131	4.9e-22	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	235
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	160, 220
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	3 cut(s)	3, 175, 266
AspS9I	GGNCC	4 cut(s)	136, 176, 267, 365
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	136, 365
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	59, 430
Bme18I	GGWCC	2 cut(s)	136, 365
BmgT120I	GGNCC	4 cut(s)	136, 176, 267, 365
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	99
BpiI	GAAGAC	1 cut(s)	126
BsaBI	GATNNNNATC	2 cut(s)	168, 414
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse8I	GATNNNNATC	2 cut(s)	168, 414
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	2 cut(s)	169, 316
BseJI	GATNNNNATC	2 cut(s)	168, 414
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	5, 177, 268
BsiSI	CCGG	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	231
BsnI	GGCC	3 cut(s)	5, 177, 268
Bsp143I	GATC	3 cut(s)	169, 291, 298
Bsp19I	CCATGG	1 cut(s)	419
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	3 cut(s)	5, 177, 268
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	169, 291, 298
BssNAI	GTATAC	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	419
Bst1107I	GTATAC	1 cut(s)	323
Bst4CI	ACNGT	3 cut(s)	85, 145, 152
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	169, 316
BstKTI	GATC	3 cut(s)	172, 294, 301
BstMBI	GATC	3 cut(s)	169, 291, 298
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BstZ17I	GTATAC	1 cut(s)	323
BsuRI	GGCC	3 cut(s)	5, 177, 268
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	169, 316
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	3 cut(s)	148, 250, 344
Cfr13I	GGNCC	4 cut(s)	136, 176, 267, 365
CviAII	CATG	4 cut(s)	182, 264, 369, 420
CviJI	RGCY	6 cut(s)	5, 62, 74, 128, 177, 268
CviKI_1	RGCY	6 cut(s)	5, 62, 74, 128, 177, 268
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	171, 293, 300
DpnII	GATC	3 cut(s)	169, 291, 298
EciI	GGCGGA	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	136, 365
EcoT14I	CCWWGG	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	4 cut(s)	185, 267, 372, 423
FatI	CATG	4 cut(s)	181, 263, 368, 419
FauNDI	CATATG	1 cut(s)	65
FblI	GTMKAC	1 cut(s)	322
FokI	GGATG	2 cut(s)	176, 323
FspBI	CTAG	2 cut(s)	59, 430
HaeIII	GGCC	3 cut(s)	5, 177, 268
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	4 cut(s)	185, 267, 372, 423
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	332, 359, 410
HpaI	GTTAAC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	363
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	51, 148, 323
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	3 cut(s)	51, 148, 323
HpyAV	CCTTC	2 cut(s)	194, 202
HpyCH4III	ACNGT	3 cut(s)	85, 145, 152
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	2 cut(s)	255, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	185, 267, 372, 423
KspAI	GTTAAC	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	169, 291, 298
LpnPI	CCDG	2 cut(s)	28, 376
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	2 cut(s)	59, 430
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	3 cut(s)	171, 293, 300
MboI	GATC	3 cut(s)	169, 291, 298
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	78, 374
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	6 cut(s)	103, 160, 197, 206, 280, 308
MseI	TTAA	1 cut(s)	50
MspI	CCGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	419
NdeI	CATATG	1 cut(s)	65
NdeII	GATC	3 cut(s)	169, 291, 298
NlaIII	CATG	4 cut(s)	185, 267, 372, 423
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PfeI	GAWTC	2 cut(s)	359, 410
PflMI	CCANNNNNTGG	1 cut(s)	231
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp1406I	AACGTT	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	4 cut(s)	136, 176, 267, 365
PsuI	RGATCY	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	169, 291, 298
Sau96I	GGNCC	4 cut(s)	136, 176, 267, 365
SchI	GAGTC	1 cut(s)	326
SetI	ASST	5 cut(s)	56, 76, 141, 319, 386
SfaNI	GCATC	1 cut(s)	99
SinI	GGWCC	2 cut(s)	136, 365
Sse9I	AATT	2 cut(s)	78, 374
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	59, 430
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	3 cut(s)	85, 145, 152
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	78, 374
TfiI	GAWTC	2 cut(s)	359, 410
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	3 cut(s)	155, 257, 344
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	3 cut(s)	155, 257, 344
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	2 cut(s)	136, 365
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	2 cut(s)	59, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.