Rmu_sc0001035.1_g000059

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001035.1
OG0001549
Physical Location & Seq
Forward (+)
297988 .. 300410
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001035.1_g000059.1.cds

Sequence Viewer

Length: 936 bp
atgtccgaagccaaaacacatgttcgcatcactaacgatttaccaaacaacatggacctaaccgttcattgtaaatccagggaagacaacctcggcgcccacgtactctcctacctcgactcttatgaatttcgtttcaatccaaacatcgtggggtcaactttgttttactgctctatggcctggccgtcacacactcgctattttaatatttacagtttcagaagagatggcagttgtgaatggagcaaacatgtttgtttgtggagggtaacaccagaagtgtccggatgtggatgtcccttgaataatcccaatcgaagggaaggctgcatggtgttggtgatgttgtccagatcgcggggaggctccgtcaggttctcgtgcagacggtgggacggtggctggtgggtttcgatctccccaagattggagtgcagacggggggaggggaggttggctggtggcgacgagtcagtggcggcgaggtggggatatgcagtgctgctatcggatcagattgttctgatctggtttgggcatgcttcgatcttgcttggaaccgctgtgtggcaaggggtggagagggttgggaggggagatgattcttgcaagcgtgatggggttgaaggacggacggagggatggtcggtgcctgctcagtgcgacgggtatctcgccggtggtgggacgacggggtctatgcatgcgagatggctgcatggtgacacgaacagcctatgctctcggaattatgcttgggtttgggcccactgtttggttgttgggtcgggtcgggtgcactacaattttggcattgacaatcttctattcagcggtctagaggtcgttcctgttctggagttaggtcagcagcggtggcgaaattgtctggcggtggcatactggcatagacaatcatccttggccttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

311

Amino Acids

35.01

Weight (kDa)

8.54

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AccB1I GGYRCC 2 cut(s) 95, 652
AccB7I CCANNNNNTGG 1 cut(s) 778
AccII CGCG 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 6 cut(s) 361, 482, 564, 837, 877, 896
AclWI GGATC 1 cut(s) 522
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 6 cut(s) 321, 360, 430, 570, 687, 778
AflIII ACRYGT 2 cut(s) 19, 253
AgsI TTSAA 3 cut(s) 139, 307, 629
AjnI CCWGG 2 cut(s) 77, 182
Alw21I GWGCWC 1 cut(s) 804
Alw44I GTGCAC 1 cut(s) 800
AlwI GGATC 1 cut(s) 522
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 4 cut(s) 180, 185, 768, 927
ApaI GGGCCC 1 cut(s) 772
ApaLI GTGCAC 1 cut(s) 800
ApeKI GCWGC 4 cut(s) 330, 505, 718, 874
ApoI RAATTY 1 cut(s) 128
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 55, 768, 769
AsuHPI GGTGA 2 cut(s) 355, 737
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 2 cut(s) 772, 804
BanI GGYRCC 2 cut(s) 95, 652
BanII GRGCYC 1 cut(s) 772
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 317, 492, 705, 886
BccI CCATC 4 cut(s) 224, 614, 639, 708
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 700, 734
BciT130I CCWGG 2 cut(s) 79, 184
BfaI CTAG 2 cut(s) 842, 934
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 5 cut(s) 331, 483, 506, 719, 875
BlsI GCNGC 5 cut(s) 332, 484, 507, 720, 876
Bme1390I CCNGG 2 cut(s) 79, 184
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 55, 768, 769
BmiI GGNNCC 5 cut(s) 97, 370, 562, 654, 770
BmrFI CCNGG 2 cut(s) 79, 184
BmsI GCATC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 881
BsaAI YACGTR 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 78, 91, 924
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 8 cut(s) 92, 122, 357, 387, 440, 470, 632, 662
Bsc4I CCNNNNNNNGG 6 cut(s) 321, 360, 430, 570, 687, 778
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 911
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 2 cut(s) 79, 184
BseDI CCNNGG 3 cut(s) 78, 91, 924
BseGI GGATG 4 cut(s) 296, 302, 650, 920
BseLI CCNNNNNNNGG 6 cut(s) 321, 360, 430, 570, 687, 778
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 1 cut(s) 911
BseSI GKGCMC 2 cut(s) 772, 804
BseXI GCAGC 4 cut(s) 317, 492, 705, 886
BsgI GTGCAG 2 cut(s) 406, 457
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 4 cut(s) 182, 187, 770, 929
BshNI GGYRCC 2 cut(s) 95, 652
BsiHKAI GWGCWC 1 cut(s) 804
BsiSI CCGG 2 cut(s) 288, 681
BslFI GGGAC 3 cut(s) 285, 410, 703
BslI CCNNNNNNNGG 6 cut(s) 321, 360, 430, 570, 687, 778
BsmFI GGGAC 3 cut(s) 285, 410, 703
BsnI GGCC 4 cut(s) 182, 187, 770, 929
Bsp120I GGGCCC 1 cut(s) 768
Bsp1286I GDGCHC 2 cut(s) 772, 804
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 5 cut(s) 356, 417, 514, 528, 549
BspACI CCGC 6 cut(s) 361, 482, 564, 837, 877, 896
BspANI GGCC 4 cut(s) 182, 187, 770, 929
BspCNI CTCAG 1 cut(s) 673
BspEI TCCGGA 1 cut(s) 287
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 5 cut(s) 97, 370, 562, 654, 770
BspPI GGATC 1 cut(s) 522
BspT107I GGYRCC 2 cut(s) 95, 652
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 1 cut(s) 911
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 78, 91, 924
BssMI GATC 5 cut(s) 356, 417, 514, 528, 549
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 924
Bst2BI CACGAG 1 cut(s) 382
Bst2UI CCWGG 2 cut(s) 79, 184
Bst4CI ACNGT 5 cut(s) 64, 218, 393, 401, 776
Bst6I CTCTTC 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 103
BstC8I GCNNGC 4 cut(s) 543, 614, 657, 708
BstDEI CTNAG 1 cut(s) 660
BstF5I GGATG 4 cut(s) 296, 302, 650, 920
BstFNI CGCG 1 cut(s) 361
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 5 cut(s) 359, 420, 517, 531, 552
BstMBI GATC 5 cut(s) 356, 417, 514, 528, 549
BstMWI GCNNNNNNNGC 1 cut(s) 880
BstNI CCWGG 2 cut(s) 79, 184
BstNSI RCATGY 4 cut(s) 23, 257, 545, 710
BstSCI CCNGG 2 cut(s) 77, 182
BstSLI GKGCMC 2 cut(s) 772, 804
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 317, 492, 705, 886
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 4 cut(s) 182, 187, 770, 929
BtsCI GGATG 4 cut(s) 296, 302, 650, 920
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 4 cut(s) 483, 507, 668, 772
Cac8I GCNNGC 4 cut(s) 543, 614, 657, 708
CfoI GCGC 1 cut(s) 98
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 55, 768, 769
Csp6I GTAC 1 cut(s) 104
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 7 cut(s) 20, 52, 254, 334, 542, 707, 722
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 1 cut(s) 660
DinI GGCGCC 1 cut(s) 97
DpnI GATC 5 cut(s) 358, 419, 516, 530, 551
DpnII GATC 5 cut(s) 356, 417, 514, 528, 549
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 924
Eco24I GRGCYC 1 cut(s) 772
Eco47I GGWCC 1 cut(s) 55
EcoRII CCWGG 2 cut(s) 77, 182
EcoT14I CCWWGG 1 cut(s) 924
EcoT22I ATGCAT 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 772
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 924
FaeI CATG 7 cut(s) 23, 55, 257, 337, 545, 710, 725
FaqI GGGAC 3 cut(s) 285, 410, 703
FatI CATG 7 cut(s) 19, 51, 253, 333, 541, 706, 721
FauI CCCGC 1 cut(s) 354
Fnu4HI GCNGC 5 cut(s) 331, 483, 506, 719, 875
FokI GGATG 4 cut(s) 303, 309, 657, 907
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 5 cut(s) 331, 483, 506, 719, 875
FspBI CTAG 2 cut(s) 842, 934
GlaI GCGC 1 cut(s) 97
GluI GCNGC 5 cut(s) 331, 483, 506, 719, 875
GsuI CTGGAG 1 cut(s) 881
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 4 cut(s) 182, 187, 770, 929
HapII CCGG 2 cut(s) 288, 681
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 7 cut(s) 23, 55, 257, 337, 545, 710, 725
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 3 cut(s) 119, 473, 605
HpaII CCGG 2 cut(s) 288, 681
HphI GGTGA 2 cut(s) 355, 737
Hpy166II GTNNAC 2 cut(s) 159, 802
Hpy188I TCNGA 6 cut(s) 7, 224, 514, 519, 528, 750
Hpy188III TCNNGA 4 cut(s) 288, 354, 842, 860
Hpy8I GTNNAC 2 cut(s) 159, 802
Hpy99I CGWCG 3 cut(s) 473, 671, 697
HpyAV CCTTC 3 cut(s) 315, 320, 623
HpyCH4III ACNGT 5 cut(s) 64, 218, 393, 401, 776
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 8 cut(s) 333, 387, 438, 500, 612, 706, 721, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 880
HpyF3I CTNAG 1 cut(s) 660
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 7 cut(s) 23, 55, 257, 337, 545, 710, 725
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 5 cut(s) 356, 417, 514, 528, 549
LmnI GCTCC 2 cut(s) 246, 374
Lsp1109I GCAGC 4 cut(s) 317, 492, 705, 886
LweI GCATC 1 cut(s) 36
MaeI CTAG 2 cut(s) 842, 934
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 3 cut(s) 189, 271, 725
MalI GATC 5 cut(s) 358, 419, 516, 530, 551
MboI GATC 5 cut(s) 356, 417, 514, 528, 549
MboII GAAGA 3 cut(s) 95, 237, 818
MhlI GDGCHC 2 cut(s) 772, 804
MluCI AATT 4 cut(s) 128, 751, 808, 886
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 2 cut(s) 113, 482
Mph1103I ATGCAT 1 cut(s) 708
MroI TCCGGA 1 cut(s) 287
MseI TTAA 1 cut(s) 207
MspA1I CMGCKG 3 cut(s) 566, 837, 877
MspI CCGG 2 cut(s) 288, 681
MspR9I CCNGG 2 cut(s) 79, 184
MvaI CCWGG 2 cut(s) 79, 184
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 880
NarI GGCGCC 1 cut(s) 96
NdeII GATC 5 cut(s) 356, 417, 514, 528, 549
NlaIII CATG 7 cut(s) 23, 55, 257, 337, 545, 710, 725
NlaIV GGNNCC 5 cut(s) 97, 370, 562, 654, 770
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 189, 725
NsiI ATGCAT 1 cut(s) 708
NspI RCATGY 4 cut(s) 23, 257, 545, 710
PaeI GCATGC 2 cut(s) 545, 710
PciI ACATGT 2 cut(s) 19, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PfeI GAWTC 1 cut(s) 605
PflFI GACNNNGTC 1 cut(s) 697
PflMI CCANNNNNTGG 1 cut(s) 778
PkrI GCNGC 5 cut(s) 332, 484, 507, 720, 876
PleI GAGTC 2 cut(s) 113, 481
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 2 cut(s) 113, 481
Ppu21I YACGTR 1 cut(s) 103
PscI ACATGT 2 cut(s) 19, 253
Psp6I CCWGG 2 cut(s) 77, 182
PspGI CCWGG 2 cut(s) 77, 182
PspN4I GGNNCC 5 cut(s) 97, 370, 562, 654, 770
PspOMI GGGCCC 1 cut(s) 768
PspPI GGNCC 3 cut(s) 55, 768, 769
PsyI GACNNNGTC 1 cut(s) 697
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 5 cut(s) 331, 483, 506, 719, 875
Sau3AI GATC 5 cut(s) 356, 417, 514, 528, 549
Sau96I GGNCC 3 cut(s) 55, 768, 769
SchI GAGTC 2 cut(s) 113, 482
ScrFI CCNGG 2 cut(s) 79, 184
SduI GDGCHC 2 cut(s) 772, 804
SetI ASST 9 cut(s) 60, 93, 105, 117, 380, 458, 491, 849, 871
SfaNI GCATC 1 cut(s) 36
SfoI GGCGCC 1 cut(s) 97
SgrAI CRCCGGYG 1 cut(s) 680
SinI GGWCC 1 cut(s) 55
SphI GCATGC 2 cut(s) 545, 710
Sse9I AATT 4 cut(s) 128, 751, 808, 886
SsiI CCGC 6 cut(s) 361, 482, 564, 837, 877, 896
SspDI GGCGCC 1 cut(s) 95
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 842, 934
StyD4I CCNGG 2 cut(s) 77, 182
StyI CCWWGG 1 cut(s) 924
TaaI ACNGT 5 cut(s) 64, 218, 393, 401, 776
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 117, 319, 416, 548
TasI AATT 4 cut(s) 128, 751, 808, 886
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 4 cut(s) 483, 507, 668, 779
TseFI GTSAC 2 cut(s) 189, 725
TseI GCWGC 4 cut(s) 330, 505, 718, 874
Tsp45I GTSAC 2 cut(s) 189, 725
TspDTI ATGAA 2 cut(s) 56, 141
TspGWI ACGGA 3 cut(s) 361, 649, 653
TspRI CASTG 4 cut(s) 483, 507, 668, 779
Tth111I GACNNNGTC 1 cut(s) 697
Van91I CCANNNNNTGG 1 cut(s) 778
VneI GTGCAC 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 128
XbaI TCTAGA 1 cut(s) 841
XceI RCATGY 4 cut(s) 23, 257, 545, 710
XspI CTAG 2 cut(s) 842, 934
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.