Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003094.1

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

128650 .. 130136

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003094.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgttgaaagccaaaacacatgttcgcatcattaacaatttaccggacgacatgcaactacacatccattgtcaatccggggacaatgatcttggcttccatgaactctccaacctcagctctttcgaatttggtttcaagccgaactggtttgggacgactcgatttttttgcttcatggcgtggctctccaatggtcactattttgatatctacgagtaccggagagatggtattgggatggtcttagggagagggctcgatctagttgatatcgggagcagctatgtacaaaatcacggggttgaatcctctgttctgatacctgccaagatagaaatacgtcaggggagaccggggttgccggcttataacccttcgatgcctaagtcaatatctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

134

Amino Acids

15.18

Weight (kDa)

6.57

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	2 cut(s)	221, 291
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	7, 139, 308
AluBI	AGCT	2 cut(s)	120, 285
AluI	AGCT	2 cut(s)	120, 285
Alw26I	GTCTC	1 cut(s)	346
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	128
AsuC2I	CCSGG	2 cut(s)	79, 357
AsuII	TTCGAA	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	224, 235
BcgI	CGANNNNNNTGC	2 cut(s)	153, 187
BcnI	CCSGG	2 cut(s)	79, 357
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	79, 357
BmrFI	CCNGG	2 cut(s)	79, 357
BmsI	GCATC	2 cut(s)	36, 372
Bpu10I	CCTNAGC	1 cut(s)	116
Bpu14I	TTCGAA	1 cut(s)	126
BpuMI	CCSGG	2 cut(s)	79, 357
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	2 cut(s)	78, 356
BsaWI	WCCGGW	2 cut(s)	43, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bse118I	RCCGGY	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	78, 356
BseGI	GGATG	2 cut(s)	63, 246
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	294
BsiSI	CCGG	5 cut(s)	44, 78, 223, 356, 365
BslFI	GGGAC	2 cut(s)	95, 169
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	95, 169
Bso31I	GGTCTC	1 cut(s)	346
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	88, 262
BspCNI	CTCAG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	334
BspT104I	TTCGAA	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	364
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	78, 356
BssMI	GATC	2 cut(s)	88, 262
BstAUI	TGTACA	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	116, 247, 387
BstF5I	GGATG	2 cut(s)	63, 246
BstKTI	GATC	2 cut(s)	91, 265
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	2 cut(s)	88, 262
BstNSI	RCATGY	2 cut(s)	23, 55
BstSCI	CCNGG	2 cut(s)	77, 355
BstV1I	GCAGC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	63, 246
BveI	ACCTGC	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	220, 290
CviAII	CATG	4 cut(s)	20, 52, 101, 178
CviJI	RGCY	8 cut(s)	11, 96, 120, 142, 187, 259, 285, 368
CviKI_1	RGCY	8 cut(s)	11, 96, 120, 142, 187, 259, 285, 368
CviQI	GTAC	2 cut(s)	220, 290
DdeI	CTNAG	3 cut(s)	116, 247, 387
DpnI	GATC	2 cut(s)	90, 264
DpnII	GATC	2 cut(s)	88, 262
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	346
Eco32I	GATATC	2 cut(s)	211, 274
EcoRV	GATATC	2 cut(s)	211, 274
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	4 cut(s)	23, 55, 104, 181
FaiI	YATR	6 cut(s)	21, 53, 102, 179, 288, 372
FaqI	GGGAC	2 cut(s)	95, 169
FatI	CATG	4 cut(s)	19, 51, 100, 177
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	2 cut(s)	50, 253
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	283
HapII	CCGG	5 cut(s)	44, 78, 223, 356, 365
Hin1II	CATG	4 cut(s)	23, 55, 104, 181
HinfI	GANTC	2 cut(s)	160, 308
HpaII	CCGG	5 cut(s)	44, 78, 223, 356, 365
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	116, 247, 387
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	23, 55, 104, 181
KroI	GCCGGC	1 cut(s)	364
KroNI	GCCGGC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	88, 262
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	8 cut(s)	57, 91, 133, 236, 332, 339, 369, 378
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	2 cut(s)	36, 372
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	2 cut(s)	90, 264
MboI	GATC	2 cut(s)	88, 262
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	37, 128
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	125, 248, 322
MroNI	GCCGGC	1 cut(s)	364
MseI	TTAA	1 cut(s)	33
MspI	CCGG	5 cut(s)	44, 78, 223, 356, 365
MspR9I	CCNGG	2 cut(s)	79, 357
NaeI	GCCGGC	1 cut(s)	366
NciI	CCSGG	2 cut(s)	79, 357
NdeII	GATC	2 cut(s)	88, 262
NgoMIV	GCCGGC	1 cut(s)	364
NlaIII	CATG	4 cut(s)	23, 55, 104, 181
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	2 cut(s)	23, 55
NspV	TTCGAA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PscI	ACATGT	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	372
RsaI	GTAC	2 cut(s)	221, 291
RsaNI	GTAC	2 cut(s)	220, 290
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	88, 262
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	79, 357
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	5 cut(s)	117, 122, 287, 328, 346
SfaNI	GCATC	2 cut(s)	36, 372
SfuI	TTCGAA	1 cut(s)	126
Sse9I	AATT	2 cut(s)	37, 128
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	77, 355
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	126, 163, 261, 380
TasI	AATT	2 cut(s)	37, 128
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	282
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	117, 166
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	2 cut(s)	23, 55
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.