Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

23009738 .. 23010175

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1231600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCCCAATTCATCTGATACACAAAATACAAACATGAATCGACTGCTGATCACTAGTTTGATGATTTTTGCACTCACCACCATGTGTGAGGGTGTATTTTGGGGCATAACTCATGTGAAAGTCATCAACGGTTTGGAACCCCAATCGGATGTTATCGCGCATTGTAGATCCAAGGACGATGATATCGGCGTTATTCAACTCCGCCATAACGATAGCTTTCAGTTTCAGTTCAGACCCAACTTCTGGAAGAAAACACTATTCTACTGCAGCTTTGTGTGGCCTGGCCAAGTCCAATGGTTCGACATTTTCAAGCACAGCAGGGACGATTGTAAGTTTTGTACGTGGTCGGTGAGAACTGGAGGACCATGCATGTACAATTACACTGCTGAAACTTTTGATCGATGCTTTAAGTGGAACAAAAAAAATCCCGTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

146

Amino Acids

17.13

Weight (kDa)

8.49

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	38 - 138	1.8e-26	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	283
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	340, 374
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	2 cut(s)	197, 310
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	216, 270
AluI	AGCT	2 cut(s)	216, 270
AlwI	GGATC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	278, 283
ApeKI	GCWGC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	67, 361
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	279
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	48
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	378
Bsa29I	ATCGAT	1 cut(s)	400
BsaAI	YACGTR	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	280, 285
BshVI	ATCGAT	1 cut(s)	400
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	280, 285
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	48, 167, 397
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	280, 285
BspDI	ATCGAT	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	162
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	3 cut(s)	48, 167, 397
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	342
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	3 cut(s)	51, 170, 400
BstMBI	GATC	3 cut(s)	48, 167, 397
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	280, 285
BsuTUI	ATCGAT	1 cut(s)	400
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	339, 373
CviAII	CATG	5 cut(s)	34, 82, 113, 366, 370
CviJI	RGCY	4 cut(s)	216, 270, 280, 285
CviKI_1	RGCY	4 cut(s)	216, 270, 280, 285
CviQI	GTAC	2 cut(s)	339, 373
DpnI	GATC	3 cut(s)	50, 169, 399
DpnII	GATC	3 cut(s)	48, 167, 397
DraIII	CACNNNGTG	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	5 cut(s)	37, 85, 116, 369, 373
FaiI	YATR	7 cut(s)	35, 83, 107, 114, 207, 367, 371
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	5 cut(s)	33, 81, 112, 365, 369
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	268
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	280, 285
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	37, 85, 116, 369, 373
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	67, 361
Hpy188I	TCNGA	3 cut(s)	16, 148, 233
Hpy188III	TCNNGA	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	71, 267, 369
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	5 cut(s)	37, 85, 116, 369, 373
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	48, 167, 397
LpnPI	CCDG	5 cut(s)	229, 267, 294, 304, 342
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	341
MalI	GATC	3 cut(s)	50, 169, 399
MboI	GATC	3 cut(s)	48, 167, 397
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	2 cut(s)	7, 376
MluNI	TGGCCA	1 cut(s)	285
MnlI	CCTC	2 cut(s)	82, 353
Mox20I	TGGCCA	1 cut(s)	285
Mph1103I	ATGCAT	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	158
NdeII	GATC	3 cut(s)	48, 167, 397
NlaIII	CATG	5 cut(s)	37, 85, 116, 369, 373
NlaIV	GGNNCC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	340, 374
RsaNI	GTAC	2 cut(s)	339, 373
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	3 cut(s)	48, 167, 397
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	3 cut(s)	218, 272, 344
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	2 cut(s)	7, 376
SsiI	CCGC	1 cut(s)	202
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	3 cut(s)	40, 300, 400
TasI	AATT	2 cut(s)	7, 376
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	373
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.