Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001065

Physical Location & Seq

Genomic Coordinates Forward (+)

9380789 .. 9383177

Gene Structure 2389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0059900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAGAAGTGAAGCTACTAGGATTTTGGCCAAGCCCCTTTGTTTATAGGGTGATATGGGCTCTCAAACTAAAGGGTGTGCAATTTGATTACATAGAAGAAGACCTTTCCAACAAGAGTGAACTGCTACTGCGGTACAACCCAGTTTTGAAAAAAGTCCCGGTGCTTATCCATGGCGGCAAAGCAATTGCCGAGTCCCTTGTCATCCTTGAATACATTGAAGAGACTTGGCCACAGAATCCCTTGCTTCCAAAAGATCCACATGAAAAAGCCTTGGCTCGATTTTGGATTCAATTTGGTCTTGAGAAGATGAGGCCCATTCATCAGGCATATTTCCCAGCTATTGGAGAAGAACGTGAAAAGGCAGCAAAACAGTATCAAGAAGTTTTGAAAATCGTGGAAGATCAATGCCTCGGAGACCAGAGGTTCTTCGGTGGTGAAACTATAGGTATGGTGGATATAGTATATGGAATGCTAGCTTACTGGTTTGAGTGCATGGAAGAAGCGGTGGGGGTGAAAGTTATAGAGCCCAGCATTTTGCCTCGCTTGCATGCATGGGTTAACAACTTCAAGCAAGTGTCTGTGATTAAAGATAACCTTCCTCATCATGGAAAACTGCTTGCCTATTACAAAACTTTAAGAGAGAAATTGGTTTCAGCCCGTAGTACTCTACCCACTCCCAGTAATCACGATGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006342 GO:0006344 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0040029 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

Chromo Helicase_C SNF2_N

Protein Analysis

233

Amino Acids

26.89

Weight (kDa)

6.4

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	3 - 75	3.4e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 80	5.7e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	12 - 76	2.9e-15	Glutathione S-transferase, N-terminal domain
DUF7962	PF25907	115 - 193	6.9e-06	Domain of unknown function (DUF7962)
GST_C_2	PF13410	118 - 187	1.7e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001065)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08060 AT1G08060 AT1G08060
fragaria_vesca	FvH4_3g31740 FvH4_3g31740 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540 FvH4_4g08540
malus_domestica	MD03G1121600.v1.1 MD11G1139900.v1.1 MD11G1140000.v1.1
prunus_persica	Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104600_v2.0.a1 Prupe.6G104700_v2.0.a1
pyrus_communis	pycom11g11560 pycom11g11580
rosa_chinensis	RchiOBHm_Chr4g0405411 RchiOBHm_Chr5g0058411
rosa_laevigata	RLG00000008844 RLG00000035218
rosa_multiflora	Rmu_sc0000367.1_g000115 Rmu_sc0000575.1_g000013
rosa_roxburghii	Rroxscaffold_1G00022120 Rroxscaffold_1G00022140 Rroxscaffold_5G00349880
rosa_rugosa	Rorug04G0059700 Rorug04G0059800 Rorug04G0059900 Rorug04G0060000 Rorug05G0313800 Rorug05G0313800 Rorug05G0313900 Rorug05G0314000 Rorug05G0314100
rosa_samantha	Rh4AG131700 Rh4BG126600 Rh4CG139100 Rh4DG125700 Rh5AG381300 Rh5BG392800 Rh5CG416900 Rh5DG408000
rosa_wichuraiana	Rw4G010660 Rw5G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	344
AciI	CCGC	3 cut(s)	133, 177, 506
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	29, 230
AfaI	GTAC	2 cut(s)	137, 667
AfiI	CCNNNNNNNGG	2 cut(s)	344, 608
AgsI	TTSAA	6 cut(s)	151, 212, 221, 293, 391, 571
AluBI	AGCT	4 cut(s)	16, 341, 479, 699
AluI	AGCT	4 cut(s)	16, 341, 479, 699
Alw26I	GTCTC	2 cut(s)	218, 411
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	3 cut(s)	29, 230, 314
ApeKI	GCWGC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	64, 449, 526
AsuNHI	GCTAGC	2 cut(s)	475, 695
BalI	TGGCCA	2 cut(s)	31, 232
BanII	GRGCYC	2 cut(s)	64, 531
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	218, 411
BfaI	CTAG	4 cut(s)	20, 476, 696, 700
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	2 cut(s)	178, 366
BlsI	GCNGC	2 cut(s)	179, 367
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	161
BmrI	ACTGGG	2 cut(s)	137, 675
BmsI	GCATC	1 cut(s)	682
BmtI	GCTAGC	2 cut(s)	479, 699
BmuI	ACTGGG	2 cut(s)	137, 675
BpiI	GAAGAC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	323
BpuMI	CCSGG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	172, 273, 412
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 608
Bse1I	ACTGG	3 cut(s)	143, 488, 681
BseDI	CCNNGG	3 cut(s)	172, 273, 412
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	344, 608
BseNI	ACTGG	3 cut(s)	143, 488, 681
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	2 cut(s)	337, 530
BshFI	GGCC	3 cut(s)	31, 232, 316
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	143, 181
BslI	CCNNNNNNNGG	2 cut(s)	344, 608
BsmAI	GTCTC	2 cut(s)	218, 411
BsmFI	GGGAC	2 cut(s)	143, 181
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	31, 232, 316
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	64, 531
Bsp143I	GATC	2 cut(s)	256, 403
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	3 cut(s)	133, 177, 506
BspANI	GGCC	3 cut(s)	31, 232, 316
BspOI	GCTAGC	2 cut(s)	479, 699
BspPI	GGATC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	3 cut(s)	143, 488, 681
BssECI	CCNNGG	3 cut(s)	172, 273, 412
BssMI	GATC	2 cut(s)	256, 403
BssT1I	CCWWGG	2 cut(s)	172, 273
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	5 cut(s)	477, 548, 552, 621, 697
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	259, 406
BstMAI	GTCTC	2 cut(s)	218, 411
BstMBI	GATC	2 cut(s)	256, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	3 cut(s)	31, 232, 316
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	5 cut(s)	477, 548, 552, 621, 697
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	136, 666
CviAII	CATG	6 cut(s)	173, 263, 496, 551, 555, 608
CviQI	GTAC	2 cut(s)	136, 666
DpnI	GATC	2 cut(s)	258, 405
DpnII	GATC	2 cut(s)	256, 403
EaeI	YGGCCR	2 cut(s)	29, 230
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco130I	CCWWGG	2 cut(s)	172, 273
Eco24I	GRGCYC	2 cut(s)	64, 531
Eco31I	GGTCTC	1 cut(s)	411
EcoT14I	CCWWGG	2 cut(s)	172, 273
EcoT22I	ATGCAT	1 cut(s)	556
EcoT38I	GRGCYC	2 cut(s)	64, 531
ErhI	CCWWGG	2 cut(s)	172, 273
FaeI	CATG	6 cut(s)	176, 266, 499, 554, 558, 611
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 582, 614
FaqI	GGGAC	2 cut(s)	143, 181
FatI	CATG	6 cut(s)	172, 262, 495, 550, 554, 607
Fnu4HI	GCNGC	2 cut(s)	178, 366
FokI	GGATG	1 cut(s)	191
FriOI	GRGCYC	2 cut(s)	64, 531
Fsp4HI	GCNGC	2 cut(s)	178, 366
FspBI	CTAG	4 cut(s)	20, 476, 696, 700
GluI	GCNGC	2 cut(s)	178, 366
GsaI	CCCAGC	2 cut(s)	341, 534
HaeIII	GGCC	3 cut(s)	31, 232, 316
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	6 cut(s)	176, 266, 499, 554, 558, 611
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	3 cut(s)	194, 238, 289
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	3 cut(s)	64, 449, 526
Hpy166II	GTNNAC	2 cut(s)	122, 562
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	3 cut(s)	302, 380, 689
Hpy8I	GTNNAC	2 cut(s)	122, 562
HpyAV	CCTTC	1 cut(s)	608
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	4 cut(s)	82, 495, 550, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	6 cut(s)	176, 266, 499, 554, 558, 611
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	256, 403
LpnPI	CCDG	8 cut(s)	156, 174, 311, 351, 434, 469, 544, 694
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	4 cut(s)	20, 476, 696, 700
MaeII	ACGT	1 cut(s)	355
MalI	GATC	2 cut(s)	258, 405
MboI	GATC	2 cut(s)	256, 403
MboII	GAAGA	9 cut(s)	17, 110, 113, 233, 319, 362, 413, 421, 512
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	64, 531
MlsI	TGGCCA	2 cut(s)	31, 232
MluCI	AATT	4 cut(s)	83, 186, 293, 647
MluNI	TGGCCA	2 cut(s)	31, 232
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	306, 417, 422, 552, 612
Mox20I	TGGCCA	2 cut(s)	31, 232
Mph1103I	ATGCAT	1 cut(s)	556
MscI	TGGCCA	2 cut(s)	31, 232
MseI	TTAA	3 cut(s)	561, 588, 638
Msp20I	TGGCCA	2 cut(s)	31, 232
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	547
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	2 cut(s)	256, 403
NheI	GCTAGC	2 cut(s)	475, 695
NlaIII	CATG	6 cut(s)	176, 266, 499, 554, 558, 611
NmeAIII	GCCGAG	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	238, 289
PflMI	CCANNNNNTGG	1 cut(s)	344
PkrI	GCNGC	2 cut(s)	179, 367
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	337, 530
PspPI	GGNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	137, 667
RsaNI	GTAC	2 cut(s)	136, 666
SaqAI	TTAA	3 cut(s)	561, 588, 638
SatI	GCNGC	2 cut(s)	178, 366
Sau3AI	GATC	2 cut(s)	256, 403
Sau96I	GGNCC	1 cut(s)	315
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	64, 531
SetI	ASST	9 cut(s)	18, 108, 343, 358, 428, 451, 481, 600, 701
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	83, 186, 293, 647
SsiI	CCGC	3 cut(s)	133, 177, 506
SspMI	CTAG	4 cut(s)	20, 476, 696, 700
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	2 cut(s)	172, 273
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	280
TasI	AATT	4 cut(s)	83, 186, 293, 647
TatI	WGTACW	1 cut(s)	665
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	238, 289
Tru1I	TTAA	3 cut(s)	561, 588, 638
Tru9I	TTAA	3 cut(s)	561, 588, 638
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	279, 311
Van91I	CCANNNNNTGG	1 cut(s)	344
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	4 cut(s)	20, 476, 696, 700
ZrmI	AGTACT	1 cut(s)	667
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.