Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

23025205 .. 23025594

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1231700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGACATTGACAATTTTGTTGATTTTCGCATTCCCCACAATCTGTGAGGGTGCTACTTTCTGGGTTCCAACGGATGTTAAAATAATCAACGGTTTGAGTCCGCGGACAGATCTTAACGTTCGTTGTAGATCCAAGAACGATGATCTAGGCTTGCACTCTCTTCGCCCCGGAGGCAGCTTCGAGTTTCGTTTCAGGCCTAACTATTGGAGGACTACACGATTCTATTGCAGCTTTCGATGGAGTGGCCAATTTCGTCGGTTCGACATTTTCGTACACAAAAGGGATGATTGCAGGCATTGTACATGGATGATCAGAACTTTAGGCCCGTGCAGGTGCAACCAAGACAACAAAAACTACGATAAATGTTATCCGTGGGACAAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

130

Amino Acids

15.5

Weight (kDa)

9.4

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	27 - 126	1.9e-30	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	324
AccII	CGCG	1 cut(s)	106
AciI	CCGC	2 cut(s)	104, 106
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	126
AcoI	YGGCCR	1 cut(s)	247
AfaI	GTAC	2 cut(s)	276, 304
AluBI	AGCT	2 cut(s)	180, 234
AluI	AGCT	2 cut(s)	180, 234
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	197, 247, 325
ApeKI	GCWGC	2 cut(s)	177, 231
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	189, 243
BccI	CCATC	1 cut(s)	234
BcgI	CGANNNNNNTGC	4 cut(s)	146, 180, 210, 244
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	171
BfaI	CTAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	2 cut(s)	178, 232
BlsI	GCNGC	2 cut(s)	179, 233
Bme1390I	CCNGG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	104, 169, 374
BseDI	CCNNGG	3 cut(s)	104, 169, 374
BseGI	GGATG	3 cut(s)	82, 292, 315
BseXI	GCAGC	2 cut(s)	189, 243
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	199, 249, 327
BsiSI	CCGG	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	199, 249, 327
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	112, 131, 145, 312
BspACI	CCGC	2 cut(s)	104, 106
BspANI	GGCC	3 cut(s)	199, 249, 327
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	104, 169, 374
BssMI	GATC	4 cut(s)	112, 131, 145, 312
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	155, 296
BstDSI	CCRYGG	2 cut(s)	104, 374
BstF5I	GGATG	3 cut(s)	82, 292, 315
BstFNI	CGCG	1 cut(s)	106
BstKTI	GATC	4 cut(s)	115, 134, 148, 315
BstMBI	GATC	4 cut(s)	112, 131, 145, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	189, 243
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	112, 131
BstYI	RGATCY	2 cut(s)	112, 131
BsuRI	GGCC	3 cut(s)	199, 249, 327
BtgI	CCRYGG	2 cut(s)	104, 374
BtsCI	GGATG	3 cut(s)	82, 292, 315
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	155, 296
Cfr13I	GGNCC	1 cut(s)	326
Cfr42I	CCGCGG	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	275, 303
CviAII	CATG	1 cut(s)	306
CviJI	RGCY	6 cut(s)	153, 180, 199, 234, 249, 327
CviKI_1	RGCY	6 cut(s)	153, 180, 199, 234, 249, 327
CviQI	GTAC	2 cut(s)	275, 303
DpnI	GATC	4 cut(s)	114, 133, 147, 314
DpnII	GATC	4 cut(s)	112, 131, 145, 312
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	199
FaeI	CATG	1 cut(s)	309
FaiI	YATR	1 cut(s)	307
FatI	CATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	178, 232
FokI	GGATG	3 cut(s)	89, 299, 322
Fsp4HI	GCNGC	2 cut(s)	178, 232
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	2 cut(s)	178, 232
HaeIII	GGCC	3 cut(s)	199, 249, 327
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	309
HinfI	GANTC	2 cut(s)	100, 222
HpaII	CCGG	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	5 cut(s)	157, 231, 294, 333, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	312
KspI	CCGCGG	1 cut(s)	107
Kzo9I	GATC	4 cut(s)	112, 131, 145, 312
LpnPI	CCDG	5 cut(s)	49, 181, 184, 280, 319
Lsp1109I	GCAGC	2 cut(s)	189, 243
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	120
MalI	GATC	4 cut(s)	114, 133, 147, 314
MboI	GATC	4 cut(s)	112, 131, 145, 312
MboII	GAAGA	2 cut(s)	16, 155
MflI	RGATCY	2 cut(s)	112, 131
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	2 cut(s)	15, 251
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	3 cut(s)	43, 167, 204
Mox20I	TGGCCA	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	3 cut(s)	81, 117, 388
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	32
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	4 cut(s)	112, 131, 145, 312
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	179, 233
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	112, 131
RsaI	GTAC	2 cut(s)	276, 304
RsaNI	GTAC	2 cut(s)	275, 303
SacII	CCGCGG	1 cut(s)	107
SaqAI	TTAA	3 cut(s)	81, 117, 388
SatI	GCNGC	2 cut(s)	178, 232
Sau3AI	GATC	4 cut(s)	112, 131, 145, 312
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	4 cut(s)	123, 182, 236, 338
Sfr303I	CCGCGG	1 cut(s)	107
SgrBI	CCGCGG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	15, 251
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	104, 106
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	183, 238, 264
TasI	AATT	2 cut(s)	15, 251
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	81, 117, 388
Tru9I	TTAA	3 cut(s)	81, 117, 388
TseI	GCWGC	2 cut(s)	177, 231
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	89, 363
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.