FvH4_4g05600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001549
Physical Location & Seq
Reverse (-)
4878668 .. 4879204
537 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05600.t1

Sequence Viewer

Length: 354 bp
ATGTCAAGTAGATCCGGAATCAATAATTATTTTGAATATGATAAAGCAAAAGCACATGTTTGTATCATCAACGACTTACACCCTGATCTGAACCTCAAAATTCACTGCAAATCCAAGACGAAAGATGTAGGCAGCCATGACATCCCGTACCGAGAATATTTCGAGTTTGAATTCCGACCCAACTTTTGGGGGACTACACAATACTGGTGCAGTATGGAGTGGAAATACACATTCCACGTACTATTTCGACATTTACATACAAAAAATAGGGATCTATATCACACTGCAATGTGTGATATGGAGCATAACATTGAAAGGTCCTTGCATGTTCAATTACAAGACTCAGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

118

Amino Acids

14.22

Weight (kDa)

6.53

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 19 - 89 3.9e-19 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 14
AclWI GGATC 2 cut(s) 6, 279
AcsI RAATTY 2 cut(s) 99, 170
AfaI GTAC 2 cut(s) 149, 240
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 4 cut(s) 35, 170, 314, 332
AlwI GGATC 2 cut(s) 6, 279
Aor13HI TCCGGA 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 99, 170
ArsI GACNNNNNNTTYG 2 cut(s) 168, 200
AspS9I GGNCC 1 cut(s) 318
AvaII GGWCC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 144
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 294
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 14
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 144
BsgI GTGCAG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 14
Bsp143I GATC 3 cut(s) 11, 85, 271
BspEI TCCGGA 1 cut(s) 14
BspPI GGATC 2 cut(s) 6, 279
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 209
BssMI GATC 3 cut(s) 11, 85, 271
BstBAI YACGTR 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 3 cut(s) 14, 88, 274
BstMBI GATC 3 cut(s) 11, 85, 271
BstNSI RCATGY 2 cut(s) 59, 329
BstV1I GCAGC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 11, 271
BstYI RGATCY 2 cut(s) 11, 271
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 103, 282
BtsIMutI CAGTG 2 cut(s) 103, 282
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 2 cut(s) 148, 239
CviAII CATG 3 cut(s) 56, 137, 326
CviJI RGCY 1 cut(s) 135
CviKI_1 RGCY 1 cut(s) 135
CviQI GTAC 2 cut(s) 148, 239
DdeI CTNAG 1 cut(s) 343
DpnI GATC 3 cut(s) 13, 87, 273
DpnII GATC 3 cut(s) 11, 85, 271
Eco47I GGWCC 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 318
EcoRI GAATTC 1 cut(s) 170
FaeI CATG 3 cut(s) 59, 140, 329
FaqI GGGAC 1 cut(s) 205
FatI CATG 3 cut(s) 55, 136, 325
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HapII CCGG 1 cut(s) 15
Hin1II CATG 3 cut(s) 59, 140, 329
HinfI GANTC 2 cut(s) 18, 341
HpaII CCGG 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 90, 176, 346
Hpy188III TCNNGA 1 cut(s) 15
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 4 cut(s) 108, 210, 287, 325
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 3 cut(s) 59, 140, 329
Kpn2I TCCGGA 1 cut(s) 14
Kzo9I GATC 3 cut(s) 11, 85, 271
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 3 cut(s) 28, 96, 190
Lsp1109I GCAGC 1 cut(s) 144
MaeII ACGT 1 cut(s) 237
MalI GATC 3 cut(s) 13, 87, 273
MboI GATC 3 cut(s) 11, 85, 271
MflI RGATCY 2 cut(s) 11, 271
MluCI AATT 4 cut(s) 25, 99, 170, 332
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 104
MroI TCCGGA 1 cut(s) 14
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 15
NdeII GATC 3 cut(s) 11, 85, 271
NlaIII CATG 3 cut(s) 59, 140, 329
NspI RCATGY 2 cut(s) 59, 329
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 318
PscI ACATGT 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 318
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 2 cut(s) 11, 271
RsaI GTAC 2 cut(s) 149, 240
RsaNI GTAC 2 cut(s) 148, 239
RseI CAYNNNNRTG 1 cut(s) 287
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 3 cut(s) 11, 85, 271
Sau96I GGNCC 1 cut(s) 318
SchI GAGTC 1 cut(s) 335
SetI ASST 3 cut(s) 96, 240, 320
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 4 cut(s) 25, 99, 170, 332
SspI AATATT 1 cut(s) 158
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 162, 247
TasI AATT 4 cut(s) 25, 99, 170, 332
TfiI GAWTC 1 cut(s) 18
TscAI CASTG 2 cut(s) 110, 289
TseI GCWGC 1 cut(s) 132
TspRI CASTG 2 cut(s) 110, 289
Van91I CCANNNNNTGG 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 318
XapI RAATTY 2 cut(s) 99, 170
XceI RCATGY 2 cut(s) 59, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.