Prupe.1G062400_v2.0.a1

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001549
Physical Location & Seq
Forward (+)
4454078 .. 4454473
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G062400.1

Sequence Viewer

Length: 396 bp
ATGAATCCATTGTTGTTGCTGTTCATGTTTTTGCTCACTGCTAATTGTGAGGCTGCATGGCGTTCTACACATGTTCAAATCACTAACAATCTGGACCCAAACACCACAGATCTGACCATTCATTGTAAGTCCGCAGACGACGATCTAGGAGTTCATGTACTTCACTATCAAGAATTCTACGGGTGGGATTTCAAGATAAAATTTTTCGGGGGCACACAGTTCTGGTGCAGCTTTCAATGGCCTAACCAGTTTCATTGGCTTGACGTTTTCATAGAAGAGACATTTAATTGCAGGGACTGTAAATGGATTATCAGCAATGACGGTCCAAGCTTGTACAACAAGATTACCAAAGTTTATGATCATAAGAAATGGAACGACCAGAAGAAACGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

132

Amino Acids

15.69

Weight (kDa)

6.27

Isoelectric Point (pI)

29.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 173, 200
AfaI GTAC 2 cut(s) 159, 335
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 77, 193, 236
AluBI AGCT 2 cut(s) 231, 330
AluI AGCT 2 cut(s) 231, 330
Alw26I GTCTC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 297
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 2 cut(s) 53, 228
ApoI RAATTY 2 cut(s) 173, 200
AspS9I GGNCC 2 cut(s) 94, 323
AvaII GGWCC 2 cut(s) 94, 323
BaeGI GKGCMC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 40, 240
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 146
BglII AGATCT 1 cut(s) 109
BisI GCNGC 2 cut(s) 54, 229
BlsI GCNGC 2 cut(s) 55, 230
Bme18I GGWCC 2 cut(s) 94, 323
BmgT120I GGNCC 2 cut(s) 94, 323
BmiI GGNNCC 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 2 cut(s) 40, 240
BsgI GTGCAG 1 cut(s) 247
BshFI GGCC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 109, 142, 358
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 1 cut(s) 247
BssMI GATC 3 cut(s) 109, 142, 358
Bst4CI ACNGT 3 cut(s) 219, 299, 323
Bst6I CTCTTC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 333
BstKTI GATC 3 cut(s) 112, 145, 361
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 3 cut(s) 109, 142, 358
BstNSI RCATGY 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 40, 240
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 94, 323
Csp6I GTAC 2 cut(s) 158, 334
CviAII CATG 4 cut(s) 25, 57, 71, 155
CviJI RGCY 5 cut(s) 53, 231, 241, 259, 330
CviKI_1 RGCY 5 cut(s) 53, 231, 241, 259, 330
CviQI GTAC 2 cut(s) 158, 334
DpnI GATC 3 cut(s) 111, 144, 360
DpnII GATC 3 cut(s) 109, 142, 358
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco47I GGWCC 2 cut(s) 94, 323
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 4 cut(s) 28, 60, 74, 158
FaiI YATR 8 cut(s) 26, 58, 72, 156, 272, 357, 363, 394
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 24, 56, 70, 154
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 54, 229
Fsp4HI GCNGC 2 cut(s) 54, 229
FspBI CTAG 1 cut(s) 146
GluI GCNGC 2 cut(s) 54, 229
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 4 cut(s) 28, 60, 74, 158
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 92, 170, 193
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 3 cut(s) 219, 299, 323
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 56, 228, 291
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 4 cut(s) 28, 60, 74, 158
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 109, 142, 358
LpnPI CCDG 5 cut(s) 77, 208, 260, 277, 392
Lsp1109I GCAGC 2 cut(s) 40, 240
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 264
MalI GATC 3 cut(s) 111, 144, 360
MboI GATC 3 cut(s) 109, 142, 358
MboII GAAGA 2 cut(s) 287, 394
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 4 cut(s) 43, 173, 200, 286
MnlI CCTC 1 cut(s) 43
MseI TTAA 1 cut(s) 285
NdeII GATC 3 cut(s) 109, 142, 358
NlaIII CATG 4 cut(s) 28, 60, 74, 158
NlaIV GGNNCC 1 cut(s) 96
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 55, 230
PscI ACATGT 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 94, 323
PstNI CAGNNNCTG 1 cut(s) 297
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 2 cut(s) 159, 335
RsaNI GTAC 2 cut(s) 158, 334
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 2 cut(s) 54, 229
Sau3AI GATC 3 cut(s) 109, 142, 358
Sau96I GGNCC 2 cut(s) 94, 323
SduI GDGCHC 1 cut(s) 215
SetI ASST 3 cut(s) 233, 267, 332
SinI GGWCC 2 cut(s) 94, 323
Sse9I AATT 4 cut(s) 43, 173, 200, 286
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 219, 299, 323
TaiI ACGT 1 cut(s) 267
TasI AATT 4 cut(s) 43, 173, 200, 286
TatI WGTACW 2 cut(s) 157, 333
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 53, 228
TspDTI ATGAA 6 cut(s) 13, 17, 110, 143, 242, 259
TspRI CASTG 1 cut(s) 43
VpaK11BI GGWCC 2 cut(s) 94, 323
XapI RAATTY 2 cut(s) 173, 200
XceI RCATGY 1 cut(s) 74
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.