Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

4449949 .. 4450344

Gene Structure 396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G062300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAATCCATTGTTGCTGCTGTTCATGTTTTTGCTCACTGCTAATTGTGAGGCTGCATGGCGTTCTACACATGTTCAAATCACTAACAATCTGGACCCAAATACCACAGATCTGACCATTCATTGCAAGTCCGCGGACGACGATCTAGGAGTTCATGTACTTCACCATCAAGAATTCTACAGGTGGGATTTCAAGATAAACTTGTTCGGGGGCACACAGTTCTGGTGCAGCTTTCAATGGCTTAACCAGTTTCATTGGCTTGACGTTTTCATAGAAGAGACATTTAATTGCAGGGACTGTAAATGGATTATCAGCAATGACGGTCCAAGCTTGTACAACAAGATTACCAAAGTTTATGATCATAAGAAATGGAACGACGAGAAGAAACGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

132

Amino Acids

15.73

Weight (kDa)

6.12

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	134
AciI	CCGC	2 cut(s)	132, 134
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	2 cut(s)	159, 335
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	77, 193, 236
AluBI	AGCT	2 cut(s)	231, 330
AluI	AGCT	2 cut(s)	231, 330
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	16, 53, 228
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	94, 323
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	94, 323
BaeGI	GKGCMC	1 cut(s)	215
BbvI	GCAGC	3 cut(s)	3, 40, 240
BccI	CCATC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	3 cut(s)	17, 54, 229
BlsI	GCNGC	3 cut(s)	18, 55, 230
Bme18I	GGWCC	2 cut(s)	94, 323
BmgT120I	GGNCC	2 cut(s)	94, 323
BmiI	GGNNCC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	2 cut(s)	121, 322
BseDI	CCNNGG	1 cut(s)	132
BseMI	GCAATG	2 cut(s)	121, 322
BseNI	ACTGG	1 cut(s)	247
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	3, 40, 240
BsgI	GTGCAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	109, 142, 358
BspACI	CCGC	2 cut(s)	132, 134
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	121, 322
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	3 cut(s)	109, 142, 358
Bst4CI	ACNGT	3 cut(s)	219, 299, 323
Bst6I	CTCTTC	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	134
BstKTI	GATC	3 cut(s)	112, 145, 361
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	3 cut(s)	109, 142, 358
BstNSI	RCATGY	1 cut(s)	74
BstSFI	CTRYAG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	215
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	3 cut(s)	3, 40, 240
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	297
Cfr13I	GGNCC	2 cut(s)	94, 323
Cfr42I	CCGCGG	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	158, 334
CviAII	CATG	4 cut(s)	25, 57, 71, 155
CviJI	RGCY	5 cut(s)	53, 231, 241, 259, 330
CviKI_1	RGCY	5 cut(s)	53, 231, 241, 259, 330
CviQI	GTAC	2 cut(s)	158, 334
DpnI	GATC	3 cut(s)	111, 144, 360
DpnII	GATC	3 cut(s)	109, 142, 358
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	94, 323
EcoRI	GAATTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	28, 60, 74, 158
FaiI	YATR	8 cut(s)	26, 58, 72, 156, 272, 357, 363, 394
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	4 cut(s)	24, 56, 70, 154
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	17, 54, 229
Fsp4HI	GCNGC	3 cut(s)	17, 54, 229
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	3 cut(s)	17, 54, 229
Hin1II	CATG	4 cut(s)	28, 60, 74, 158
HindIII	AAGCTT	1 cut(s)	328
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	3 cut(s)	92, 170, 193
Hpy99I	CGWCG	2 cut(s)	143, 380
HpyCH4III	ACNGT	3 cut(s)	219, 299, 323
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	56, 126, 228, 291
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	28, 60, 74, 158
Ksp22I	TGATCA	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	135
Kzo9I	GATC	3 cut(s)	109, 142, 358
LpnPI	CCDG	5 cut(s)	77, 166, 208, 260, 277
Lsp1109I	GCAGC	3 cut(s)	3, 40, 240
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	111, 144, 360
MboI	GATC	3 cut(s)	109, 142, 358
MboII	GAAGA	2 cut(s)	287, 394
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	43, 173, 286
MnlI	CCTC	1 cut(s)	43
MseI	TTAA	2 cut(s)	243, 285
MspA1I	CMGCKG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	134
NdeII	GATC	3 cut(s)	109, 142, 358
NlaIII	CATG	4 cut(s)	28, 60, 74, 158
NlaIV	GGNNCC	1 cut(s)	96
NspI	RCATGY	1 cut(s)	74
PciI	ACATGT	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	18, 55, 230
PscI	ACATGT	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	2 cut(s)	94, 323
PstNI	CAGNNNCTG	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	159, 335
RsaNI	GTAC	2 cut(s)	158, 334
SacII	CCGCGG	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	243, 285
SatI	GCNGC	3 cut(s)	17, 54, 229
Sau3AI	GATC	3 cut(s)	109, 142, 358
Sau96I	GGNCC	2 cut(s)	94, 323
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	4 cut(s)	185, 233, 267, 332
SfcI	CTRYAG	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	135
SgrBI	CCGCGG	1 cut(s)	135
SinI	GGWCC	2 cut(s)	94, 323
Sse9I	AATT	3 cut(s)	43, 173, 286
SsiI	CCGC	2 cut(s)	132, 134
SspMI	CTAG	1 cut(s)	146
TaaI	ACNGT	3 cut(s)	219, 299, 323
TaiI	ACGT	1 cut(s)	267
TasI	AATT	3 cut(s)	43, 173, 286
TatI	WGTACW	2 cut(s)	157, 333
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	243, 285
Tru9I	TTAA	2 cut(s)	243, 285
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	3 cut(s)	16, 53, 228
TspDTI	ATGAA	6 cut(s)	13, 17, 110, 143, 242, 259
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	94, 323
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	74
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.