Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001549

Physical Location & Seq

Genomic Coordinates Forward (+)

4438101 .. 4440059

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G062100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAATCAATTGAGGGTGTTGCTAGTGACATTTTTGCTCGCGGCTATTGGTGTGGCTGCAATGCCTGCCACTCAGTTCAGATCTAGCGGCGGCATTCTTGACACACATATTCATATTACCAACGGTCTAGGTCCAGACGTAGATCTCAGCATTCATTGTAAGTCTGCAGATGATGATCTAGGAGAACATCTGATTCATTATGAAACTATCTATGGGTTTGATTTCAGAATTAAGATTTTTGGGGGCACACAATTCTTTTGTAGCTTTCAGTGGCCTGGCCAATTCCATTGGTTTGACATTTTCATACAAGATAGAGATAACTGCGAGAATTGTGCGTGGTTGATCAAAGCTGACGGTCCACGCAGATTTAACAGTGAAACTCGTAGTTATGATGATGTATATCAGTGGAACGACCAAGAGAACCGAAACCATGAAACAGGAAAAAGGTGGTGCAAGCACCAGAGCCGTAGCATTGCCATAACTCTACACACCTTCCAAGATTTACGCGAGAGATCGCGTTTTGGATTGGCCGTTGCATCCAAGAGATGCAACCAGGTCGAGAAGGAAGAATTCAAGATCGTCGACGCACCTATAAGAGAACAGCAACCAATCGGAGGGCAGCCAAAGAAAAACTATAAGAGGAATGGAATGGTGGAGATTTGGGATTGCAAACAAGGAGGCATGAAGCCTCAGAAACGAGCAAGTGAAGCTCGAACACATCACCAGACTCAAACGACGAGAGATCTTCGGACCAACAAGATGGGGATTCCAAATGCTCCGAGAGAAAAACCTCGAAAGACTAGCAAGACACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

272

Amino Acids

31.39

Weight (kDa)

9.15

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04645
fragaria_vesca	FvH4_2g30460 FvH4_3g25180 FvH4_4g05600
malus_domestica	MD13G1228400.v1.1 MD13G1231600.v1.1 MD13G1231700.v1.1 MD14G1004300.v1.1
prunus_persica	Prupe.1G062000_v2.0.a1 Prupe.1G062100_v2.0.a1 Prupe.1G062300_v2.0.a1 Prupe.1G062400_v2.0.a1 Prupe.1G062500_v2.0.a1 Prupe.1G062600_v2.0.a1 Prupe.1G062700_v2.0.a1 Prupe.1G062800_v2.0.a1 Prupe.1G062900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0397181 RchiOBHm_Chr4g0397201 RchiOBHm_Chr4g0397211 RchiOBHm_Chr5g0046141 RchiOBHm_Chr6g0244081 RchiOBHm_Chr6g0312461 RchiOBHm_Chr6g0312471
rosa_laevigata	RLG00000010327 RLG00000015384 RLG00000034380
rosa_multiflora	Rmu_co8450703.1_g000001 Rmu_sc0001035.1_g000059 Rmu_sc0002312.1_g000061 Rmu_sc0003094.1_g000020
rosa_roxburghii	Rroxscaffold_7G00216090
rosa_rugosa	Rorug03G0344000 Rorug03G0344100 Rorug05G0225200
rosa_samantha	Rh4CG083200 Rh4DG071200 Rh4DG071300 Rh5BG314500 Rh5CG341000 Rh5DG324800 Rh6AG021700 Rh6BG017400 Rh6CG014100 Rh6CG529900 Rh6DG015300 Rh7BG231700
rosa_wichuraiana	Rw4G006300 Rw5G028630 Rw6G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	3 cut(s)	41, 507, 517
AciI	CCGC	3 cut(s)	41, 87, 90
AcoI	YGGCCR	2 cut(s)	277, 528
AcsI	RAATTY	1 cut(s)	569
AfiI	CCNNNNNNNGG	1 cut(s)	614
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	2 cut(s)	274, 552
AluBI	AGCT	3 cut(s)	264, 350, 710
AluI	AGCT	3 cut(s)	264, 350, 710
AoxI	GGCC	3 cut(s)	272, 277, 528
ApeKI	GCWGC	2 cut(s)	56, 619
ApoI	RAATTY	1 cut(s)	569
AspS9I	GGNCC	3 cut(s)	131, 356, 750
AsuHPI	GGTGA	1 cut(s)	713
AvaII	GGWCC	3 cut(s)	131, 356, 750
BaeGI	GKGCMC	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	43, 631
BccI	CCATC	1 cut(s)	754
BceAI	ACGGC	2 cut(s)	450, 515
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 538, 572
BciT130I	CCWGG	2 cut(s)	276, 554
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	5 cut(s)	23, 84, 128, 179, 801
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	3 cut(s)	80, 142, 742
BisI	GCNGC	5 cut(s)	42, 57, 88, 91, 620
BlsI	GCNGC	5 cut(s)	43, 58, 89, 92, 621
Bme1390I	CCNGG	2 cut(s)	276, 554
Bme18I	GGWCC	3 cut(s)	131, 356, 750
BmgT120I	GGNCC	3 cut(s)	131, 356, 750
BmrFI	CCNGG	2 cut(s)	276, 554
BmsI	GCATC	2 cut(s)	536, 545
BsaBI	GATNNNNATC	2 cut(s)	174, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	614
Bse3DI	GCAATG	2 cut(s)	66, 471
Bse8I	GATNNNNATC	2 cut(s)	174, 399
BseBI	CCWGG	2 cut(s)	276, 554
BseGI	GGATG	1 cut(s)	536
BseJI	GATNNNNATC	2 cut(s)	174, 399
BseLI	CCNNNNNNNGG	1 cut(s)	614
BseMI	GCAATG	2 cut(s)	66, 471
BseMII	CTCAG	3 cut(s)	86, 160, 704
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	43, 631
Bsh1236I	CGCG	3 cut(s)	41, 507, 517
BshFI	GGCC	3 cut(s)	274, 279, 530
BslI	CCNNNNNNNGG	1 cut(s)	614
BsmI	GAATGC	2 cut(s)	93, 150
BsnI	GGCC	3 cut(s)	274, 279, 530
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
BspACI	CCGC	3 cut(s)	41, 87, 90
BspANI	GGCC	3 cut(s)	274, 279, 530
BspCNI	CTCAG	3 cut(s)	85, 159, 703
BspFNI	CGCG	3 cut(s)	41, 507, 517
BspMAI	CTGCAG	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	66, 471
BssMI	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
Bst2UI	CCWGG	2 cut(s)	276, 554
Bst4CI	ACNGT	4 cut(s)	125, 356, 374, 813
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	39, 66, 455
BstDEI	CTNAG	3 cut(s)	72, 146, 690
BstF5I	GGATG	1 cut(s)	536
BstFNI	CGCG	3 cut(s)	41, 507, 517
BstKTI	GATC	7 cut(s)	83, 145, 178, 345, 515, 579, 745
BstMBI	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 707
BstNI	CCWGG	2 cut(s)	276, 554
BstSCI	CCNGG	2 cut(s)	274, 552
BstSFI	CTRYAG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	3 cut(s)	41, 507, 517
BstV1I	GCAGC	2 cut(s)	43, 631
BstX2I	RGATCY	3 cut(s)	80, 142, 742
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	3 cut(s)	80, 142, 742
BsuRI	GGCC	3 cut(s)	274, 279, 530
BtsCI	GGATG	1 cut(s)	536
BtsIMutI	CAGTG	3 cut(s)	275, 379, 410
Cac8I	GCNNGC	3 cut(s)	39, 66, 455
Cfr13I	GGNCC	3 cut(s)	131, 356, 750
CseI	GACGC	1 cut(s)	593
CsiI	ACCWGGT	1 cut(s)	552
CviAII	CATG	2 cut(s)	431, 682
DdeI	CTNAG	3 cut(s)	72, 146, 690
DpnI	GATC	7 cut(s)	82, 144, 177, 344, 514, 578, 744
DpnII	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
EaeI	YGGCCR	2 cut(s)	277, 528
Eco47I	GGWCC	3 cut(s)	131, 356, 750
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	2 cut(s)	274, 552
FaeI	CATG	2 cut(s)	434, 685
FatI	CATG	2 cut(s)	430, 681
FbaI	TGATCA	1 cut(s)	342
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	5 cut(s)	42, 57, 88, 91, 620
FokI	GGATG	1 cut(s)	523
Fsp4HI	GCNGC	5 cut(s)	42, 57, 88, 91, 620
FspBI	CTAG	5 cut(s)	23, 84, 128, 179, 801
GluI	GCNGC	5 cut(s)	42, 57, 88, 91, 620
HaeIII	GGCC	3 cut(s)	274, 279, 530
HgaI	GACGC	1 cut(s)	593
Hin1II	CATG	2 cut(s)	434, 685
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	4, 193, 727, 766
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	2 cut(s)	359, 583
Hpy188I	TCNGA	7 cut(s)	80, 192, 227, 614, 693, 750, 780
Hpy188III	TCNNGA	4 cut(s)	98, 134, 559, 574
Hpy8I	GTNNAC	2 cut(s)	359, 583
Hpy99I	CGWCG	3 cut(s)	584, 587, 739
HpyAV	CCTTC	2 cut(s)	502, 556
HpyCH4III	ACNGT	4 cut(s)	125, 356, 374, 813
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	59, 167, 453, 536, 549, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 707
HpyF3I	CTNAG	3 cut(s)	72, 146, 690
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	434, 685
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
LmnI	GCTCC	1 cut(s)	781
LpnPI	CCDG	9 cut(s)	78, 147, 261, 288, 423, 473, 539, 566, 737
Lsp1109I	GCAGC	2 cut(s)	43, 631
LweI	GCATC	2 cut(s)	536, 545
MabI	ACCWGGT	1 cut(s)	552
MaeI	CTAG	5 cut(s)	23, 84, 128, 179, 801
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	7 cut(s)	82, 144, 177, 344, 514, 578, 744
MboI	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
MboII	GAAGA	2 cut(s)	578, 737
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	3 cut(s)	80, 142, 742
MhlI	GDGCHC	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	6 cut(s)	8, 228, 251, 281, 328, 569
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	721
MnlI	CCTC	6 cut(s)	6, 608, 633, 671, 699, 801
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	2 cut(s)	231, 369
Msp20I	TGGCCA	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	276, 554
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	2 cut(s)	93, 150
MvaI	CCWGG	2 cut(s)	276, 554
MvnI	CGCG	3 cut(s)	41, 507, 517
MwoI	GCNNNNNNNGC	2 cut(s)	65, 707
NdeII	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
NlaIII	CATG	2 cut(s)	434, 685
NmuCI	GTSAC	1 cut(s)	25
PctI	GAATGC	2 cut(s)	93, 150
PfeI	GAWTC	3 cut(s)	4, 193, 766
PkrI	GCNGC	5 cut(s)	43, 58, 89, 92, 621
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
Psp6I	CCWGG	2 cut(s)	274, 552
PspGI	CCWGG	2 cut(s)	274, 552
PspPI	GGNCC	3 cut(s)	131, 356, 750
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	3 cut(s)	80, 142, 742
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	2 cut(s)	231, 369
SatI	GCNGC	5 cut(s)	42, 57, 88, 91, 620
Sau3AI	GATC	7 cut(s)	80, 142, 175, 342, 512, 576, 742
Sau96I	GGNCC	3 cut(s)	131, 356, 750
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	276, 554
SduI	GDGCHC	1 cut(s)	248
SexAI	ACCWGGT	1 cut(s)	552
SfaNI	GCATC	2 cut(s)	536, 545
SfcI	CTRYAG	1 cut(s)	165
SgrDI	CGTCGACG	1 cut(s)	581
SinI	GGWCC	3 cut(s)	131, 356, 750
Sse9I	AATT	6 cut(s)	8, 228, 251, 281, 328, 569
SsiI	CCGC	3 cut(s)	41, 87, 90
SspMI	CTAG	5 cut(s)	23, 84, 128, 179, 801
StyD4I	CCNGG	2 cut(s)	274, 552
TaaI	ACNGT	4 cut(s)	125, 356, 374, 813
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	4 cut(s)	558, 582, 712, 793
TasI	AATT	6 cut(s)	8, 228, 251, 281, 328, 569
TauI	GCSGC	3 cut(s)	44, 90, 93
TfiI	GAWTC	3 cut(s)	4, 193, 766
Tru1I	TTAA	2 cut(s)	231, 369
Tru9I	TTAA	2 cut(s)	231, 369
TscAI	CASTG	3 cut(s)	275, 379, 410
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	56, 619
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	8 cut(s)	17, 101, 143, 185, 216, 292, 447, 698
TspRI	CASTG	3 cut(s)	275, 379, 410
VpaK11BI	GGWCC	3 cut(s)	131, 356, 750
XapI	RAATTY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	5 cut(s)	23, 84, 128, 179, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.