Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

18162598 .. 18163011

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCACATTGTTTTGCAGAAGTATTGTTTTCCTGCCAATGGTGTTTATGTTGATGGTCCTAACCATGTCCGAAGCCAAAACACATGTTCGCATCATCAACAATTTACCGGACAACATGGACCTTACCGTTCATTGTAAATCCGGGGAAGATGATCTCGGCACCCAAGTGCTCTCCTACCTCAGCTCCTATGAATTTCGTTTCAATCCAAACATTTGGGGGACAACACAGTTTTACTGCTCTATGGCGTGGCCGTCAAACTTGCACTATTTTGATATCTACATTCACAGAAGGGATTACAAATGTTATTGGAGCAAACACGTTTGTATGTGGCGTGTAACACCACAAGGTCCCTGCGTAGTGACGGACCTGCCTAATAACAAGACCATTTGTTATGTCTGGAATAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

138

Amino Acids

16.21

Weight (kDa)

7.6

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	29 - 134	3.3e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	3, 251
AcsI	RAATTY	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	40
AflIII	ACRYGT	2 cut(s)	85, 319
AgsI	TTSAA	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw21I	GWGCWC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	3, 251
ApoI	RAATTY	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	58, 121, 350, 367
AsuC2I	CCSGG	1 cut(s)	145
AvaII	GGWCC	4 cut(s)	58, 121, 350, 367
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	145
BfaI	CTAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	4 cut(s)	58, 121, 350, 367
BmgT120I	GGNCC	4 cut(s)	58, 121, 350, 367
BmiI	GGNNCC	2 cut(s)	163, 352
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	5, 253
BshNI	GGYRCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	110, 144
BslFI	GGGAC	2 cut(s)	235, 336
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	2 cut(s)	235, 336
BsnI	GGCC	2 cut(s)	5, 253
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	154
BspANI	GGCC	2 cut(s)	5, 253
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	163, 352
BspMI	ACCTGC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	130, 231
BstDEI	CTNAG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	5, 253
BveI	ACCTGC	1 cut(s)	378
Cfr13I	GGNCC	4 cut(s)	58, 121, 350, 367
CviAII	CATG	3 cut(s)	67, 86, 118
CviJI	RGCY	4 cut(s)	5, 77, 186, 253
CviKI_1	RGCY	4 cut(s)	5, 77, 186, 253
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	3, 251
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	4 cut(s)	58, 121, 350, 367
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	277
FaeI	CATG	3 cut(s)	70, 89, 121
FaiI	YATR	8 cut(s)	50, 68, 87, 119, 192, 245, 329, 396
FaqI	GGGAC	2 cut(s)	235, 336
FatI	CATG	3 cut(s)	66, 85, 117
FspBI	CTAG	1 cut(s)	412
HaeIII	GGCC	2 cut(s)	5, 253
HapII	CCGG	2 cut(s)	110, 144
Hin1II	CATG	3 cut(s)	70, 89, 121
HpaII	CCGG	2 cut(s)	110, 144
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	130, 231
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	18, 265
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	3 cut(s)	70, 89, 121
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	191, 312
LpnPI	CCDG	6 cut(s)	47, 123, 157, 367, 383, 385
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	412
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	2 cut(s)	337, 361
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	103, 194
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	110, 144
MspR9I	CCNGG	1 cut(s)	145
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	70, 89, 121
NlaIV	GGNNCC	2 cut(s)	163, 352
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	167
PciI	ACATGT	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	350
PscI	ACATGT	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	163, 352
PspPI	GGNCC	4 cut(s)	58, 121, 350, 367
PspPPI	RGGWCCY	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	167
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	4 cut(s)	58, 121, 350, 367
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	126, 183, 188, 324, 352, 372
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	4 cut(s)	58, 121, 350, 367
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	103, 194
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	130, 231
TaiI	ACGT	1 cut(s)	324
TasI	AATT	2 cut(s)	103, 194
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	122, 207
TspGWI	ACGGA	1 cut(s)	380
VpaK11BI	GGWCC	4 cut(s)	58, 121, 350, 367
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.