Helicase protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 223 |
| Acc36I | ACCTGC | 1 cut(s) | 2726 |
| Acc65I | GGTACC | 3 cut(s) | 3107, 3287, 4217 |
| AccB1I | GGYRCC | 5 cut(s) | 3107, 3208, 3287, 4037, 4217 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4493 |
| AccI | GTMKAC | 4 cut(s) | 2392, 3082, 3544, 4012 |
| AccII | CGCG | 1 cut(s) | 3671 |
| AciI | CCGC | 3 cut(s) | 1199, 2785, 3669 |
| AclWI | GGATC | 5 cut(s) | 1507, 1738, 2709, 4491, 4504 |
| AcoI | YGGCCR | 1 cut(s) | 2853 |
| AcuI | CTGAAG | 7 cut(s) | 254, 1269, 1668, 1779, 1830, 1920, 4428 |
| AdeI | CACNNNGTG | 2 cut(s) | 3311, 3773 |
| AflIII | ACRYGT | 1 cut(s) | 318 |
| AgeI | ACCGGT | 1 cut(s) | 4220 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4322 |
| AjnI | CCWGG | 7 cut(s) | 642, 2037, 2962, 3180, 3424, 3642, 3892 |
| AleI | CACNNNNGTG | 1 cut(s) | 851 |
| Alw26I | GTCTC | 9 cut(s) | 378, 477, 529, 1463, 1694, 2517, 2591, 3180, 3642 |
| AlwI | GGATC | 5 cut(s) | 1507, 1738, 2709, 4491, 4504 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 113, 340, 2065 |
| Ama87I | CYCGRG | 1 cut(s) | 2691 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3134, 3166, 3596, 3628, 4064, 4096 |
| AseI | ATTAAT | 1 cut(s) | 2672 |
| AsiGI | ACCGGT | 1 cut(s) | 4220 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 135, 554, 1287, 3189, 3651, 4119 |
| Asp718I | GGTACC | 3 cut(s) | 3107, 3287, 4217 |
| AspLEI | GCGC | 4 cut(s) | 1040, 3673, 4141, 4458 |
| AspS9I | GGNCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| AsuC2I | CCSGG | 2 cut(s) | 937, 3206 |
| AsuHPI | GGTGA | 9 cut(s) | 1868, 1952, 2040, 2984, 3156, 3446, 3618, 3914, 4355 |
| AsuII | TTCGAA | 1 cut(s) | 679 |
| AvaI | CYCGRG | 1 cut(s) | 2691 |
| AvaII | GGWCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| AxyI | CCTNAGG | 1 cut(s) | 1924 |
| BaeGI | GKGCMC | 2 cut(s) | 848, 3988 |
| BalI | TGGCCA | 1 cut(s) | 2855 |
| BamHI | GGATCC | 1 cut(s) | 4496 |
| BanI | GGYRCC | 5 cut(s) | 3107, 3208, 3287, 4037, 4217 |
| BanII | GRGCYC | 1 cut(s) | 877 |
| BbsI | GAAGAC | 5 cut(s) | 765, 1259, 2256, 3496, 3964 |
| BciT130I | CCWGG | 7 cut(s) | 644, 2039, 2964, 3182, 3426, 3644, 3894 |
| BciVI | GTATCC | 1 cut(s) | 1747 |
| BclI | TGATCA | 4 cut(s) | 1126, 3247, 3709, 4177 |
| BcnI | CCSGG | 2 cut(s) | 937, 3206 |
| BcoDI | GTCTC | 9 cut(s) | 378, 477, 529, 1463, 1694, 2517, 2591, 3180, 3642 |
| BfaI | CTAG | 6 cut(s) | 1334, 1403, 1613, 2834, 3918, 4531 |
| BfoI | RGCGCY | 3 cut(s) | 1041, 4142, 4459 |
| BfuAI | ACCTGC | 1 cut(s) | 2726 |
| BfuI | GTATCC | 1 cut(s) | 1747 |
| BglII | AGATCT | 2 cut(s) | 1656, 2411 |
| Bme1390I | CCNGG | 9 cut(s) | 644, 937, 2039, 2964, 3182, 3206, 3426, 3644, 3894 |
| Bme18I | GGWCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4322 |
| BmeT110I | CYCGRG | 1 cut(s) | 2691 |
| BmgT120I | GGNCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| BmrFI | CCNGG | 9 cut(s) | 644, 937, 2039, 2964, 3182, 3206, 3426, 3644, 3894 |
| BmsI | GCATC | 9 cut(s) | 100, 289, 415, 793, 898, 1309, 2155, 2767, 4412 |
| BpiI | GAAGAC | 5 cut(s) | 765, 1259, 2256, 3496, 3964 |
| BpmI | CTGGAG | 9 cut(s) | 1005, 1246, 1437, 1836, 2772, 3123, 3585, 4053, 4266 |
| Bpu14I | TTCGAA | 1 cut(s) | 679 |
| BpuEI | CTTGAG | 4 cut(s) | 53, 446, 782, 2492 |
| BpuMI | CCSGG | 2 cut(s) | 937, 3206 |
| BsaAI | YACGTR | 1 cut(s) | 319 |
| BsaI | GGTCTC | 1 cut(s) | 1463 |
| BsaWI | WCCGGW | 1 cut(s) | 4220 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 1578, 1608, 2944, 2974, 3406, 3436, 3874, 3904 |
| Bse118I | RCCGGY | 1 cut(s) | 4220 |
| Bse21I | CCTNAGG | 1 cut(s) | 1924 |
| Bse3DI | GCAATG | 4 cut(s) | 227, 333, 1635, 2289 |
| BseBI | CCWGG | 7 cut(s) | 644, 2039, 2964, 3182, 3426, 3644, 3894 |
| BseGI | GGATG | 5 cut(s) | 55, 526, 1219, 4066, 4155 |
| BseMI | GCAATG | 4 cut(s) | 227, 333, 1635, 2289 |
| BseMII | CTCAG | 7 cut(s) | 53, 120, 906, 1059, 1938, 1988, 2415 |
| BseRI | GAGGAG | 7 cut(s) | 3004, 3408, 3411, 3466, 3934, 4278, 4293 |
| BseSI | GKGCMC | 2 cut(s) | 848, 3988 |
| BseYI | CCCAGC | 1 cut(s) | 4135 |
| BsgI | GTGCAG | 2 cut(s) | 906, 2169 |
| Bsh1236I | CGCG | 1 cut(s) | 3671 |
| BshNI | GGYRCC | 5 cut(s) | 3107, 3208, 3287, 4037, 4217 |
| BshTI | ACCGGT | 1 cut(s) | 4220 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2691 |
| BsiSI | CCGG | 4 cut(s) | 936, 3206, 4221, 4377 |
| BslFI | GGGAC | 3 cut(s) | 987, 3255, 4310 |
| BsmAI | GTCTC | 9 cut(s) | 378, 477, 529, 1463, 1694, 2517, 2591, 3180, 3642 |
| BsmBI | CGTCTC | 2 cut(s) | 3180, 3642 |
| BsmFI | GGGAC | 3 cut(s) | 987, 3255, 4310 |
| BsmI | GAATGC | 2 cut(s) | 1289, 1885 |
| Bso31I | GGTCTC | 1 cut(s) | 1463 |
| BsoBI | CYCGRG | 1 cut(s) | 2691 |
| Bsp119I | TTCGAA | 1 cut(s) | 679 |
| Bsp1286I | GDGCHC | 3 cut(s) | 848, 877, 3988 |
| Bsp19I | CCATGG | 1 cut(s) | 2119 |
| BspACI | CCGC | 3 cut(s) | 1199, 2785, 3669 |
| BspCNI | CTCAG | 7 cut(s) | 52, 119, 907, 1060, 1937, 1987, 2414 |
| BspFNI | CGCG | 1 cut(s) | 3671 |
| BspMAI | CTGCAG | 9 cut(s) | 223, 336, 370, 1429, 2008, 2869, 3262, 3724, 4192 |
| BspMI | ACCTGC | 1 cut(s) | 2726 |
| BspPI | GGATC | 5 cut(s) | 1507, 1738, 2709, 4491, 4504 |
| BspQI | GCTCTTC | 1 cut(s) | 4398 |
| BspT104I | TTCGAA | 1 cut(s) | 679 |
| BspT107I | GGYRCC | 5 cut(s) | 3107, 3208, 3287, 4037, 4217 |
| BspTNI | GGTCTC | 1 cut(s) | 1463 |
| BsrDI | GCAATG | 4 cut(s) | 227, 333, 1635, 2289 |
| BsrFI | RCCGGY | 1 cut(s) | 4220 |
| BssAI | RCCGGY | 1 cut(s) | 4220 |
| BssT1I | CCWWGG | 7 cut(s) | 1864, 2073, 2119, 3034, 3496, 3964, 4320 |
| Bst2UI | CCWGG | 7 cut(s) | 644, 2039, 2964, 3182, 3426, 3644, 3894 |
| Bst4CI | ACNGT | 8 cut(s) | 1351, 1445, 1688, 1792, 2045, 2453, 3575, 4367 |
| Bst6I | CTCTTC | 8 cut(s) | 9, 624, 2445, 2482, 3022, 3484, 3952, 4398 |
| BstBAI | YACGTR | 1 cut(s) | 319 |
| BstBI | TTCGAA | 1 cut(s) | 679 |
| BstC8I | GCNNGC | 7 cut(s) | 192, 823, 994, 2176, 2652, 2872, 4389 |
| BstDEI | CTNAG | 8 cut(s) | 39, 106, 915, 1068, 1924, 1974, 1993, 2401 |
| BstDSI | CCRYGG | 1 cut(s) | 2119 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2636 |
| BstF5I | GGATG | 5 cut(s) | 55, 526, 1219, 4066, 4155 |
| BstFNI | CGCG | 1 cut(s) | 3671 |
| BstH2I | RGCGCY | 3 cut(s) | 1041, 4142, 4459 |
| BstHHI | GCGC | 4 cut(s) | 1040, 3673, 4141, 4458 |
| BstMAI | GTCTC | 9 cut(s) | 378, 477, 529, 1463, 1694, 2517, 2591, 3180, 3642 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1046, 2105, 4138 |
| BstNI | CCWGG | 7 cut(s) | 644, 2039, 2964, 3182, 3426, 3644, 3894 |
| BstNSI | RCATGY | 2 cut(s) | 996, 1595 |
| BstSCI | CCNGG | 9 cut(s) | 642, 935, 2037, 2962, 3180, 3204, 3424, 3642, 3892 |
| BstSLI | GKGCMC | 2 cut(s) | 848, 3988 |
| BstUI | CGCG | 1 cut(s) | 3671 |
| BstV2I | GAAGAC | 5 cut(s) | 765, 1259, 2256, 3496, 3964 |
| BstX2I | RGATCY | 5 cut(s) | 1512, 1656, 2411, 2701, 4496 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2120 |
| BstYI | RGATCY | 5 cut(s) | 1512, 1656, 2411, 2701, 4496 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1924 |
| BsuI | GTATCC | 1 cut(s) | 1747 |
| BtgI | CCRYGG | 1 cut(s) | 2119 |
| BtgZI | GCGATG | 1 cut(s) | 1894 |
| BtsCI | GGATG | 5 cut(s) | 55, 526, 1219, 4066, 4155 |
| BtsI | GCAGTG | 2 cut(s) | 341, 1329 |
| BtsIMutI | CAGTG | 8 cut(s) | 341, 1329, 1450, 1461, 1560, 2090, 2894, 2924 |
| BveI | ACCTGC | 1 cut(s) | 2726 |
| Cac8I | GCNNGC | 7 cut(s) | 192, 823, 994, 2176, 2652, 2872, 4389 |
| CaiI | CAGNNNCTG | 3 cut(s) | 113, 340, 2065 |
| CfoI | GCGC | 4 cut(s) | 1040, 3673, 4141, 4458 |
| Cfr10I | RCCGGY | 1 cut(s) | 4220 |
| Cfr13I | GGNCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| CseI | GACGC | 2 cut(s) | 213, 1494 |
| CspAI | ACCGGT | 1 cut(s) | 4220 |
| DdeI | CTNAG | 8 cut(s) | 39, 106, 915, 1068, 1924, 1974, 1993, 2401 |
| DraIII | CACNNNGTG | 2 cut(s) | 3311, 3773 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 223 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4322 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 223 |
| EaeI | YGGCCR | 1 cut(s) | 2853 |
| Eam1104I | CTCTTC | 8 cut(s) | 9, 624, 2445, 2482, 3022, 3484, 3952, 4398 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4322 |
| EarI | CTCTTC | 8 cut(s) | 9, 624, 2445, 2482, 3022, 3484, 3952, 4398 |
| Eco130I | CCWWGG | 7 cut(s) | 1864, 2073, 2119, 3034, 3496, 3964, 4320 |
| Eco24I | GRGCYC | 1 cut(s) | 877 |
| Eco31I | GGTCTC | 1 cut(s) | 1463 |
| Eco32I | GATATC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| Eco57I | CTGAAG | 7 cut(s) | 254, 1269, 1668, 1779, 1830, 1920, 4428 |
| Eco81I | CCTNAGG | 1 cut(s) | 1924 |
| Eco88I | CYCGRG | 1 cut(s) | 2691 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2636 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| EcoRI | GAATTC | 2 cut(s) | 3805, 4273 |
| EcoRII | CCWGG | 7 cut(s) | 642, 2037, 2962, 3180, 3424, 3642, 3892 |
| EcoRV | GATATC | 1 cut(s) | 204 |
| EcoT14I | CCWWGG | 7 cut(s) | 1864, 2073, 2119, 3034, 3496, 3964, 4320 |
| EcoT22I | ATGCAT | 1 cut(s) | 786 |
| EcoT38I | GRGCYC | 1 cut(s) | 877 |
| ErhI | CCWWGG | 7 cut(s) | 1864, 2073, 2119, 3034, 3496, 3964, 4320 |
| Esp3I | CGTCTC | 2 cut(s) | 3180, 3642 |
| FaqI | GGGAC | 3 cut(s) | 987, 3255, 4310 |
| FauI | CCCGC | 1 cut(s) | 3676 |
| FauNDI | CATATG | 1 cut(s) | 2679 |
| FbaI | TGATCA | 4 cut(s) | 1126, 3247, 3709, 4177 |
| FblI | GTMKAC | 4 cut(s) | 2392, 3082, 3544, 4012 |
| FokI | GGATG | 5 cut(s) | 42, 533, 1226, 4073, 4162 |
| FriOI | GRGCYC | 1 cut(s) | 877 |
| FspBI | CTAG | 6 cut(s) | 1334, 1403, 1613, 2834, 3918, 4531 |
| GlaI | GCGC | 4 cut(s) | 1039, 3672, 4140, 4457 |
| GsaI | CCCAGC | 1 cut(s) | 4139 |
| GsuI | CTGGAG | 9 cut(s) | 1005, 1246, 1437, 1836, 2772, 3123, 3585, 4053, 4266 |
| HaeII | RGCGCY | 3 cut(s) | 1041, 4142, 4459 |
| HapII | CCGG | 4 cut(s) | 936, 3206, 4221, 4377 |
| HgaI | GACGC | 2 cut(s) | 213, 1494 |
| HhaI | GCGC | 4 cut(s) | 1040, 3673, 4141, 4458 |
| Hin6I | GCGC | 4 cut(s) | 1038, 3671, 4139, 4456 |
| HinP1I | GCGC | 4 cut(s) | 1038, 3671, 4139, 4456 |
| HincII | GTYRAC | 2 cut(s) | 2198, 2782 |
| HindII | GTYRAC | 2 cut(s) | 2198, 2782 |
| HindIII | AAGCTT | 1 cut(s) | 2172 |
| HpaII | CCGG | 4 cut(s) | 936, 3206, 4221, 4377 |
| HphI | GGTGA | 9 cut(s) | 1868, 1952, 2040, 2984, 3156, 3446, 3618, 3914, 4355 |
| Hpy99I | CGWCG | 1 cut(s) | 3637 |
| HpyCH4III | ACNGT | 8 cut(s) | 1351, 1445, 1688, 1792, 2045, 2453, 3575, 4367 |
| HpyCH4IV | ACGT | 1 cut(s) | 318 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1046, 2105, 4138 |
| HpyF3I | CTNAG | 8 cut(s) | 39, 106, 915, 1068, 1924, 1974, 1993, 2401 |
| HpySE526I | ACGT | 1 cut(s) | 318 |
| HspAI | GCGC | 4 cut(s) | 1038, 3671, 4139, 4456 |
| KpnI | GGTACC | 3 cut(s) | 3111, 3291, 4221 |
| Ksp22I | TGATCA | 4 cut(s) | 1126, 3247, 3709, 4177 |
| LguI | GCTCTTC | 1 cut(s) | 4398 |
| LmnI | GCTCC | 3 cut(s) | 1456, 2926, 4291 |
| LweI | GCATC | 9 cut(s) | 100, 289, 415, 793, 898, 1309, 2155, 2767, 4412 |
| MaeI | CTAG | 6 cut(s) | 1334, 1403, 1613, 2834, 3918, 4531 |
| MaeII | ACGT | 1 cut(s) | 318 |
| MfeI | CAATTG | 3 cut(s) | 292, 590, 2534 |
| MflI | RGATCY | 5 cut(s) | 1512, 1656, 2411, 2701, 4496 |
| MhlI | GDGCHC | 3 cut(s) | 848, 877, 3988 |
| MlsI | TGGCCA | 1 cut(s) | 2855 |
| MluNI | TGGCCA | 1 cut(s) | 2855 |
| MlyI | GAGTC | 6 cut(s) | 380, 674, 926, 1841, 2201, 2246 |
| MmeI | TCCRAC | 2 cut(s) | 194, 2632 |
| Mox20I | TGGCCA | 1 cut(s) | 2855 |
| Mph1103I | ATGCAT | 1 cut(s) | 786 |
| MroXI | GAANNNNTTC | 6 cut(s) | 135, 554, 1287, 3189, 3651, 4119 |
| MscI | TGGCCA | 1 cut(s) | 2855 |
| Msp20I | TGGCCA | 1 cut(s) | 2855 |
| MspA1I | CMGCKG | 2 cut(s) | 811, 965 |
| MspI | CCGG | 4 cut(s) | 936, 3206, 4221, 4377 |
| MspR9I | CCNGG | 9 cut(s) | 644, 937, 2039, 2964, 3182, 3206, 3426, 3644, 3894 |
| MunI | CAATTG | 3 cut(s) | 292, 590, 2534 |
| Mva1269I | GAATGC | 2 cut(s) | 1289, 1885 |
| MvaI | CCWGG | 7 cut(s) | 644, 2039, 2964, 3182, 3426, 3644, 3894 |
| MvnI | CGCG | 1 cut(s) | 3671 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1046, 2105, 4138 |
| NciI | CCSGG | 2 cut(s) | 937, 3206 |
| NcoI | CCATGG | 1 cut(s) | 2119 |
| NdeI | CATATG | 1 cut(s) | 2679 |
| NsiI | ATGCAT | 1 cut(s) | 786 |
| NspI | RCATGY | 2 cut(s) | 996, 1595 |
| NspV | TTCGAA | 1 cut(s) | 679 |
| OliI | CACNNNNGTG | 1 cut(s) | 851 |
| PaeI | GCATGC | 1 cut(s) | 996 |
| PciSI | GCTCTTC | 1 cut(s) | 4398 |
| PctI | GAATGC | 2 cut(s) | 1289, 1885 |
| PdmI | GAANNNNTTC | 6 cut(s) | 135, 554, 1287, 3189, 3651, 4119 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4493 |
| PfoI | TCCNGGA | 2 cut(s) | 3180, 3642 |
| PinAI | ACCGGT | 1 cut(s) | 4220 |
| PleI | GAGTC | 6 cut(s) | 379, 673, 925, 1840, 2201, 2246 |
| PpsI | GAGTC | 6 cut(s) | 379, 673, 925, 1840, 2201, 2246 |
| Ppu21I | YACGTR | 1 cut(s) | 319 |
| PpuMI | RGGWCCY | 1 cut(s) | 49 |
| PshBI | ATTAAT | 1 cut(s) | 2672 |
| Psp5II | RGGWCCY | 1 cut(s) | 49 |
| Psp6I | CCWGG | 7 cut(s) | 642, 2037, 2962, 3180, 3424, 3642, 3892 |
| PspFI | CCCAGC | 1 cut(s) | 4135 |
| PspGI | CCWGG | 7 cut(s) | 642, 2037, 2962, 3180, 3424, 3642, 3892 |
| PspPI | GGNCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| PspPPI | RGGWCCY | 1 cut(s) | 49 |
| PstI | CTGCAG | 9 cut(s) | 223, 336, 370, 1429, 2008, 2869, 3262, 3724, 4192 |
| PstNI | CAGNNNCTG | 3 cut(s) | 113, 340, 2065 |
| PsuI | RGATCY | 5 cut(s) | 1512, 1656, 2411, 2701, 4496 |
| PvuII | CAGCTG | 2 cut(s) | 811, 965 |
| SapI | GCTCTTC | 1 cut(s) | 4398 |
| Sau96I | GGNCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| SchI | GAGTC | 6 cut(s) | 380, 674, 926, 1841, 2201, 2246 |
| ScrFI | CCNGG | 9 cut(s) | 644, 937, 2039, 2964, 3182, 3206, 3426, 3644, 3894 |
| SduI | GDGCHC | 3 cut(s) | 848, 877, 3988 |
| SfaNI | GCATC | 9 cut(s) | 100, 289, 415, 793, 898, 1309, 2155, 2767, 4412 |
| SfuI | TTCGAA | 1 cut(s) | 679 |
| SinI | GGWCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| SmlI | CTYRAG | 4 cut(s) | 32, 461, 797, 2507 |
| SmoI | CTYRAG | 4 cut(s) | 32, 461, 797, 2507 |
| SphI | GCATGC | 1 cut(s) | 996 |
| SsiI | CCGC | 3 cut(s) | 1199, 2785, 3669 |
| SspMI | CTAG | 6 cut(s) | 1334, 1403, 1613, 2834, 3918, 4531 |
| StyD4I | CCNGG | 9 cut(s) | 642, 935, 2037, 2962, 3180, 3204, 3424, 3642, 3892 |
| StyI | CCWWGG | 7 cut(s) | 1864, 2073, 2119, 3034, 3496, 3964, 4320 |
| TaaI | ACNGT | 8 cut(s) | 1351, 1445, 1688, 1792, 2045, 2453, 3575, 4367 |
| TaiI | ACGT | 1 cut(s) | 321 |
| TaqI | TCGA | 6 cut(s) | 679, 2975, 3482, 3602, 3905, 4425 |
| TatI | WGTACW | 3 cut(s) | 148, 347, 1478 |
| TscAI | CASTG | 8 cut(s) | 341, 1329, 1450, 1461, 1560, 2097, 2901, 2931 |
| TspGWI | ACGGA | 7 cut(s) | 1729, 2676, 2707, 3268, 3730, 4162, 4198 |
| TspRI | CASTG | 8 cut(s) | 341, 1329, 1450, 1461, 1560, 2097, 2901, 2931 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4493 |
| VpaK11BI | GGWCC | 7 cut(s) | 49, 415, 1029, 1367, 1861, 4223, 4324 |
| VspI | ATTAAT | 1 cut(s) | 2672 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2636 |
| XbaI | TCTAGA | 1 cut(s) | 1402 |
| XceI | RCATGY | 2 cut(s) | 996, 1595 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2219, 2848 |
| XmiI | GTMKAC | 4 cut(s) | 2392, 3082, 3544, 4012 |
| XmnI | GAANNNNTTC | 6 cut(s) | 135, 554, 1287, 3189, 3651, 4119 |
| XspI | CTAG | 6 cut(s) | 1334, 1403, 1613, 2834, 3918, 4531 |
| Zsp2I | ATGCAT | 1 cut(s) | 786 |