helicase protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MOM1 | PF25029 | 948 - 1064 | 8.7e-43 | MOM1-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 5405 |
| AarI | CACCTGC | 5 cut(s) | 196, 562, 772, 871, 5096 |
| Acc36I | ACCTGC | 6 cut(s) | 196, 517, 562, 772, 871, 5096 |
| AccB1I | GGYRCC | 1 cut(s) | 4168 |
| AccBSI | CCGCTC | 3 cut(s) | 1674, 2148, 5056 |
| AccI | GTMKAC | 3 cut(s) | 368, 856, 2335 |
| AclI | AACGTT | 1 cut(s) | 3831 |
| AcuI | CTGAAG | 9 cut(s) | 177, 291, 1785, 2469, 2556, 5331, 5540, 5591, 5658 |
| AcvI | CACGTG | 2 cut(s) | 1233, 1919 |
| AcyI | GRCGYC | 1 cut(s) | 2180 |
| AflIII | ACRYGT | 4 cut(s) | 1230, 1232, 1916, 4586 |
| AgeI | ACCGGT | 1 cut(s) | 4868 |
| AhlI | ACTAGT | 6 cut(s) | 478, 593, 803, 902, 3235, 3497 |
| AjnI | CCWGG | 9 cut(s) | 94, 1650, 1746, 3162, 4899, 4930, 5038, 5629, 5791 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 5402, 5434 |
| AleI | CACNNNNGTG | 2 cut(s) | 2217, 4826 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 945, 977 |
| Alw21I | GWGCWC | 5 cut(s) | 1546, 4029, 4744, 5476, 5527 |
| Alw44I | GTGCAC | 1 cut(s) | 5523 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 152, 4988, 5039 |
| Ama87I | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| AoxI | GGCC | 4 cut(s) | 2346, 2649, 4086, 4645 |
| ApaLI | GTGCAC | 1 cut(s) | 5523 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1801, 1833, 4001, 4033 |
| AseI | ATTAAT | 2 cut(s) | 3282, 3699 |
| AsiGI | ACCGGT | 1 cut(s) | 4868 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1770, 5429 |
| AspA2I | CCTAGG | 1 cut(s) | 4792 |
| AspLEI | GCGC | 1 cut(s) | 4627 |
| AspS9I | GGNCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| AsuC2I | CCSGG | 3 cut(s) | 116, 2611, 2612 |
| AsuII | TTCGAA | 2 cut(s) | 1526, 5329 |
| AsuNHI | GCTAGC | 1 cut(s) | 5497 |
| AvaI | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| AvaII | GGWCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| AvrII | CCTAGG | 1 cut(s) | 4792 |
| AxyI | CCTNAGG | 2 cut(s) | 5467, 5652 |
| BaeGI | GKGCMC | 3 cut(s) | 611, 4900, 5527 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 258, 291, 4938, 4971 |
| BanI | GGYRCC | 1 cut(s) | 4168 |
| BanII | GRGCYC | 3 cut(s) | 1546, 4674, 5476 |
| BauI | CACGAG | 1 cut(s) | 3993 |
| BbrPI | CACGTG | 2 cut(s) | 1233, 1919 |
| BbsI | GAAGAC | 5 cut(s) | 272, 1732, 2403, 4116, 5261 |
| Bbv12I | GWGCWC | 5 cut(s) | 1546, 4029, 4744, 5476, 5527 |
| BbvCI | CCTCAGC | 3 cut(s) | 3678, 5547, 5727 |
| BceAI | ACGGC | 3 cut(s) | 1259, 2281, 5144 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 769, 803, 3277, 3311, 4345, 4379 |
| BciT130I | CCWGG | 9 cut(s) | 96, 1652, 1748, 3164, 4901, 4932, 5040, 5631, 5793 |
| BciVI | GTATCC | 2 cut(s) | 286, 4189 |
| BclI | TGATCA | 3 cut(s) | 1153, 4411, 4576 |
| BcnI | CCSGG | 3 cut(s) | 116, 2611, 2612 |
| BcuI | ACTAGT | 6 cut(s) | 478, 593, 803, 902, 3235, 3497 |
| BfmI | CTRYAG | 8 cut(s) | 510, 555, 1107, 1134, 1924, 2130, 3261, 5645 |
| BfuAI | ACCTGC | 6 cut(s) | 196, 517, 562, 772, 871, 5096 |
| BfuI | GTATCC | 2 cut(s) | 286, 4189 |
| BlnI | CCTAGG | 1 cut(s) | 4792 |
| BlpI | GCTNAGC | 2 cut(s) | 4668, 4989 |
| BmcAI | AGTACT | 1 cut(s) | 3550 |
| Bme18I | GGWCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| BmeT110I | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| BmgT120I | GGNCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| BmiI | GGNNCC | 9 cut(s) | 180, 1446, 2858, 3910, 4170, 4686, 5044, 5595, 5640 |
| BmrI | ACTGGG | 2 cut(s) | 690, 4177 |
| BmtI | GCTAGC | 1 cut(s) | 5501 |
| BmuI | ACTGGG | 2 cut(s) | 690, 4177 |
| BpiI | GAAGAC | 5 cut(s) | 272, 1732, 2403, 4116, 5261 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 163, 195, 414, 446 |
| BpmI | CTGGAG | 8 cut(s) | 129, 1493, 1655, 2211, 2687, 3185, 3662, 5240 |
| Bpu10I | CCTNAGC | 5 cut(s) | 2358, 3678, 4743, 5547, 5727 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 4668, 4989 |
| Bpu14I | TTCGAA | 2 cut(s) | 1526, 5329 |
| BpuEI | CTTGAG | 4 cut(s) | 416, 3537, 5871, 5971 |
| BpuMI | CCSGG | 3 cut(s) | 116, 2611, 2612 |
| BsaAI | YACGTR | 3 cut(s) | 1233, 1919, 2008 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2021, 5394 |
| BsaHI | GRCGYC | 1 cut(s) | 2180 |
| BsaI | GGTCTC | 1 cut(s) | 632 |
| BsaJI | CCNNGG | 8 cut(s) | 94, 115, 2609, 2610, 3870, 4792, 4899, 5477 |
| BsaWI | WCCGGW | 4 cut(s) | 209, 331, 2836, 4868 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1671, 1701, 5848, 5878 |
| Bse118I | RCCGGY | 1 cut(s) | 4868 |
| Bse21I | CCTNAGG | 2 cut(s) | 5467, 5652 |
| Bse3DI | GCAATG | 2 cut(s) | 523, 5538 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2021, 5394 |
| BseBI | CCWGG | 9 cut(s) | 96, 1652, 1748, 3164, 4901, 4932, 5040, 5631, 5793 |
| BseDI | CCNNGG | 8 cut(s) | 94, 115, 2609, 2610, 3870, 4792, 4899, 5477 |
| BseJI | GATNNNNATC | 2 cut(s) | 2021, 5394 |
| BseMI | GCAATG | 2 cut(s) | 523, 5538 |
| BseRI | GAGGAG | 8 cut(s) | 118, 1385, 2866, 4247, 5535, 5586, 5631, 5874 |
| BseSI | GKGCMC | 3 cut(s) | 611, 4900, 5527 |
| BseYI | CCCAGC | 2 cut(s) | 3714, 4471 |
| BsgI | GTGCAG | 2 cut(s) | 1472, 5793 |
| BshFI | GGCC | 4 cut(s) | 2348, 2651, 4088, 4647 |
| BshNI | GGYRCC | 1 cut(s) | 4168 |
| BshTI | ACCGGT | 1 cut(s) | 4868 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1546, 4029, 4744, 5476, 5527 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| BsiSI | CCGG | 7 cut(s) | 115, 210, 332, 2611, 2837, 4869, 5636 |
| BslFI | GGGAC | 3 cut(s) | 133, 2529, 5028 |
| BsmFI | GGGAC | 3 cut(s) | 133, 2529, 5028 |
| BsmI | GAATGC | 4 cut(s) | 3002, 3632, 5098, 5431 |
| BsnI | GGCC | 4 cut(s) | 2348, 2651, 4088, 4647 |
| Bso31I | GGTCTC | 1 cut(s) | 632 |
| BsoBI | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| Bsp119I | TTCGAA | 2 cut(s) | 1526, 5329 |
| Bsp1286I | GDGCHC | 8 cut(s) | 611, 1546, 4029, 4674, 4744, 4900, 5476, 5527 |
| Bsp1407I | TGTACA | 4 cut(s) | 1465, 2072, 3427, 3808 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 4668, 4989 |
| BspANI | GGCC | 4 cut(s) | 2348, 2651, 4088, 4647 |
| BspHI | TCATGA | 3 cut(s) | 2275, 3940, 5341 |
| BspLI | GGNNCC | 9 cut(s) | 180, 1446, 2858, 3910, 4170, 4686, 5044, 5595, 5640 |
| BspMAI | CTGCAG | 5 cut(s) | 514, 559, 1111, 1928, 5649 |
| BspMI | ACCTGC | 6 cut(s) | 196, 517, 562, 772, 871, 5096 |
| BspOI | GCTAGC | 1 cut(s) | 5501 |
| BspQI | GCTCTTC | 1 cut(s) | 2973 |
| BspT104I | TTCGAA | 2 cut(s) | 1526, 5329 |
| BspT107I | GGYRCC | 1 cut(s) | 4168 |
| BspTNI | GGTCTC | 1 cut(s) | 632 |
| BsrBI | CCGCTC | 3 cut(s) | 1674, 2148, 5056 |
| BsrDI | GCAATG | 2 cut(s) | 523, 5538 |
| BsrFI | RCCGGY | 1 cut(s) | 4868 |
| BsrGI | TGTACA | 4 cut(s) | 1465, 2072, 3427, 3808 |
| BssAI | RCCGGY | 1 cut(s) | 4868 |
| BssECI | CCNNGG | 8 cut(s) | 94, 115, 2609, 2610, 3870, 4792, 4899, 5477 |
| BssNI | GRCGYC | 1 cut(s) | 2180 |
| BssSI | CACGAG | 1 cut(s) | 3993 |
| BssT1I | CCWWGG | 3 cut(s) | 3870, 4792, 5477 |
| Bst2BI | CACGAG | 1 cut(s) | 3993 |
| Bst2UI | CCWGG | 9 cut(s) | 96, 1652, 1748, 3164, 4901, 4932, 5040, 5631, 5793 |
| Bst6I | CTCTTC | 9 cut(s) | 357, 465, 1499, 2415, 2973, 3146, 3312, 3329, 5845 |
| BstACI | GRCGYC | 1 cut(s) | 2180 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2164 |
| BstAUI | TGTACA | 4 cut(s) | 1465, 2072, 3427, 3808 |
| BstBAI | YACGTR | 3 cut(s) | 1233, 1919, 2008 |
| BstBI | TTCGAA | 2 cut(s) | 1526, 5329 |
| BstHHI | GCGC | 1 cut(s) | 4627 |
| BstNI | CCWGG | 9 cut(s) | 96, 1652, 1748, 3164, 4901, 4932, 5040, 5631, 5793 |
| BstNSI | RCATGY | 5 cut(s) | 1131, 2357, 4590, 4755, 5019 |
| BstSFI | CTRYAG | 8 cut(s) | 510, 555, 1107, 1134, 1924, 2130, 3261, 5645 |
| BstSLI | GKGCMC | 3 cut(s) | 611, 4900, 5527 |
| BstV2I | GAAGAC | 5 cut(s) | 272, 1732, 2403, 4116, 5261 |
| BstX2I | RGATCY | 2 cut(s) | 50, 4874 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1440, 1633, 2789, 5087 |
| BstYI | RGATCY | 2 cut(s) | 50, 4874 |
| Bsu36I | CCTNAGG | 2 cut(s) | 5467, 5652 |
| BsuI | GTATCC | 2 cut(s) | 286, 4189 |
| BsuRI | GGCC | 4 cut(s) | 2348, 2651, 4088, 4647 |
| BtgZI | GCGATG | 3 cut(s) | 1974, 2571, 4370 |
| BtsI | GCAGTG | 5 cut(s) | 1104, 2162, 2224, 2380, 5962 |
| BveI | ACCTGC | 6 cut(s) | 196, 517, 562, 772, 871, 5096 |
| CaiI | CAGNNNCTG | 3 cut(s) | 152, 4988, 5039 |
| CciI | TCATGA | 3 cut(s) | 2275, 3940, 5341 |
| CfoI | GCGC | 1 cut(s) | 4627 |
| Cfr10I | RCCGGY | 1 cut(s) | 4868 |
| Cfr13I | GGNCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| Cfr9I | CCCGGG | 1 cut(s) | 2610 |
| CseI | GACGC | 2 cut(s) | 2169, 4365 |
| CsiI | ACCWGGT | 1 cut(s) | 5038 |
| CspAI | ACCGGT | 1 cut(s) | 4868 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4254, 4289 |
| DraI | TTTAAA | 2 cut(s) | 1728, 2871 |
| Eam1104I | CTCTTC | 9 cut(s) | 357, 465, 1499, 2415, 2973, 3146, 3312, 3329, 5845 |
| EarI | CTCTTC | 9 cut(s) | 357, 465, 1499, 2415, 2973, 3146, 3312, 3329, 5845 |
| EciI | GGCGGA | 1 cut(s) | 2613 |
| Ecl136II | GAGCTC | 2 cut(s) | 1544, 5474 |
| Eco130I | CCWWGG | 3 cut(s) | 3870, 4792, 5477 |
| Eco147I | AGGCCT | 1 cut(s) | 2651 |
| Eco24I | GRGCYC | 3 cut(s) | 1546, 4674, 5476 |
| Eco31I | GGTCTC | 1 cut(s) | 632 |
| Eco32I | GATATC | 1 cut(s) | 3370 |
| Eco47I | GGWCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| Eco53kI | GAGCTC | 2 cut(s) | 1544, 5474 |
| Eco57I | CTGAAG | 9 cut(s) | 177, 291, 1785, 2469, 2556, 5331, 5540, 5591, 5658 |
| Eco72I | CACGTG | 2 cut(s) | 1233, 1919 |
| Eco81I | CCTNAGG | 2 cut(s) | 5467, 5652 |
| Eco88I | CYCGRG | 3 cut(s) | 2610, 4211, 5294 |
| EcoICRI | GAGCTC | 2 cut(s) | 1544, 5474 |
| EcoRI | GAATTC | 2 cut(s) | 226, 2279 |
| EcoRII | CCWGG | 9 cut(s) | 94, 1650, 1746, 3162, 4899, 4930, 5038, 5629, 5791 |
| EcoRV | GATATC | 1 cut(s) | 3370 |
| EcoT14I | CCWWGG | 3 cut(s) | 3870, 4792, 5477 |
| EcoT22I | ATGCAT | 7 cut(s) | 664, 973, 1129, 1606, 4753, 4909, 5017 |
| EcoT38I | GRGCYC | 3 cut(s) | 1546, 4674, 5476 |
| ErhI | CCWWGG | 3 cut(s) | 3870, 4792, 5477 |
| FaqI | GGGAC | 3 cut(s) | 133, 2529, 5028 |
| FauI | CCCGC | 2 cut(s) | 1667, 4675 |
| FbaI | TGATCA | 3 cut(s) | 1153, 4411, 4576 |
| FblI | GTMKAC | 3 cut(s) | 368, 856, 2335 |
| FriOI | GRGCYC | 3 cut(s) | 1546, 4674, 5476 |
| GlaI | GCGC | 1 cut(s) | 4626 |
| GsaI | CCCAGC | 2 cut(s) | 3718, 4475 |
| GsuI | CTGGAG | 8 cut(s) | 129, 1493, 1655, 2211, 2687, 3185, 3662, 5240 |
| HaeIII | GGCC | 4 cut(s) | 2348, 2651, 4088, 4647 |
| HapII | CCGG | 7 cut(s) | 115, 210, 332, 2611, 2837, 4869, 5636 |
| HgaI | GACGC | 2 cut(s) | 2169, 4365 |
| HhaI | GCGC | 1 cut(s) | 4627 |
| Hin1I | GRCGYC | 1 cut(s) | 2180 |
| Hin6I | GCGC | 1 cut(s) | 4625 |
| HinP1I | GCGC | 1 cut(s) | 4625 |
| HincII | GTYRAC | 4 cut(s) | 369, 586, 1255, 5061 |
| HindII | GTYRAC | 4 cut(s) | 369, 586, 1255, 5061 |
| HindIII | AAGCTT | 4 cut(s) | 731, 1040, 3422, 5889 |
| HpaII | CCGG | 7 cut(s) | 115, 210, 332, 2611, 2837, 4869, 5636 |
| Hpy99I | CGWCG | 2 cut(s) | 5855, 6002 |
| HpyCH4IV | ACGT | 8 cut(s) | 1158, 1232, 1320, 1593, 1918, 2007, 3831, 4095 |
| HpySE526I | ACGT | 8 cut(s) | 1158, 1232, 1320, 1593, 1918, 2007, 3831, 4095 |
| Hsp92I | GRCGYC | 1 cut(s) | 2180 |
| HspAI | GCGC | 1 cut(s) | 4625 |
| Ksp22I | TGATCA | 3 cut(s) | 1153, 4411, 4576 |
| LguI | GCTCTTC | 1 cut(s) | 2973 |
| MabI | ACCWGGT | 1 cut(s) | 5038 |
| MaeII | ACGT | 8 cut(s) | 1158, 1232, 1320, 1593, 1918, 2007, 3831, 4095 |
| MbiI | CCGCTC | 3 cut(s) | 1674, 2148, 5056 |
| MfeI | CAATTG | 1 cut(s) | 4509 |
| MflI | RGATCY | 2 cut(s) | 50, 4874 |
| MhlI | GDGCHC | 8 cut(s) | 611, 1546, 4029, 4674, 4744, 4900, 5476, 5527 |
| MlyI | GAGTC | 8 cut(s) | 374, 1483, 1897, 2036, 2434, 2551, 2690, 3163 |
| MmeI | TCCRAC | 8 cut(s) | 1890, 2914, 3002, 3674, 4756, 5775, 5786, 5891 |
| Mph1103I | ATGCAT | 7 cut(s) | 664, 973, 1129, 1606, 4753, 4909, 5017 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1770, 5429 |
| MslI | CAYNNNNRTG | 9 cut(s) | 1195, 2217, 2927, 3585, 3771, 4572, 4826, 5001, 5085 |
| MspA1I | CMGCKG | 3 cut(s) | 1471, 4667, 5906 |
| MspI | CCGG | 7 cut(s) | 115, 210, 332, 2611, 2837, 4869, 5636 |
| MunI | CAATTG | 1 cut(s) | 4509 |
| Mva1269I | GAATGC | 4 cut(s) | 3002, 3632, 5098, 5431 |
| MvaI | CCWGG | 9 cut(s) | 96, 1652, 1748, 3164, 4901, 4932, 5040, 5631, 5793 |
| NciI | CCSGG | 3 cut(s) | 116, 2611, 2612 |
| NheI | GCTAGC | 1 cut(s) | 5497 |
| NlaIV | GGNNCC | 9 cut(s) | 180, 1446, 2858, 3910, 4170, 4686, 5044, 5595, 5640 |
| NmeAIII | GCCGAG | 1 cut(s) | 5380 |
| NmuCI | GTSAC | 9 cut(s) | 1321, 1580, 2599, 2614, 2682, 3269, 4121, 4185, 4819 |
| NsiI | ATGCAT | 7 cut(s) | 664, 973, 1129, 1606, 4753, 4909, 5017 |
| NspI | RCATGY | 5 cut(s) | 1131, 2357, 4590, 4755, 5019 |
| NspV | TTCGAA | 2 cut(s) | 1526, 5329 |
| OliI | CACNNNNGTG | 2 cut(s) | 2217, 4826 |
| PaeI | GCATGC | 2 cut(s) | 2357, 4755 |
| PaeR7I | CTCGAG | 1 cut(s) | 5294 |
| PagI | TCATGA | 3 cut(s) | 2275, 3940, 5341 |
| PaqCI | CACCTGC | 5 cut(s) | 196, 562, 772, 871, 5096 |
| PceI | AGGCCT | 1 cut(s) | 2651 |
| PciI | ACATGT | 1 cut(s) | 4586 |
| PciSI | GCTCTTC | 1 cut(s) | 2973 |
| PctI | GAATGC | 4 cut(s) | 3002, 3632, 5098, 5431 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1770, 5429 |
| PfoI | TCCNGGA | 2 cut(s) | 1650, 3162 |
| PinAI | ACCGGT | 1 cut(s) | 4868 |
| PleI | GAGTC | 8 cut(s) | 373, 1483, 1896, 2035, 2433, 2550, 2689, 3162 |
| PmaCI | CACGTG | 2 cut(s) | 1233, 1919 |
| PmlI | CACGTG | 2 cut(s) | 1233, 1919 |
| PpsI | GAGTC | 8 cut(s) | 373, 1483, 1896, 2035, 2433, 2550, 2689, 3162 |
| Ppu21I | YACGTR | 3 cut(s) | 1233, 1919, 2008 |
| PscI | ACATGT | 1 cut(s) | 4586 |
| PshBI | ATTAAT | 2 cut(s) | 3282, 3699 |
| PsiI | TTATAA | 1 cut(s) | 5405 |
| Psp124BI | GAGCTC | 2 cut(s) | 1546, 5476 |
| Psp1406I | AACGTT | 1 cut(s) | 3831 |
| Psp6I | CCWGG | 9 cut(s) | 94, 1650, 1746, 3162, 4899, 4930, 5038, 5629, 5791 |
| PspCI | CACGTG | 2 cut(s) | 1233, 1919 |
| PspFI | CCCAGC | 2 cut(s) | 3714, 4471 |
| PspGI | CCWGG | 9 cut(s) | 94, 1650, 1746, 3162, 4899, 4930, 5038, 5629, 5791 |
| PspN4I | GGNNCC | 9 cut(s) | 180, 1446, 2858, 3910, 4170, 4686, 5044, 5595, 5640 |
| PspPI | GGNCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3520, 3552 |
| PstI | CTGCAG | 5 cut(s) | 514, 559, 1111, 1928, 5649 |
| PstNI | CAGNNNCTG | 3 cut(s) | 152, 4988, 5039 |
| PsuI | RGATCY | 2 cut(s) | 50, 4874 |
| PvuII | CAGCTG | 3 cut(s) | 1471, 4667, 5906 |
| RseI | CAYNNNNRTG | 9 cut(s) | 1195, 2217, 2927, 3585, 3771, 4572, 4826, 5001, 5085 |
| SacI | GAGCTC | 2 cut(s) | 1546, 5476 |
| SalI | GTCGAC | 1 cut(s) | 367 |
| SapI | GCTCTTC | 1 cut(s) | 2973 |
| Sau96I | GGNCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| SbfI | CCTGCAGG | 1 cut(s) | 514 |
| ScaI | AGTACT | 1 cut(s) | 3550 |
| SchI | GAGTC | 8 cut(s) | 374, 1483, 1897, 2036, 2434, 2551, 2690, 3163 |
| SdaI | CCTGCAGG | 1 cut(s) | 514 |
| SduI | GDGCHC | 8 cut(s) | 611, 1546, 4029, 4674, 4744, 4900, 5476, 5527 |
| SexAI | ACCWGGT | 1 cut(s) | 5038 |
| SfcI | CTRYAG | 8 cut(s) | 510, 555, 1107, 1134, 1924, 2130, 3261, 5645 |
| Sfr274I | CTCGAG | 1 cut(s) | 5294 |
| SfuI | TTCGAA | 2 cut(s) | 1526, 5329 |
| SinI | GGWCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| SlaI | CTCGAG | 1 cut(s) | 5294 |
| SmaI | CCCGGG | 1 cut(s) | 2612 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 1195, 2217, 2927, 3585, 3771, 4572, 4826, 5001, 5085 |
| SmlI | CTYRAG | 5 cut(s) | 431, 3552, 5294, 5886, 5950 |
| SmoI | CTYRAG | 5 cut(s) | 431, 3552, 5294, 5886, 5950 |
| SpeI | ACTAGT | 6 cut(s) | 478, 593, 803, 902, 3235, 3497 |
| SphI | GCATGC | 2 cut(s) | 2357, 4755 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 514 |
| SseBI | AGGCCT | 1 cut(s) | 2651 |
| SspI | AATATT | 2 cut(s) | 1786, 4639 |
| SstI | GAGCTC | 2 cut(s) | 1546, 5476 |
| StuI | AGGCCT | 1 cut(s) | 2651 |
| StyI | CCWWGG | 3 cut(s) | 3870, 4792, 5477 |
| TaiI | ACGT | 8 cut(s) | 1161, 1235, 1323, 1596, 1921, 2010, 3834, 4098 |
| TaqII | GACCGA | 1 cut(s) | 656 |
| TatI | WGTACW | 8 cut(s) | 1465, 2061, 2072, 3427, 3548, 3808, 5314, 5444 |
| TauI | GCSGC | 4 cut(s) | 504, 2119, 4088, 4142 |
| TseFI | GTSAC | 9 cut(s) | 1321, 1580, 2599, 2614, 2682, 3269, 4121, 4185, 4819 |
| Tsp45I | GTSAC | 9 cut(s) | 1321, 1580, 2599, 2614, 2682, 3269, 4121, 4185, 4819 |
| TspGWI | ACGGA | 5 cut(s) | 650, 959, 3065, 3556, 5162 |
| TspMI | CCCGGG | 1 cut(s) | 2610 |
| VneI | GTGCAC | 1 cut(s) | 5523 |
| VpaK11BI | GGWCC | 9 cut(s) | 252, 1346, 1817, 3073, 3543, 4300, 4685, 5042, 5633 |
| VspI | ATTAAT | 2 cut(s) | 3282, 3699 |
| XbaI | TCTAGA | 2 cut(s) | 1546, 3107 |
| XceI | RCATGY | 5 cut(s) | 1131, 2357, 4590, 4755, 5019 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2436, 3553 |
| XhoI | CTCGAG | 1 cut(s) | 5294 |
| XmaI | CCCGGG | 1 cut(s) | 2610 |
| XmaJI | CCTAGG | 1 cut(s) | 4792 |
| XmiI | GTMKAC | 3 cut(s) | 368, 856, 2335 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1770, 5429 |
| ZrmI | AGTACT | 1 cut(s) | 3550 |
| Zsp2I | ATGCAT | 7 cut(s) | 664, 973, 1129, 1606, 4753, 4909, 5017 |