Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

482598 .. 483005

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1004300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCTTCTTCGCAAGAAATGCACTGCTGCTAATGCTGCTTATGTTGATTCTAATTATGTCTGATGCAGTAACTGTTGTGATCGAAAATTATTTGTGGGATCAATCGGGCGACTCGCCACTGAAAGTTCACTGCAAATCCAAAGACGATGACCTTGGTGTCCATGCCGTCCCCCTTGCTGACTCCTACGAATTTAAGTTCCATCCAAACATATGGCGGACCACGCTATTTTATTGCAGCTTTGAGTGGCAGGGCCAACTTCACCATTTCGATATATACGACCAAGGAAGGGATGGAGGTTGTGTACTAGACGACAGCGTTTGTTTATGGCGGATACAAGTGAACGGTCCGTCCAGGTTCAACGGCTATACTGGCTCATATGATCTTCTGTATGCATGGAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

136

Amino Acids

15.61

Weight (kDa)

4.97

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	25 - 133	2.3e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AciI	CCGC	2 cut(s)	217, 331
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	353
AloI	GAACNNNNNNTCC	2 cut(s)	335, 367
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
AlwI	GGATC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	3, 253
ApeKI	GCWGC	3 cut(s)	28, 37, 237
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	219, 253, 347
AsuHPI	GGTGA	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	219, 347
BbvI	GCAGC	3 cut(s)	15, 24, 249
BccI	CCATC	2 cut(s)	210, 287
BceAI	ACGGC	2 cut(s)	152, 379
BciT130I	CCWGG	1 cut(s)	355
BciVI	GTATCC	1 cut(s)	327
BfaI	CTAG	2 cut(s)	308, 406
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	3 cut(s)	29, 38, 238
BlsI	GCNGC	3 cut(s)	30, 39, 239
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	2 cut(s)	219, 347
BmgT120I	GGNCC	3 cut(s)	219, 253, 347
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	154, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	288, 318
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	2 cut(s)	154, 283
BseGI	GGATG	2 cut(s)	202, 298
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	15, 24, 249
BshFI	GGCC	2 cut(s)	5, 255
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	5, 255
Bsp143I	GATC	3 cut(s)	81, 100, 382
BspACI	CCGC	2 cut(s)	217, 331
BspANI	GGCC	2 cut(s)	5, 255
BspPI	GGATC	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	154, 283
BssMI	GATC	3 cut(s)	81, 100, 382
BssT1I	CCWWGG	2 cut(s)	154, 283
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	76, 347
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	202, 298
BstKTI	GATC	3 cut(s)	84, 103, 385
BstMBI	GATC	3 cut(s)	81, 100, 382
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 34, 37, 223, 372
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	15, 24, 249
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	5, 255
BtsCI	GGATG	2 cut(s)	202, 298
BtsI	GCAGTG	2 cut(s)	23, 130
BtsIMutI	CAGTG	3 cut(s)	23, 119, 130
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	219, 253, 347
CpoI	CGGWCCG	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	305
CspI	CGGWCCG	1 cut(s)	347
CviAII	CATG	2 cut(s)	164, 396
CviJI	RGCY	5 cut(s)	5, 240, 255, 366, 375
CviKI_1	RGCY	5 cut(s)	5, 240, 255, 366, 375
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	3 cut(s)	83, 102, 384
DpnII	GATC	3 cut(s)	81, 100, 382
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EciI	GGCGGA	2 cut(s)	232, 346
Eco130I	CCWWGG	2 cut(s)	154, 283
Eco47I	GGWCC	2 cut(s)	219, 347
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	154, 283
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	2 cut(s)	154, 283
FaeI	CATG	2 cut(s)	167, 399
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	163, 395
FauNDI	CATATG	2 cut(s)	212, 379
Fnu4HI	GCNGC	3 cut(s)	29, 38, 238
FokI	GGATG	2 cut(s)	189, 305
Fsp4HI	GCNGC	3 cut(s)	29, 38, 238
FspBI	CTAG	2 cut(s)	308, 406
GluI	GCNGC	3 cut(s)	29, 38, 238
HaeIII	GGCC	2 cut(s)	5, 255
Hin1II	CATG	2 cut(s)	167, 399
HinfI	GANTC	3 cut(s)	49, 113, 182
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	130, 305, 343
Hpy188I	TCNGA	1 cut(s)	64
Hpy8I	GTNNAC	3 cut(s)	130, 305, 343
HpyAV	CCTTC	3 cut(s)	16, 282, 394
HpyCH4III	ACNGT	2 cut(s)	76, 347
HpyCH4V	TGCA	5 cut(s)	23, 68, 135, 237, 395
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 34, 37, 223, 372
Hsp92II	CATG	2 cut(s)	167, 399
Kzo9I	GATC	3 cut(s)	81, 100, 382
LpnPI	CCDG	4 cut(s)	236, 340, 357, 367
Lsp1109I	GCAGC	3 cut(s)	15, 24, 249
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	308, 406
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	83, 102, 384
MboI	GATC	3 cut(s)	81, 100, 382
MboII	GAAGA	1 cut(s)	377
MluCI	AATT	3 cut(s)	54, 88, 191
MlyI	GAGTC	2 cut(s)	107, 176
MnlI	CCTC	1 cut(s)	290
Mph1103I	ATGCAT	1 cut(s)	397
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 34, 37, 223, 372
NdeI	CATATG	2 cut(s)	212, 379
NdeII	GATC	3 cut(s)	81, 100, 382
NlaIII	CATG	2 cut(s)	167, 399
NsiI	ATGCAT	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	3 cut(s)	30, 39, 239
PleI	GAGTC	2 cut(s)	107, 176
PpsI	GAGTC	2 cut(s)	107, 176
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspPI	GGNCC	3 cut(s)	219, 253, 347
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
Rsr2I	CGGWCCG	1 cut(s)	347
RsrII	CGGWCCG	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	3 cut(s)	29, 38, 238
Sau3AI	GATC	3 cut(s)	81, 100, 382
Sau96I	GGNCC	3 cut(s)	219, 253, 347
SchI	GAGTC	2 cut(s)	107, 176
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	4 cut(s)	156, 242, 301, 359
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	2 cut(s)	219, 347
Sse9I	AATT	3 cut(s)	54, 88, 191
SsiI	CCGC	2 cut(s)	217, 331
SspMI	CTAG	2 cut(s)	308, 406
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	2 cut(s)	154, 283
TaaI	ACNGT	2 cut(s)	76, 347
TaqI	TCGA	2 cut(s)	84, 270
TasI	AATT	3 cut(s)	54, 88, 191
TatI	WGTACW	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	3 cut(s)	30, 126, 137
TseI	GCWGC	3 cut(s)	28, 37, 237
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	3 cut(s)	30, 126, 137
VpaK11BI	GGWCC	2 cut(s)	219, 347
XapI	RAATTY	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	308, 406
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.