Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Reverse (-)

43373470 .. 43373883

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCTCATTGGTTTTCAGAAGTTTTGTTTTCCTGCCAATGATGTTTGTGTTGATGGTCCTAACCATGTCCGAAGCCAAAACACATGTTCGCATCACTAACGATTTACCAAACAACATGGACCTAACCGTTCATTGCAAATCCAGGGAAGACAACCTCGGCGCCCACGTACTCTCCTACCTCGACTCTTATGAATTTCGTTTCAATCCAAACATCGTGGGGTCAACTTTGTTTTACTGCTCTATGGCCTGGCCGTCACACACTCGCTATTTTAATATTTACAGTTTCAGAAGAGATGGCAGTTGTGAATGGAGCAAACATGTTTGTTTGTGGAGGGTAACACCAGAAGGTCCTTGCATAGTGAAGAACTTGAGTAATAACCAGACAGTTTGTTACAATTGGAAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

137

Amino Acids

16.08

Weight (kDa)

8.57

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	29 - 134	1.4e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	171
AflIII	ACRYGT	2 cut(s)	85, 319
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	143, 248
AoxI	GGCC	3 cut(s)	3, 246, 251
ApoI	RAATTY	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	58, 121, 350
AvaII	GGWCC	3 cut(s)	58, 121, 350
BanI	GGYRCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	156
BccI	CCATC	2 cut(s)	49, 290
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	2 cut(s)	145, 250
BfoI	RGCGCY	1 cut(s)	165
Bme1390I	CCNGG	2 cut(s)	145, 250
Bme18I	GGWCC	3 cut(s)	58, 121, 350
BmgT120I	GGNCC	3 cut(s)	58, 121, 350
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	2 cut(s)	145, 250
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	391
BsaAI	YACGTR	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	144, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse3DI	GCAATG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	145, 250
BseDI	CCNNGG	2 cut(s)	144, 157
BseMI	GCAATG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	5, 248, 253
BshNI	GGYRCC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	5, 248, 253
BspANI	GGCC	3 cut(s)	5, 248, 253
BspLI	GGNNCC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	144, 157
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	145, 250
Bst4CI	ACNGT	3 cut(s)	130, 284, 388
Bst6I	CTCTTC	1 cut(s)	286
BstACI	GRCGYC	1 cut(s)	162
BstBAI	YACGTR	1 cut(s)	169
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	145, 250
BstNSI	RCATGY	2 cut(s)	89, 323
BstSCI	CCNGG	2 cut(s)	143, 248
BstV2I	GAAGAC	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	5, 248, 253
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	58, 121, 350
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviAII	CATG	4 cut(s)	67, 86, 118, 320
CviJI	RGCY	4 cut(s)	5, 77, 248, 253
CviKI_1	RGCY	4 cut(s)	5, 77, 248, 253
CviQI	GTAC	1 cut(s)	170
DinI	GGCGCC	1 cut(s)	163
EaeI	YGGCCR	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco47I	GGWCC	3 cut(s)	58, 121, 350
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRII	CCWGG	2 cut(s)	143, 248
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
FaeI	CATG	4 cut(s)	70, 89, 121, 323
FaiI	YATR	7 cut(s)	68, 87, 119, 192, 245, 321, 359
FatI	CATG	4 cut(s)	66, 85, 117, 319
GlaI	GCGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	5, 248, 253
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	70, 89, 121, 323
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	20, 73, 290
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	3 cut(s)	130, 284, 388
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	138, 357
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	70, 89, 121, 323
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	312
LpnPI	CCDG	7 cut(s)	47, 130, 157, 235, 262, 357, 395
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	255, 337, 392
MboII	GAAGA	3 cut(s)	161, 303, 376
MfeI	CAATTG	1 cut(s)	397
MluCI	AATT	2 cut(s)	194, 397
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	16, 167, 191, 327
MseI	TTAA	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	145, 250
MunI	CAATTG	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	145, 250
NarI	GGCGCC	1 cut(s)	162
NlaIII	CATG	4 cut(s)	70, 89, 121, 323
NlaIV	GGNNCC	1 cut(s)	163
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	255
NspI	RCATGY	2 cut(s)	89, 323
PciI	ACATGT	2 cut(s)	85, 319
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PleI	GAGTC	1 cut(s)	179
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	350
PscI	ACATGT	2 cut(s)	85, 319
Psp5II	RGGWCCY	1 cut(s)	350
Psp6I	CCWGG	2 cut(s)	143, 248
PspGI	CCWGG	2 cut(s)	143, 248
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	58, 121, 350
PspPPI	RGGWCCY	1 cut(s)	350
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	273
Sau96I	GGNCC	3 cut(s)	58, 121, 350
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	145, 250
SetI	ASST	5 cut(s)	126, 159, 171, 183, 352
SfaNI	GCATC	1 cut(s)	102
SfoI	GGCGCC	1 cut(s)	163
SinI	GGWCC	3 cut(s)	58, 121, 350
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	194, 397
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	143, 248
TaaI	ACNGT	3 cut(s)	130, 284, 388
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	183
TasI	AATT	2 cut(s)	194, 397
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	2 cut(s)	122, 207
VpaK11BI	GGWCC	3 cut(s)	58, 121, 350
XapI	RAATTY	1 cut(s)	194
XceI	RCATGY	2 cut(s)	89, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.